Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05952 and MPMX19_05953 are separated by 89 nucleotides MPMX19_05953 and MPMX19_05954 are separated by 87 nucleotides MPMX19_05954 and MPMX19_05955 are separated by 207 nucleotides
MPMX19_05952: MPMX19_05952 - hypothetical protein, at 99,275 to 100,270
_05952
MPMX19_05953: MPMX19_05953 - hypothetical protein, at 100,360 to 100,593
_05953
MPMX19_05954: MPMX19_05954 - hypothetical protein, at 100,681 to 103,374
_05954
MPMX19_05955: MPMX19_05955 - Riboflavin transporter, at 103,582 to 104,520
_05955
Position (kb) 100
101
102
103
104 Strain fitness (log2 ratio) -2
-1
0
1
2 at 99.882 kb on - strand, within MPMX19_05952 at 99.882 kb on - strand, within MPMX19_05952 at 100.013 kb on + strand, within MPMX19_05952 at 100.013 kb on + strand, within MPMX19_05952 at 100.013 kb on + strand, within MPMX19_05952 at 100.013 kb on + strand, within MPMX19_05952 at 100.013 kb on + strand, within MPMX19_05952 at 100.013 kb on + strand, within MPMX19_05952 at 100.013 kb on + strand, within MPMX19_05952 at 100.013 kb on + strand, within MPMX19_05952 at 100.013 kb on + strand, within MPMX19_05952 at 100.013 kb on + strand, within MPMX19_05952 at 100.014 kb on - strand, within MPMX19_05952 at 100.014 kb on - strand, within MPMX19_05952 at 100.014 kb on - strand, within MPMX19_05952 at 100.014 kb on - strand, within MPMX19_05952 at 100.014 kb on - strand, within MPMX19_05952 at 100.014 kb on - strand, within MPMX19_05952 at 100.014 kb on - strand, within MPMX19_05952 at 100.097 kb on + strand, within MPMX19_05952 at 100.097 kb on + strand, within MPMX19_05952 at 100.097 kb on + strand, within MPMX19_05952 at 100.098 kb on - strand, within MPMX19_05952 at 100.098 kb on - strand, within MPMX19_05952 at 100.098 kb on - strand, within MPMX19_05952 at 100.660 kb on + strand at 100.661 kb on - strand at 100.661 kb on - strand at 100.709 kb on + strand at 100.709 kb on + strand at 100.709 kb on + strand at 100.710 kb on - strand at 100.710 kb on - strand at 100.710 kb on - strand at 100.710 kb on - strand at 100.710 kb on - strand at 100.710 kb on - strand at 100.737 kb on - strand at 100.835 kb on + strand at 101.882 kb on + strand, within MPMX19_05954 at 101.882 kb on + strand, within MPMX19_05954 at 101.882 kb on + strand, within MPMX19_05954 at 101.883 kb on - strand, within MPMX19_05954 at 101.883 kb on - strand, within MPMX19_05954 at 101.883 kb on - strand, within MPMX19_05954 at 101.883 kb on - strand, within MPMX19_05954 at 101.883 kb on - strand, within MPMX19_05954 at 101.883 kb on - strand, within MPMX19_05954 at 102.222 kb on + strand, within MPMX19_05954 at 102.222 kb on + strand, within MPMX19_05954 at 102.223 kb on - strand, within MPMX19_05954 at 102.223 kb on - strand, within MPMX19_05954 at 102.305 kb on + strand, within MPMX19_05954 at 102.323 kb on + strand, within MPMX19_05954 at 102.323 kb on + strand, within MPMX19_05954 at 102.323 kb on + strand, within MPMX19_05954 at 102.324 kb on - strand, within