Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05955 and MPMX19_05956 are separated by 107 nucleotides MPMX19_05956 and MPMX19_05957 are separated by 147 nucleotides MPMX19_05957 and MPMX19_05958 are separated by 169 nucleotides
MPMX19_05955: MPMX19_05955 - Riboflavin transporter, at 103,582 to 104,520
_05955
MPMX19_05956: MPMX19_05956 - hypothetical protein, at 104,628 to 105,179
_05956
MPMX19_05957: MPMX19_05957 - hypothetical protein, at 105,327 to 105,938
_05957
MPMX19_05958: MPMX19_05958 - hypothetical protein, at 106,108 to 107,697
_05958
Position (kb) 105
106 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 104.534 kb on + strand at 104.534 kb on + strand at 104.535 kb on - strand at 104.535 kb on - strand at 104.535 kb on - strand at 104.535 kb on - strand at 104.535 kb on - strand at 104.607 kb on + strand at 104.607 kb on + strand at 104.607 kb on + strand at 104.608 kb on - strand at 104.728 kb on + strand, within MPMX19_05956 at 104.866 kb on + strand, within MPMX19_05956 at 104.866 kb on + strand, within MPMX19_05956 at 104.866 kb on + strand, within MPMX19_05956 at 104.866 kb on + strand, within MPMX19_05956 at 104.866 kb on + strand, within MPMX19_05956 at 104.866 kb on + strand, within MPMX19_05956 at 104.866 kb on + strand, within MPMX19_05956 at 104.866 kb on + strand, within MPMX19_05956 at 104.866 kb on + strand, within MPMX19_05956 at 104.866 kb on + strand, within MPMX19_05956 at 104.866 kb on + strand, within MPMX19_05956 at 104.866 kb on + strand, within MPMX19_05956 at 104.866 kb on + strand, within MPMX19_05956 at 104.866 kb on + strand, within MPMX19_05956 at 104.867 kb on - strand, within MPMX19_05956 at 104.867 kb on - strand, within MPMX19_05956 at 104.867 kb on - strand, within MPMX19_05956 at 104.867 kb on - strand, within MPMX19_05956 at 104.867 kb on - strand, within MPMX19_05956 at 104.867 kb on - strand, within MPMX19_05956 at 104.867 kb on - strand, within MPMX19_05956 at 104.867 kb on - strand, within MPMX19_05956 at 104.867 kb on - strand, within MPMX19_05956 at 104.867 kb on - strand, within MPMX19_05956 at 104.867 kb on - strand, within MPMX19_05956 at 104.867 kb on - strand, within MPMX19_05956 at 104.867 kb on - strand, within MPMX19_05956 at 104.867 kb on - strand, within MPMX19_05956 at 104.868 kb on - strand, within MPMX19_05956 at 105.232 kb on + strand at 105.232 kb on + strand at 105.233 kb on - strand at 105.233 kb on - strand at 105.244 kb on - strand at 105.352 kb on + strand at 105.353 kb on - strand at 105.355 kb on + strand at 105.355 kb on + strand at 105.355 kb on + strand at 105.355 kb on + strand at 105.355 kb on + strand at 105.355 kb on + strand at 105.355 kb on + strand at 105.356 kb on - strand at 105.356 kb on - strand at 105.356 kb on - strand at 105.356 kb on - strand at 105.356 kb on - strand at 105.356 kb on - strand at 105.356 kb on - strand at 105.424 kb on + strand, within MPMX19_05957 at 105.424 kb on + strand, within MPMX19_05957 at 105.424 kb on + strand, within MPMX19_05957 at 105.424 kb on + strand, within MPMX19_05957 at 105.425 kb on - strand, within MPMX19_05957 at 105.425 kb on - strand, within MPMX19_05957 at 105.425 kb on - strand, within MPMX19_05957 at 105.425 kb on - strand, within MPMX19_05957 at 105.425 kb on - strand, within