Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06006

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06004 and MPMX19_06005 are separated by 3 nucleotidesMPMX19_06005 and MPMX19_06006 are separated by 1 nucleotidesMPMX19_06006 and MPMX19_06007 are separated by 201 nucleotides MPMX19_06004: MPMX19_06004 - Lipopolysaccharide export system ATP-binding protein LptB, at 158,958 to 159,866 _06004 MPMX19_06005: MPMX19_06005 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 159,870 to 160,580 _06005 MPMX19_06006: MPMX19_06006 - hypothetical protein, at 160,582 to 160,935 _06006 MPMX19_06007: MPMX19_06007 - Leu/Ile/Val-binding protein, at 161,137 to 162,237 _06007 Position (kb) 160 161Strain fitness (log2 ratio) -2 -1 0 1 2at 160.560 kb on + strandat 160.560 kb on + strandat 160.560 kb on + strandat 160.712 kb on - strand, within MPMX19_06006at 160.712 kb on - strand, within MPMX19_06006at 160.712 kb on - strand, within MPMX19_06006at 160.712 kb on - strand, within MPMX19_06006at 160.712 kb on - strand, within MPMX19_06006at 160.870 kb on + strand, within MPMX19_06006at 160.882 kb on + strand, within MPMX19_06006at 160.882 kb on + strand, within MPMX19_06006at 160.882 kb on + strand, within MPMX19_06006at 160.882 kb on + strand, within MPMX19_06006at 160.882 kb on + strand, within MPMX19_06006at 160.882 kb on + strand, within MPMX19_06006at 160.882 kb on + strand, within MPMX19_06006at 160.882 kb on + strand, within MPMX19_06006at 160.882 kb on + strand, within MPMX19_06006at 160.883 kb on - strand, within MPMX19_06006at 160.883 kb on - strand, within MPMX19_06006at 160.883 kb on - strand, within MPMX19_06006at 160.883 kb on - strand, within MPMX19_06006at 160.961 kb on + strandat 160.961 kb on + strandat 160.967 kb on + strandat 160.967 kb on + strandat 160.968 kb on - strandat 160.968 kb on - strandat 160.982 kb on + strandat 160.982 kb on + strandat 161.031 kb on + strandat 161.031 kb on + strandat 161.032 kb on - strandat 161.036 kb on + strandat 161.036 kb on + strandat 161.036 kb on + strandat 161.036 kb on + strandat 161.036 kb on + strandat 161.036 kb on + strandat 161.036 kb on + strandat 161.036 kb on + strandat 161.036 kb on + strandat 161.036 kb on + strandat 161.036 kb on + strandat 161.036 kb on + strandat 161.036 kb on + strandat 161.036 kb on + strandat 161.037 kb on - strandat 161.037 kb on - strandat 161.037 kb on - strandat 161.037 kb on - strandat 161.037 kb on - strandat 161.037 kb on - strandat 161.037 kb on - strandat 161.037 kb on - strandat 161.037 kb on - strandat 161.037 kb on - strandat 161.090 kb on + strandat 161.091 kb on - strandat 161.091 kb on - strandat 161.091 kb on - strandat 161.091 kb on - strandat 161.091 kb on - strandat 161.091 kb on - strandat 161.091 kb on - strandat 161.091 kb on - strandat 161.091 kb on - strandat 161.091 kb on - strandat 161.114 kb on + strandat 161.114 kb on + strandat 161.114 kb on + strandat 161.114 kb on + strandat 161.114 kb on + strandat 161.114 kb on + strandat 161.114 kb on + strandat 161.114 kb on + strandat 161.114 kb on + strandat 161.114 kb on + strandat 161.114 kb on + strandat 161.114 kb on + strandat 161.114 kb on + strandat 161.115 kb