MPMX19_05954 at 102.324 kb on - strand, within MPMX19_05954 at 102.324 kb on - strand, within MPMX19_05954 at 102.324 kb on - strand, within MPMX19_05954 at 102.324 kb on - strand, within MPMX19_05954 at 102.324 kb on - strand, within MPMX19_05954 at 102.720 kb on - strand, within MPMX19_05954 at 102.878 kb on + strand, within MPMX19_05954 at 102.878 kb on + strand, within MPMX19_05954 at 102.879 kb on - strand, within MPMX19_05954 at 102.879 kb on - strand, within MPMX19_05954 at 102.879 kb on - strand, within MPMX19_05954 at 103.117 kb on + strand at 103.117 kb on + strand at 103.117 kb on + strand at 103.117 kb on + strand at 103.117 kb on + strand at 103.117 kb on + strand at 103.117 kb on + strand at 103.118 kb on - strand at 103.118 kb on - strand at 103.118 kb on - strand at 103.118 kb on - strand at 103.393 kb on + strand at 103.393 kb on + strand at 103.394 kb on - strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.457 kb on + strand at 103.457 kb on + strand at 103.457 kb on + strand at 103.457 kb on + strand at 103.457 kb on + strand at 103.457 kb on + strand at 103.457 kb on + strand at 103.457 kb on + strand at 103.458 kb on - strand at 103.458 kb on - strand at 103.458 kb on - strand at 103.458 kb on - strand at 103.458 kb on - strand at 103.458 kb on - strand at 103.458 kb on - strand at 103.458 kb on - strand at 103.458 kb on - strand at 103.458 kb on - strand at 103.458 kb on - strand at 103.458 kb on - strand at 103.509 kb on + strand at 103.509 kb on + strand at 103.509 kb on + strand at 103.509 kb on + strand at 103.510 kb on - strand at 103.510 kb on - strand at 103.510 kb on - strand at 103.510 kb on - strand at 103.538 kb on + strand at 103.538 kb on + strand at 103.539 kb on - strand at 103.539 kb on - strand at 103.652 kb on + strand at 103.652 kb on + strand at 103.652 kb on + strand at 103.652 kb on + strand at 103.652 kb on + strand at 103.652 kb on + strand at 103.652 kb on + strand at 103.652 kb on + strand at 103.652 kb on + strand at 103.652 kb on + strand at 103.652 kb on + strand at 103.652 kb on + strand at 103.652 kb on + strand at 103.653 kb on - strand at 103.653 kb on - strand at 103.653 kb on - strand at 103.653 kb on - strand at 103.653 kb on - strand at 103.653 kb on - strand at 103.653 kb on - strand at 103.653 kb on - strand at 103.653 kb on - strand at 103.653 kb on - strand at 103.653 kb on - strand at 103.653 kb on - strand at 103.653 kb on - strand at 103.757 kb on + strand, within MPMX19_05955 at 103.757 kb on + strand, within MPMX19_05955 at 103.757 kb on + strand, within MPMX19_05955 at 103.757 kb on + strand, within MPMX19_05955 at 103.757 kb on + strand, within MPMX19_05955 at 103.758 kb on - strand, within MPMX19_05955 at 103.758 kb on - strand, within MPMX19_05955 at 103.758 kb on - strand, within MPMX19_05955 at 103.758 kb on - strand, within MPMX19_05955 at 103.796 kb on + strand, within MPMX19_05955 at 103.797 kb on - strand, within MPMX19_05955 at 103.797 kb on - strand, within