MPMX19_05957 at 105.425 kb on - strand, within MPMX19_05957 at 105.425 kb on - strand, within MPMX19_05957 at 105.460 kb on + strand, within MPMX19_05957 at 105.460 kb on + strand, within MPMX19_05957 at 105.461 kb on - strand, within MPMX19_05957 at 105.461 kb on - strand, within MPMX19_05957 at 105.461 kb on - strand, within MPMX19_05957 at 105.691 kb on + strand, within MPMX19_05957 at 105.691 kb on + strand, within MPMX19_05957 at 105.691 kb on + strand, within MPMX19_05957 at 105.691 kb on + strand, within MPMX19_05957 at 105.691 kb on + strand, within MPMX19_05957 at 105.691 kb on + strand, within MPMX19_05957 at 105.691 kb on + strand, within MPMX19_05957 at 105.691 kb on + strand, within MPMX19_05957 at 105.691 kb on + strand, within MPMX19_05957 at 105.691 kb on + strand, within MPMX19_05957 at 105.691 kb on + strand, within MPMX19_05957 at 105.691 kb on + strand, within MPMX19_05957 at 105.691 kb on + strand, within MPMX19_05957 at 105.691 kb on + strand, within MPMX19_05957 at 105.691 kb on + strand, within MPMX19_05957 at 105.691 kb on + strand, within MPMX19_05957 at 105.691 kb on + strand, within MPMX19_05957 at 105.691 kb on + strand, within MPMX19_05957 at 105.692 kb on - strand, within MPMX19_05957 at 105.692 kb on - strand, within MPMX19_05957 at 105.692 kb on - strand, within MPMX19_05957 at 105.692 kb on - strand, within MPMX19_05957 at 105.692 kb on - strand, within MPMX19_05957 at 105.692 kb on - strand, within MPMX19_05957 at 105.692 kb on - strand, within MPMX19_05957 at 105.692 kb on - strand, within MPMX19_05957 at 105.692 kb on - strand, within MPMX19_05957 at 105.692 kb on - strand, within MPMX19_05957 at 105.692 kb on - strand, within MPMX19_05957 at 105.692 kb on - strand, within MPMX19_05957 at 105.692 kb on - strand, within MPMX19_05957 at 105.692 kb on - strand, within MPMX19_05957 at 105.692 kb on - strand, within MPMX19_05957 at 105.692 kb on - strand, within MPMX19_05957 at 105.693 kb on - strand, within MPMX19_05957 at 105.781 kb on + strand, within MPMX19_05957 at 105.781 kb on + strand, within MPMX19_05957 at 105.781 kb on + strand, within MPMX19_05957 at 105.781 kb on + strand, within MPMX19_05957 at 105.782 kb on - strand, within MPMX19_05957 at 105.782 kb on - strand, within MPMX19_05957 at 105.782 kb on - strand, within MPMX19_05957 at 105.782 kb on - strand, within MPMX19_05957 at 105.782 kb on - strand, within MPMX19_05957 at 105.782 kb on - strand, within MPMX19_05957 at 105.782 kb on - strand, within MPMX19_05957 at 105.961 kb on + strand at 105.962 kb on - strand at 105.962 kb on - strand at 105.962 kb on - strand at 105.962 kb on - strand at 105.962 kb on - strand at 106.001 kb on + strand at 106.001 kb on + strand at 106.001 kb on + strand at 106.001 kb on + strand at 106.002 kb on - strand at 106.002 kb on - strand at 106.002 kb on - strand at 106.002 kb on - strand at 106.002 kb on - strand at 106.002 kb on - strand at 106.002 kb on - strand at 106.002 kb on - strand at 106.002 kb on - strand at 106.003 kb on + strand at 106.003 kb on + strand at 106.003 kb on + strand at 106.003 kb on + strand at 106.003 kb on + strand at 106.003 kb on + strand at 106.003 kb on + strand at 106.003 kb on + strand at 106.003 kb on + strand at 106.003 kb on + strand at 106.003 kb on + strand at 