on - strandat 161.115 kb on - strandat 161.115 kb on - strandat 161.115 kb on - strandat 161.115 kb on - strandat 161.245 kb on + strandat 161.245 kb on + strandat 161.246 kb on - strandat 161.246 kb on - strandat 161.246 kb on - strandat 161.246 kb on - strandat 161.467 kb on + strand, within MPMX19_06007at 161.467 kb on + strand, within MPMX19_06007at 161.467 kb on + strand, within MPMX19_06007at 161.467 kb on + strand, within MPMX19_06007at 161.467 kb on + strand, within MPMX19_06007at 161.467 kb on + strand, within MPMX19_06007at 161.467 kb on + strand, within MPMX19_06007at 161.467 kb on + strand, within MPMX19_06007at 161.467 kb on + strand, within MPMX19_06007at 161.468 kb on - strand, within MPMX19_06007at 161.468 kb on - strand, within MPMX19_06007at 161.468 kb on - strand, within MPMX19_06007at 161.468 kb on - strand, within MPMX19_06007at 161.468 kb on - strand, within MPMX19_06007at 161.468 kb on - strand, within MPMX19_06007at 161.468 kb on - strand, within MPMX19_06007at 161.468 kb on - strand, within MPMX19_06007at 161.468 kb on - strand, within MPMX19_06007at 161.468 kb on - strand, within MPMX19_06007at 161.593 kb on + strand, within MPMX19_06007at 161.593 kb on + strand, within MPMX19_06007at 161.593 kb on + strand, within MPMX19_06007at 161.593 kb on + strand, within MPMX19_06007at 161.593 kb on + strand, within MPMX19_06007at 161.593 kb on + strand, within MPMX19_06007at 161.593 kb on + strand, within MPMX19_06007at 161.593 kb on + strand, within MPMX19_06007at 161.594 kb on - strand, within MPMX19_06007at 161.594 kb on - strand, within MPMX19_06007at 161.594 kb on - strand, within MPMX19_06007at 161.594 kb on - strand, within MPMX19_06007at 161.608 kb on + strand, within MPMX19_06007at 161.608 kb on + strand, within MPMX19_06007at 161.608 kb on + strand, within MPMX19_06007at 161.608 kb on + strand, within MPMX19_06007at 161.608 kb on + strand, within MPMX19_06007at 161.608 kb on + strand, within MPMX19_06007at 161.608 kb on + strand, within MPMX19_06007at 161.608 kb on + strand, within MPMX19_06007at 161.609 kb on - strand, within MPMX19_06007at 161.609 kb on - strand, within MPMX19_06007at 161.609 kb on - strand, within MPMX19_06007at 161.609 kb on - strand, within MPMX19_06007at 161.609 kb on - strand, within MPMX19_06007at 161.609 kb on - strand, within MPMX19_06007at 161.609 kb on - strand, within MPMX19_06007at 161.609 kb on - strand, within MPMX19_06007at 161.609 kb on - strand, within MPMX19_06007at 161.609 kb on - strand, within MPMX19_06007at 161.609 kb on - strand, within MPMX19_06007at 161.609 kb on - strand, within MPMX19_06007at 161.609 kb on - strand, within MPMX19_06007at 161.609 kb on - strand, within MPMX19_06007at 161.650 kb on + strand, within MPMX19_06007at 161.650 kb on + strand, within MPMX19_06007at 161.650 kb on + strand, within MPMX19_06007at 161.650 kb on + strand, within MPMX19_06007at 161.655 kb on + strand, within MPMX19_06007at 161.655 kb on + strand, within MPMX19_06007at 161.656 kb on - strand, within MPMX19_06007at 161.656 kb on - strand, within MPMX19_06007at 161.716 kb on + strand, within MPMX19_06007at 161.716 kb on + strand, within MPMX19_06007at 161.716 kb on + strand, within MPMX19_06007at 161.716 kb on + strand, within MPMX19_06007at 161.716 kb on + strand, within MPMX19_06007at 161.716 kb on + strand, within MPMX19_06007at 161.716 kb on + strand, within MPMX19_06007at 161.716 kb on + strand, within MPMX19_06007at 161.716 kb on + strand, within MPMX19_06007at 161.717 kb on - strand, within MPMX19_06007at 161.717 kb on - strand, within MPMX19_06007at 161.717 kb on - strand, within MPMX19_06007at 161.717 kb on - strand, within MPMX19_06007at 161.717 kb on - strand, within MPMX19_06007at 161.717 kb on - strand, within MPMX19_06007at 161.717 kb on - strand, within MPMX19_06007at 161.717 kb on - strand, within MPMX19_06007at 161.717 kb on - strand, within MPMX19_06007at 161.717 kb on - strand, within MPMX19_06007at 161.717 kb on - strand, within MPMX19_06007at 161.717 kb on - strand, within MPMX19_06007at 161.717 kb on - strand, within MPMX19_06007at 161.717 kb on - strand, within MPMX19_06007at 161.725 kb on + strand, within MPMX19_06007at 161.725 kb on + strand, within MPMX19_06007at 161.725 kb on + strand, within MPMX19_06007at 161.726 kb on - strand, within MPMX19_06007at 161.726 kb on - strand, within MPMX19_06007at 161.726 kb on - strand, within MPMX19_06007at 161.746 kb on + strand, within MPMX19_06007at 161.746 kb on + strand, within MPMX19_06007at 161.746 kb on + strand, within MPMX19_06007at 161.746 kb on + strand, within MPMX19_06007at 161.746 kb on + strand, within MPMX19_06007at 161.746 kb on + strand, within MPMX19_06007at 161.746 kb on + strand, within MPMX19_06007at 161.747 kb on - strand, within MPMX19_06007at 161.747 kb on - strand, within MPMX19_06007at 161.747 kb on - strand, within MPMX19_06007at 161.747 kb on - strand, within MPMX19_06007at 161.794 kb on + strand, within MPMX19_06007at 161.794 kb on + strand, within MPMX19_06007at 161.794 kb on + strand, within MPMX19_06007at 161.794 kb on + strand, within MPMX19_06007at 161.794 kb on + strand, within MPMX19_06007at 161.794 kb on + strand, within MPMX19_06007at 161.794 kb on + strand, within MPMX19_06007at 161.794 kb on + strand, within MPMX19_06007at 161.794 kb on + strand, within MPMX19_06007at 161.794 kb on + strand, within MPMX19_06007at 161.794 kb on + strand, within MPMX19_06007at 161.795 kb on - strand, within MPMX19_06007at 161.795 kb on - strand, within MPMX19_06007at 161.795 kb on - strand, within MPMX19_06007at 161.795 kb on - strand, within MPMX19_06007at 161.795 kb on - strand, within MPMX19_06007at 161.795 kb on - strand, within MPMX19_06007at 161.795 kb on - strand, within MPMX19_06007at 161.795 kb on - strand, within MPMX19_06007at 161.795 kb on - strand, within MPMX19_06007at 161.795 kb on - strand, within MPMX19_06007at 161.795 kb on - strand, within MPMX19_06007at 161.795 kb on - strand, within MPMX19_06007at 161.795 kb on - strand, within MPMX19_06007at 161.806 kb on + strand, within MPMX19_06007at 161.806 kb on + strand, within MPMX19_06007at 161.807 kb on - strand, within MPMX19_06007at 161.899 kb on + strand, within MPMX19_06007at 161.899 kb on + strand, within MPMX19_06007at 161.899 kb on + strand, within MPMX19_06007at 161.900 kb on - strand, within MPMX19_06007at 161.900 kb on - strand, within MPMX19_06007at 161.900 kb on - strand, within MPMX19_06007