MPMX19_05955 at 103.934 kb on + strand, within MPMX19_05955 at 103.934 kb on + strand, within MPMX19_05955 at 103.934 kb on + strand, within MPMX19_05955 at 103.934 kb on + strand, within MPMX19_05955 at 103.934 kb on + strand, within MPMX19_05955 at 103.934 kb on + strand, within MPMX19_05955 at 103.934 kb on + strand, within MPMX19_05955 at 103.934 kb on + strand, within MPMX19_05955 at 103.934 kb on + strand, within MPMX19_05955 at 103.934 kb on + strand, within MPMX19_05955 at 103.935 kb on - strand, within MPMX19_05955 at 103.935 kb on - strand, within MPMX19_05955 at 103.935 kb on - strand, within MPMX19_05955 at 103.935 kb on - strand, within MPMX19_05955 at 103.935 kb on - strand, within MPMX19_05955 at 103.935 kb on - strand, within MPMX19_05955 at 103.935 kb on - strand, within MPMX19_05955 at 104.265 kb on + strand, within MPMX19_05955 at 104.266 kb on - strand, within MPMX19_05955 at 104.266 kb on - strand, within MPMX19_05955 at 104.280 kb on - strand, within MPMX19_05955 at 104.280 kb on - strand, within MPMX19_05955
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 99,882 - MPMX19_05952 0.61 -1.1 99,882 - MPMX19_05952 0.61 -0.4 100,013 + MPMX19_05952 0.74 +0.1 100,013 + MPMX19_05952 0.74 -0.2 100,013 + MPMX19_05952 0.74 -0.8 100,013 + MPMX19_05952 0.74 -2.0 100,013 + MPMX19_05952 0.74 -0.3 100,013 + MPMX19_05952 0.74 -0.8 100,013 + MPMX19_05952 0.74 -1.3 100,013 + MPMX19_05952 0.74 +0.4 100,013 + MPMX19_05952 0.74 -1.0 100,013 + MPMX19_05952 0.74 +1.0 100,014 - MPMX19_05952 0.74 +1.8 100,014 - MPMX19_05952 0.74 -1.5 100,014 - MPMX19_05952 0.74 -1.2 100,014 - MPMX19_05952 0.74 -0.9 100,014 - MPMX19_05952 0.74 +0.2 100,014 - MPMX19_05952 0.74 -0.5 100,014 - MPMX19_05952 0.74 -0.3 100,097 + MPMX19_05952 0.83 -1.8 100,097 + MPMX19_05952 0.83 -0.1 100,097 + MPMX19_05952 0.83 -0.2 100,098 - MPMX19_05952 0.83 -0.5 100,098 - MPMX19_05952 0.83 -0.5 100,098 - MPMX19_05952 0.83 -0.4 100,660 + -1.5 100,661 - -1.1 100,661 - -0.1 100,709 + -0.2 100,709 + -0.1 100,709 + +0.0 100,710 - +0.5 100,710 - +0.2 100,710 - -0.9 100,710 - -0.6 100,710 - -0.6 100,710 - +0.9 100,737 - +0.8 100,835 + +0.4 101,882 + MPMX19_05954 0.45 +0.4 101,882 + MPMX19_05954 0.45 +1.2 101,882 + MPMX19_05954 0.45 -0.1 101,883 - MPMX19_05954 0.45 +0.3 101,883 - MPMX19_05954 0.45 -0.4 101,883 - MPMX19_05954 0.45 +0.6 101,883 - MPMX19_05954 0.45 -0.5 101,883 - MPMX19_05954 0.45 -0.2 101,883 - MPMX19_05954 0.45 -0.4 102,222 + MPMX19_05954 0.57 -0.8 102,222 + MPMX19_05954 0.57 -0.6 102,223 - MPMX19_05954 0.57 -2.0 102,223 - MPMX19_05954 0.57 -1.5 102,305 + MPMX19_05954 0.60 -1.1 102,323 + MPMX19_05954 0.61 -0.1 102,323 + MPMX19_05954 0.61 -2.0 102,323 + MPMX19_05954 0.61 -0.1 102,324 - MPMX19_05954 0.61 -0.1 102,324 - MPMX19_05954 0.61 -1.1 102,324 - MPMX19_05954 0.61 +0.2 102,324 - MPMX19_05954 0.61 -0.6 102,324 - MPMX19_05954 0.61 +1.6 102,324 - MPMX19_05954 0.61 -2.2 102,720 - MPMX19_05954 0.76 -2.1 102,878 + MPMX19_05954 0.82 -0.0 102,878 + MPMX19_05954 0.82 +0.1 102,879 - MPMX19_05954 0.82 -1.7 102,879 - MPMX19_05954 0.82 -0.8 102,879 - MPMX19_05954 0.82 -0.1 103,117 + -0.1 103,117 + -0.6 103,117 + -0.6 103,117 + +0.9 103,117 + +1.2 103,117 + -0.5 103,117 + -0.8 103,118 - +0.2 103,118 - +0.8 103,118 - -1.2 103,118 - -0.6 103,393 + -1.1 103,393 + -1.4 103,394 - -1.0 103,455 + -1.4 103,455 + -0.2 103,455 + +1.0 103,455 + -0.1 103,455 + +0.3 103,455 + -0.6 103,455 + -2.0 103,455 + -0.2 103,455 + -0.4 103,455 + -0.5 103,455 + -1.8 103,455 + -0.7 103,455 + -0.1 103,455 + -1.5 103,455 + +0.7 103,455 + -1.1 103,455 + +0.2 103,455 + -1.1 103,455 + -2.2 103,455 + +0.9 103,455 + -0.7 103,455 + -1.3 103,456 - -0.5 103,456 - -0.8 103,456 - -0.2 103,456 - -0.1 103,456 - -0.7 103,456 - -0.6 103,456 - -1.0 103,456 - -0.9 103,456 - +0.2 103,456 - -1.7 103,456 - +0.8 103,456 - -0.3 103,456 - -0.4 103,456 - -0.5 103,456 - -0.8 103,456 - -0.8 103,456 - -0.2 103,456 - -0.4 103,456 - -1.8 103,456 - -1.7 103,456 - +0.4 103,456 - +1.5 103,457 + -0.4 103,457 + -1.0 103,457 + -0.4 103,457 + +1.1 103,457 + -0.4 103,457 + +0.6 103,457 + -1.5 103,457 + +0.1 103,458 - -1.7 103,458 - -2.5 103,458 - +0.1 103,458 - -1.5 103,458 - +1.2 103,458 - -0.1 103,458 - +0.5 103,458 - -1.3 103,458 - -1.2 103,458 - +0.5 103,458 - -1.2 103,458 - +0.4 103,509 + -0.1 103,509 + +0.4 103,509 + +0.6 103,509 + -0.4 103,510 - -1.1 103,510 - -1.0 103,510 - +0.9 103,510 - -1.1 103,538 + -0.4 103,538 + -0.1 103,539 - -1.8 103,539 - -0.0 103,652 + -0.9 103,652 + -1.0 103,652 + -0.7 103,652 + -1.1 103,652 + -1.0 103,652 + -0.7 103,652 + -0.1 103,652 + +0.2 103,652 + -0.9 103,652 + -0.6 103,652 + +0.2 103,652 + -0.3 103,652 + -0.9 103,653 - +0.2 103,653 - -0.4 103,653 - -0.8 103,653 - +1.2 103,653 - -1.5 103,653 - +1.0 103,653 - +0.8 103,653 - -1.3 103,653 - +0.3 103,653 - +0.5 103,653 - -1.6 103,653 - -0.4 103,653 - -1.2 103,757 + MPMX19_05955 0.19 -0.4 103,757 + MPMX19_05955 0.19 -1.9 103,757 + MPMX19_05955 0.19 +0.3 103,757 + MPMX19_05955 0.19 -0.0 103,757 + MPMX19_05955 0.19 -2.3 103,758 - MPMX19_05955 0.19 -0.8 103,758 - MPMX19_05955 0.19 -0.2 103,758 - MPMX19_05955 0.19 -0.7 103,758 - MPMX19_05955 0.19 -0.4 103,796 + MPMX19_05955 0.23 -1.0 103,797 - MPMX19_05955 0.23 -2.6 103,797 - MPMX19_05955 0.23 -2.0 103,934 + MPMX19_05955 0.37 -1.6 103,934 + MPMX19_05955 0.37 +0.2 103,934 + MPMX19_05955 0.37 -1.4 103,934 + MPMX19_05955 0.37 -1.6 103,934 + MPMX19_05955 0.37 +1.9 103,934 + MPMX19_05955 0.37 -0.6 103,934 + MPMX19_05955 0.37 -1.7 103,934 + MPMX19_05955 0.37 +0.6 103,934 + MPMX19_05955 0.37 +0.9 103,934 + MPMX19_05955 0.37 -1.4 103,935 - MPMX19_05955 0.38 +1.1 103,935 - MPMX19_05955 0.38 +0.3 103,935 - MPMX19_05955 0.38 -1.0 103,935 - MPMX19_05955 0.38 -0.1 103,935 - MPMX19_05955 0.38 -0.5 103,935 - MPMX19_05955 0.38 -1.7 103,935 - MPMX19_05955 0.38 -0.4 104,265 + MPMX19_05955 0.73 +2.6 104,266 - MPMX19_05955 0.73 -0.7 104,266 - MPMX19_05955 0.73 +0.6 104,280 - MPMX19_05955 0.74 -0.2 104,280 - MPMX19_05955 0.74 +0.5
Or see this region's nucleotide sequence