106.003 kb on + strand at 106.004 kb on - strand at 106.004 kb on - strand at 106.004 kb on - strand at 106.004 kb on - strand at 106.004 kb on - strand at 106.004 kb on - strand at 106.004 kb on - strand at 106.004 kb on - strand at 106.035 kb on + strand at 106.035 kb on + strand at 106.035 kb on + strand at 106.035 kb on + strand at 106.035 kb on + strand at 106.036 kb on - strand at 106.036 kb on - strand at 106.044 kb on + strand at 106.044 kb on + strand at 106.045 kb on - strand at 106.045 kb on - strand at 106.050 kb on + strand at 106.050 kb on + strand at 106.050 kb on + strand at 106.051 kb on - strand at 106.051 kb on - strand at 106.051 kb on - strand at 106.117 kb on + strand at 106.117 kb on + strand at 106.117 kb on + strand at 106.117 kb on + strand at 106.117 kb on + strand at 106.117 kb on + strand at 106.117 kb on + strand at 106.117 kb on + strand at 106.117 kb on + strand at 106.117 kb on + strand at 106.117 kb on + strand at 106.118 kb on - strand at 106.118 kb on - strand at 106.118 kb on - strand at 106.118 kb on - strand at 106.118 kb on - strand at 106.118 kb on - strand at 106.118 kb on - strand at 106.118 kb on - strand at 106.118 kb on - strand at 106.122 kb on + strand at 106.122 kb on + strand at 106.122 kb on + strand at 106.122 kb on + strand at 106.122 kb on + strand at 106.122 kb on + strand at 106.122 kb on + strand at 106.122 kb on + strand at 106.122 kb on + strand at 106.122 kb on + strand at 106.122 kb on + strand at 106.122 kb on + strand at 106.122 kb on + strand at 106.122 kb on + strand at 106.122 kb on + strand at 106.123 kb on - strand at 106.123 kb on - strand at 106.123 kb on - strand at 106.123 kb on - strand at 106.123 kb on - strand at 106.123 kb on - strand at 106.123 kb on - strand at 106.123 kb on - strand at 106.123 kb on - strand at 106.123 kb on - strand at 106.123 kb on - strand at 106.123 kb on - strand at 106.316 kb on - strand, within MPMX19_05958 at 106.321 kb on + strand, within MPMX19_05958 at 106.321 kb on + strand, within MPMX19_05958 at 106.321 kb on + strand, within MPMX19_05958 at 106.321 kb on + strand, within MPMX19_05958 at 106.322 kb on - strand, within MPMX19_05958 at 106.322 kb on - strand, within MPMX19_05958 at 106.322 kb on - strand, within MPMX19_05958 at 106.322 kb on - strand, within MPMX19_05958 at 106.405 kb on + strand, within MPMX19_05958 at 106.406 kb on - strand, within MPMX19_05958 at 106.912 kb on + strand, within MPMX19_05958 at 106.912 kb on + strand, within MPMX19_05958 at 106.912 kb on + strand, within MPMX19_05958 at 106.912 kb on + strand, within MPMX19_05958 at 106.912 kb on + strand, within MPMX19_05958 at 106.912 kb on + strand, within MPMX19_05958 at 106.912 kb on + strand, within MPMX19_05958 at 106.912 kb on + strand, within MPMX19_05958 at 106.912 kb on + strand, within MPMX19_05958 at 106.912 kb on + strand, within MPMX19_05958 at 106.912 kb on + strand, within MPMX19_05958 at 106.912 kb on + strand, within MPMX19_05958 at 106.912 kb on + strand, within MPMX19_05958 at 106.912 kb on + strand, within MPMX19_05958 at 106.913 kb on - strand, within MPMX19_05958 at 106.913 kb on - strand, within MPMX19_05958 at 106.913 kb on - strand, within MPMX19_05958 at 106.913 kb on - strand, within MPMX19_05958 at 106.913 kb on - strand, within MPMX19_05958 at 106.913 kb on - strand, within MPMX19_05958 at 106.913 kb on - strand, within MPMX19_05958 at 106.913 kb on - strand, within MPMX19_05958 at 106.913 kb on - strand, within MPMX19_05958 at 106.913 kb on - strand, within MPMX19_05958