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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160,560 + -0.7
160,560 + -0.5
160,560 + -1.4
160,712 - MPMX19_06006 0.37 -1.2
160,712 - MPMX19_06006 0.37 +0.4
160,712 - MPMX19_06006 0.37 -0.8
160,712 - MPMX19_06006 0.37 -0.1
160,712 - MPMX19_06006 0.37 -1.0
160,870 + MPMX19_06006 0.81 -1.4
160,882 + MPMX19_06006 0.85 +0.0
160,882 + MPMX19_06006 0.85 +0.7
160,882 + MPMX19_06006 0.85 +1.6
160,882 + MPMX19_06006 0.85 +0.4
160,882 + MPMX19_06006 0.85 -0.4
160,882 + MPMX19_06006 0.85 -1.4
160,882 + MPMX19_06006 0.85 -0.1
160,882 + MPMX19_06006 0.85 +0.1
160,882 + MPMX19_06006 0.85 +0.8
160,883 - MPMX19_06006 0.85 +2.2
160,883 - MPMX19_06006 0.85 -1.0
160,883 - MPMX19_06006 0.85 +0.8
160,883 - MPMX19_06006 0.85 +0.6
160,961 + -1.0
160,961 + -1.8
160,967 + -0.4
160,967 + +0.2
160,968 - +0.9
160,968 - -0.4
160,982 + -1.1
160,982 + +0.2
161,031 + -0.6
161,031 + +1.0
161,032 - -0.1
161,036 + -0.7
161,036 + -0.2
161,036 + -1.4
161,036 + -0.2
161,036 + -0.6
161,036 + -2.7
161,036 + -0.4
161,036 + -0.8
161,036 + -1.1
161,036 + -0.7
161,036 + +0.2
161,036 + +1.4
161,036 + +0.6
161,036 + -0.1
161,037 - -1.7
161,037 - -0.4
161,037 - +0.1
161,037 - -1.1
161,037 - -0.4
161,037 - -0.6
161,037 - -0.4
161,037 - -0.8
161,037 - -0.6
161,037 - -0.1
161,090 + -0.5
161,091 - +0.6
161,091 - +1.2
161,091 - +0.2
161,091 - -0.4
161,091 - -1.2
161,091 - -0.2
161,091 - -0.6
161,091 - +1.2
161,091 - -0.8
161,091 - -1.8
161,114 + -0.1
161,114 + -0.1
161,114 + +0.8
161,114 + +0.1
161,114 + +0.8
161,114 + -1.7
161,114 + -1.2
161,114 + -0.5
161,114 + -1.9
161,114 + -0.8
161,114 + -0.3
161,114 + +0.4
161,114 + +0.2
161,115 - -1.0
161,115 - -0.6
161,115 - +2.0
161,115 - -0.8
161,115 - +0.4
161,245 + -0.3
161,245 + -1.8
161,246 - -0.6
161,246 - +0.0
161,246 - -0.7
161,246 - +0.6
161,467 + MPMX19_06007 0.30 +0.2
161,467 + MPMX19_06007 0.30 +0.9
161,467 + MPMX19_06007 0.30 +0.6
161,467 + MPMX19_06007 0.30 -0.2
161,467 + MPMX19_06007 0.30 +0.2
161,467 + MPMX19_06007 0.30 +0.9
161,467 + MPMX19_06007 0.30 -0.4
161,467 + MPMX19_06007 0.30 +1.0
161,467 + MPMX19_06007 0.30 +0.1
161,468 - MPMX19_06007 0.30 -0.1
161,468 - MPMX19_06007 0.30 -1.8
161,468 - MPMX19_06007 0.30 -0.6
161,468 - MPMX19_06007 0.30 -0.2
161,468 - MPMX19_06007 0.30 -0.4
161,468 - MPMX19_06007 0.30 -0.8
161,468 - MPMX19_06007 0.30 +0.4
161,468 - MPMX19_06007 0.30 -0.4
161,468 - MPMX19_06007 0.30 -0.6
161,468 - MPMX19_06007 0.30 -0.6
161,593 + MPMX19_06007 0.41 -1.5
161,593 + MPMX19_06007 0.41 -1.4
161,593 + MPMX19_06007 0.41 -0.8
161,593 + MPMX19_06007 0.41 +0.7
161,593 + MPMX19_06007 0.41 -2.0
161,593 + MPMX19_06007 0.41 -0.4
161,593 + MPMX19_06007 0.41 +0.2
161,593 + MPMX19_06007 0.41 +0.5
161,594 - MPMX19_06007 0.42 -0.4
161,594 - MPMX19_06007 0.42 +0.0
161,594 - MPMX19_06007 0.42 +0.2
161,594 - MPMX19_06007 0.42 -1.1
161,608 + MPMX19_06007 0.43 -0.9
161,608 + MPMX19_06007 0.43 -0.6
161,608 + MPMX19_06007 0.43 -1.0
161,608 + MPMX19_06007 0.43 -1.0
161,608 + MPMX19_06007 0.43 -0.1
161,608 + MPMX19_06007 0.43 -2.2
161,608 + MPMX19_06007 0.43 -0.7
161,608 + MPMX19_06007 0.43 -1.0