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 104,534 + -0.8 104,534 + -1.4 104,535 - -1.0 104,535 - -0.2 104,535 - -1.3 104,535 - -0.6 104,535 - -0.6 104,607 + -0.6 104,607 + -0.8 104,607 + +0.7 104,608 - +0.0 104,728 + MPMX19_05956 0.18 -0.4 104,866 + MPMX19_05956 0.43 +0.0 104,866 + MPMX19_05956 0.43 -0.2 104,866 + MPMX19_05956 0.43 -0.4 104,866 + MPMX19_05956 0.43 -0.2 104,866 + MPMX19_05956 0.43 +0.5 104,866 + MPMX19_05956 0.43 -0.1 104,866 + MPMX19_05956 0.43 -0.4 104,866 + MPMX19_05956 0.43 -0.1 104,866 + MPMX19_05956 0.43 -1.0 104,866 + MPMX19_05956 0.43 +1.2 104,866 + MPMX19_05956 0.43 +0.3 104,866 + MPMX19_05956 0.43 +1.2 104,866 + MPMX19_05956 0.43 +0.5 104,866 + MPMX19_05956 0.43 -0.1 104,867 - MPMX19_05956 0.43 -0.7 104,867 - MPMX19_05956 0.43 -1.6 104,867 - MPMX19_05956 0.43 -0.5 104,867 - MPMX19_05956 0.43 -0.0 104,867 - MPMX19_05956 0.43 -0.3 104,867 - MPMX19_05956 0.43 -1.1 104,867 - MPMX19_05956 0.43 +0.3 104,867 - MPMX19_05956 0.43 -1.4 104,867 - MPMX19_05956 0.43 -0.5 104,867 - MPMX19_05956 0.43 +1.5 104,867 - MPMX19_05956 0.43 -0.1 104,867 - MPMX19_05956 0.43 +0.3 104,867 - MPMX19_05956 0.43 +0.6 104,867 - MPMX19_05956 0.43 -0.6 104,868 - MPMX19_05956 0.43 -0.7 105,232 + -0.3 105,232 + -0.5 105,233 - -0.1 105,233 - -1.2 105,244 - -1.2 105,352 + -0.6 105,353 - +0.9 105,355 + -1.0 105,355 + -0.1 105,355 + -0.7 105,355 + +0.3 105,355 + -0.4 105,355 + -1.8 105,355 + -0.1 105,356 - -0.1 105,356 - +0.6 105,356 - -1.7 105,356 - -0.5 105,356 - +1.0 105,356 - +0.0 105,356 - -0.1 105,424 + MPMX19_05957 0.16 +0.1 105,424 + MPMX19_05957 0.16 +0.0 105,424 + MPMX19_05957 0.16 -0.6 105,424 + MPMX19_05957 0.16 +0.4 105,425 - MPMX19_05957 0.16 -0.3 105,425 - MPMX19_05957 0.16 +0.0 105,425 - MPMX19_05957 0.16 +0.2 105,425 - MPMX19_05957 0.16 -0.5 105,425 - MPMX19_05957 0.16 -0.5 105,425 - MPMX19_05957 0.16 -0.2 105,425 - MPMX19_05957 0.16 -1.4 105,460 + MPMX19_05957 0.22 +0.2 105,460 + MPMX19_05957 0.22 -0.1 105,461 - MPMX19_05957 0.22 -0.1 105,461 - MPMX19_05957 0.22 -0.1 105,461 - MPMX19_05957 0.22 -0.0 105,691 + MPMX19_05957 0.59 -1.1 105,691 + MPMX19_05957 0.59 -0.2 105,691 + MPMX19_05957 0.59 -0.5 105,691 + MPMX19_05957 0.59 +0.1 105,691 + MPMX19_05957 0.59 -1.0 105,691 + MPMX19_05957 0.59 -0.5 105,691 + MPMX19_05957 0.59 -1.5 105,691 + MPMX19_05957 0.59 -1.9 105,691 + MPMX19_05957 0.59 -0.1 105,691 + MPMX19_05957 0.59 -0.6 105,691 + MPMX19_05957 0.59 -1.1 105,691 + MPMX19_05957 0.59 +0.6 105,691 + MPMX19_05957 0.59 -0.4 105,691 + MPMX19_05957 0.59 +0.1 105,691 + MPMX19_05957 0.59 -0.3 105,691 + MPMX19_05957 0.59 -1.2 105,691 + MPMX19_05957 0.59 +0.5 105,691 + MPMX19_05957 0.59 +1.2 105,692 - MPMX19_05957 0.60 +0.6 105,692 - MPMX19_05957 0.60 -1.2 105,692 - MPMX19_05957 0.60 -0.5 105,692 - MPMX19_05957 0.60 +1.5 105,692 - MPMX19_05957 0.60 -0.4 105,692 - MPMX19_05957 0.60 +0.2 105,692 - MPMX19_05957 0.60 -0.0 105,692 - MPMX19_05957 0.60 -1.4 105,692 - MPMX19_05957 0.60 -0.6 105,692 - MPMX19_05957 0.60 -0.2 105,692 - MPMX19_05957 0.60 +1.0 105,692 - MPMX19_05957 0.60 +0.1 105,692 - MPMX19_05957 0.60 -0.9 105,692 - MPMX19_05957 0.60 +0.5 105,692 - MPMX19_05957 0.60 -0.6 105,692 - MPMX19_05957 0.60 +1.8 105,693 - MPMX19_05957 0.60 +0.0 105,781 + MPMX19_05957 0.74 +1.0 105,781 + MPMX19_05957 0.74 -0.1 105,781 + MPMX19_05957 0.74 +0.8 105,781 + MPMX19_05957 0.74 -1.4 105,782 - MPMX19_05957 0.74 +0.5 105,782 - MPMX19_05957 0.74 +0.2 105,782 - MPMX19_05957 0.74 -0.7 105,782 - MPMX19_05957 0.74 -2.6 105,782 - MPMX19_05957 0.74 -0.6 105,782 - MPMX19_05957 0.74 +0.2 105,782 - MPMX19_05957 0.74 -1.4 105,961 + +2.2 105,962 - -0.1 105,962 - -0.5 105,962 - -0.0 105,962 - +0.2 105,962 - -2.1 106,001 + +1.9 106,001 + +0.2 106,001 + -1.0 106,001 + -0.9 106,002 - +0.0 106,002 - -0.2 106,002 - -0.7 106,002 - -0.7 106,002 - -0.5 106,002 - -0.6 106,002 - -1.0 106,002 - -0.4 106,002 - +0.2 106,003 + +0.8 106,003 + -1.8 106,003 + +0.4 106,003 + -1.4 106,003 + +1.6 106,003 + +1.2 106,003 + -0.5 106,003 + -1.1 106,003 + -0.9 106,003 + +1.5 106,003 + +1.8 106,003 + -1.6 106,004 - -0.8 106,004 - +0.3 106,004 - +0.5 106,004 - -0.4 106,004 - -1.6 106,004 - -1.5 106,004 - -0.0 106,004 - +1.0 106,035 + -0.1 106,035 + -1.2 106,035 + -1.7 106,035 + -0.7 106,035 + -1.4 106,036 - -0.3 106,036 - -0.7 106,044 + -1.6 106,044 + -0.6 106,045 - -1.3 106,045 - +0.2 106,050 + -0.9 106,050 + +1.4 106,050 + +1.0 106,051 - +0.2 106,051 - -0.1 106,051 - -0.8 106,117 + -2.6 106,117 + -0.2 106,117 + -1.3 106,117 + -1.9 106,117 + -0.5 106,117 + -1.0 106,117 + -0.6 106,117 + -1.6 106,117 + +0.0 106,117 + -0.6 106,117 + -1.1 106,118 - +1.7 106,118 - -0.1 106,118 - -1.0 106,118 - +0.5 106,118 - -1.0 106,118 - -1.4 106,118 - -1.4 106,118 - -0.5 106,118 - -0.4 106,122 + -0.4 106,122 + -0.7 106,122 + +0.0 106,122 + +1.8 106,122 + +1.8 106,122 + -1.0 106,122 + -1.5 106,122 + +0.5 106,122 + +0.0 106,122 + -1.6 106,122 + +0.2 106,122 + -0.4 106,122 + +0.9 106,122 + -0.4 106,122 + -0.2 106,123 - -2.2 106,123 - +0.6 106,123 - -0.4 106,123 - +1.1 106,123 - -0.1 106,123 - +1.2 106,123 - +0.1 106,123 - +0.3 106,123 - -0.2 106,123 - +1.2 106,123 - -0.8 106,123 - +0.3 106,316 - MPMX19_05958 0.13 -1.6 106,321 + MPMX19_05958 0.13 -0.2 106,321 + MPMX19_05958 0.13 -0.8 106,321 + MPMX19_05958 0.13 +0.0 106,321 + MPMX19_05958 0.13 -1.1 106,322 - MPMX19_05958 0.13 -0.2 106,322 - MPMX19_05958 0.13 -1.0 106,322 - MPMX19_05958 0.13 -1.7 106,322 - MPMX19_05958 0.13 -2.5 106,405 + MPMX19_05958 0.19 -0.8 106,406 - MPMX19_05958 0.19 -0.6 106,912 + MPMX19_05958 0.51 -2.0 106,912 + MPMX19_05958 0.51 -2.0 106,912 + MPMX19_05958 0.51 +0.5 106,912 + MPMX19_05958 0.51 -1.0 106,912 + MPMX19_05958 0.51 -1.5 106,912 + MPMX19_05958 0.51 +0.1 106,912 + MPMX19_05958 0.51 +0.2 106,912 + MPMX19_05958 0.51 +0.5 106,912 + MPMX19_05958 0.51 -2.7 106,912 + MPMX19_05958 0.51 -0.3 106,912 + MPMX19_05958 0.51 +0.5 106,912 + MPMX19_05958 0.51 -0.2 106,912 + MPMX19_05958 0.51 +0.0 106,912 + MPMX19_05958 0.51 -1.0 106,913 - MPMX19_05958 0.51 +0.6 106,913 - MPMX19_05958 0.51 -2.8 106,913 - MPMX19_05958 0.51 -0.8 106,913 - MPMX19_05958 0.51 +0.3 106,913 - MPMX19_05958 0.51 -0.4 106,913 - MPMX19_05958 0.51 +0.8 106,913 - MPMX19_05958 0.51 -0.1 106,913 - MPMX19_05958 0.51 +0.6 106,913 - MPMX19_05958 0.51 -1.2 106,913 - MPMX19_05958 0.51 -1.9
Or see this region's nucleotide sequence