161,609 - MPMX19_06007 0.43 -0.4
161,609 - MPMX19_06007 0.43 -1.4
161,609 - MPMX19_06007 0.43 -1.2
161,609 - MPMX19_06007 0.43 -1.0
161,609 - MPMX19_06007 0.43 -2.0
161,609 - MPMX19_06007 0.43 +0.2
161,609 - MPMX19_06007 0.43 -0.2
161,609 - MPMX19_06007 0.43 -0.2
161,609 - MPMX19_06007 0.43 -1.2
161,609 - MPMX19_06007 0.43 -1.1
161,609 - MPMX19_06007 0.43 -2.0
161,609 - MPMX19_06007 0.43 -1.4
161,609 - MPMX19_06007 0.43 -1.7
161,609 - MPMX19_06007 0.43 -1.8
161,650 + MPMX19_06007 0.47 -1.0
161,650 + MPMX19_06007 0.47 -0.3
161,650 + MPMX19_06007 0.47 -0.1
161,650 + MPMX19_06007 0.47 +0.4
161,655 + MPMX19_06007 0.47 +0.4
161,655 + MPMX19_06007 0.47 -1.1
161,656 - MPMX19_06007 0.47 -0.4
161,656 - MPMX19_06007 0.47 -0.3
161,716 + MPMX19_06007 0.53 +1.4
161,716 + MPMX19_06007 0.53 +0.2
161,716 + MPMX19_06007 0.53 -0.8
161,716 + MPMX19_06007 0.53 -2.0
161,716 + MPMX19_06007 0.53 +0.3
161,716 + MPMX19_06007 0.53 -0.8
161,716 + MPMX19_06007 0.53 +0.6
161,716 + MPMX19_06007 0.53 -0.3
161,716 + MPMX19_06007 0.53 -1.1
161,717 - MPMX19_06007 0.53 +1.8
161,717 - MPMX19_06007 0.53 -0.4
161,717 - MPMX19_06007 0.53 +0.6
161,717 - MPMX19_06007 0.53 -0.2
161,717 - MPMX19_06007 0.53 -0.2
161,717 - MPMX19_06007 0.53 -0.4
161,717 - MPMX19_06007 0.53 -1.8
161,717 - MPMX19_06007 0.53 +0.1
161,717 - MPMX19_06007 0.53 +0.2
161,717 - MPMX19_06007 0.53 -0.5
161,717 - MPMX19_06007 0.53 -2.0
161,717 - MPMX19_06007 0.53 +0.2
161,717 - MPMX19_06007 0.53 +0.2
161,717 - MPMX19_06007 0.53 -1.2
161,725 + MPMX19_06007 0.53 -0.6
161,725 + MPMX19_06007 0.53 +0.9
161,725 + MPMX19_06007 0.53 -2.0
161,726 - MPMX19_06007 0.53 -0.4
161,726 - MPMX19_06007 0.53 -1.4
161,726 - MPMX19_06007 0.53 -1.2
161,746 + MPMX19_06007 0.55 -0.2
161,746 + MPMX19_06007 0.55 -1.6
161,746 + MPMX19_06007 0.55 -0.9
161,746 + MPMX19_06007 0.55 +0.3
161,746 + MPMX19_06007 0.55 -0.4
161,746 + MPMX19_06007 0.55 +0.1
161,746 + MPMX19_06007 0.55 -1.3
161,747 - MPMX19_06007 0.55 -0.5
161,747 - MPMX19_06007 0.55 -1.2
161,747 - MPMX19_06007 0.55 -1.0
161,747 - MPMX19_06007 0.55 +0.2
161,794 + MPMX19_06007 0.60 -0.2
161,794 + MPMX19_06007 0.60 +0.4
161,794 + MPMX19_06007 0.60 +0.0
161,794 + MPMX19_06007 0.60 -0.8
161,794 + MPMX19_06007 0.60 +0.3
161,794 + MPMX19_06007 0.60 -0.4
161,794 + MPMX19_06007 0.60 -0.3
161,794 + MPMX19_06007 0.60 -0.5
161,794 + MPMX19_06007 0.60 +0.6
161,794 + MPMX19_06007 0.60 -1.8
161,794 + MPMX19_06007 0.60 -1.2
161,795 - MPMX19_06007 0.60 +1.2
161,795 - MPMX19_06007 0.60 +0.1
161,795 - MPMX19_06007 0.60 +0.7
161,795 - MPMX19_06007 0.60 -1.1
161,795 - MPMX19_06007 0.60 +1.2
161,795 - MPMX19_06007 0.60 +0.2
161,795 - MPMX19_06007 0.60 +0.4
161,795 - MPMX19_06007 0.60 -1.2
161,795 - MPMX19_06007 0.60 +1.1
161,795 - MPMX19_06007 0.60 -0.8
161,795 - MPMX19_06007 0.60 -1.8
161,795 - MPMX19_06007 0.60 -0.8
161,795 - MPMX19_06007 0.60 +0.3
161,806 + MPMX19_06007 0.61 -1.6
161,806 + MPMX19_06007 0.61 -1.6
161,807 - MPMX19_06007 0.61 -1.6
161,899 + MPMX19_06007 0.69 -0.2
161,899 + MPMX19_06007 0.69 -0.3
161,899 + MPMX19_06007 0.69 -0.1
161,900 - MPMX19_06007 0.69 -0.2
161,900 - MPMX19_06007 0.69 -1.0
161,900 - MPMX19_06007 0.69 -1.2

Or see this region's nucleotide sequence