Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05952 and MPMX19_05953 are separated by 89 nucleotides MPMX19_05953 and MPMX19_05954 are separated by 87 nucleotides
MPMX19_05952: MPMX19_05952 - hypothetical protein, at 99,275 to 100,270
_05952
MPMX19_05953: MPMX19_05953 - hypothetical protein, at 100,360 to 100,593
_05953
MPMX19_05954: MPMX19_05954 - hypothetical protein, at 100,681 to 103,374
_05954
Position (kb) 100
101 Strain fitness (log2 ratio) -2
-1
0
1
2 at 99.455 kb on - strand, within MPMX19_05952 at 99.514 kb on - strand, within MPMX19_05952 at 99.514 kb on - strand, within MPMX19_05952 at 99.656 kb on + strand, within MPMX19_05952 at 99.657 kb on - strand, within MPMX19_05952 at 99.657 kb on - strand, within MPMX19_05952 at 99.882 kb on - strand, within MPMX19_05952 at 99.882 kb on - strand, within MPMX19_05952 at 100.013 kb on + strand, within MPMX19_05952 at 100.013 kb on + strand, within MPMX19_05952 at 100.013 kb on + strand, within MPMX19_05952 at 100.013 kb on + strand, within MPMX19_05952 at 100.013 kb on + strand, within MPMX19_05952 at 100.013 kb on + strand, within MPMX19_05952 at 100.013 kb on + strand, within MPMX19_05952 at 100.013 kb on + strand, within MPMX19_05952 at 100.013 kb on + strand, within MPMX19_05952 at 100.013 kb on + strand, within MPMX19_05952 at 100.014 kb on - strand, within MPMX19_05952 at 100.014 kb on - strand, within MPMX19_05952 at 100.014 kb on - strand, within MPMX19_05952 at 100.014 kb on - strand, within MPMX19_05952 at 100.014 kb on - strand, within MPMX19_05952 at 100.014 kb on - strand, within MPMX19_05952 at 100.014 kb on - strand, within MPMX19_05952 at 100.097 kb on + strand, within MPMX19_05952 at 100.097 kb on + strand, within MPMX19_05952 at 100.097 kb on + strand, within MPMX19_05952 at 100.098 kb on - strand, within MPMX19_05952 at 100.098 kb on - strand, within MPMX19_05952 at 100.098 kb on - strand, within MPMX19_05952 at 100.660 kb on + strand at 100.661 kb on - strand at 100.661 kb on - strand at 100.709 kb on + strand at 100.709 kb on + strand at 100.709 kb on + strand at 100.710 kb on - strand at 100.710 kb on - strand at 100.710 kb on - strand at 100.710 kb on - strand at 100.710 kb on - strand at 100.710 kb on - strand at 100.737 kb on - strand at 100.835 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 99,455 - MPMX19_05952 0.18 -0.4 99,514 - MPMX19_05952 0.24 +0.4 99,514 - MPMX19_05952 0.24 -0.5 99,656 + MPMX19_05952 0.38 +0.1 99,657 - MPMX19_05952 0.38 +0.2 99,657 - MPMX19_05952 0.38 -0.5 99,882 - MPMX19_05952 0.61 -1.1 99,882 - MPMX19_05952 0.61 -0.4 100,013 + MPMX19_05952 0.74 +0.1 100,013 + MPMX19_05952 0.74 -0.2 100,013 + MPMX19_05952 0.74 -0.8 100,013 + MPMX19_05952 0.74 -2.0 100,013 + MPMX19_05952 0.74 -0.3 100,013 + MPMX19_05952 0.74 -0.8 100,013 + MPMX19_05952 0.74 -1.3 100,013 + MPMX19_05952 0.74 +0.4 100,013 + MPMX19_05952 0.74 -1.0 100,013 + MPMX19_05952 0.74 +1.0 100,014 - MPMX19_05952 0.74 +1.8 100,014 - MPMX19_05952 0.74 -1.5 100,014 - MPMX19_05952 0.74 -1.2 100,014 - MPMX19_05952 0.74 -0.9 100,014 - MPMX19_05952 0.74 +0.2 100,014 - MPMX19_05952 0.74 -0.5 100,014 - MPMX19_05952 0.74 -0.3 100,097 + MPMX19_05952 0.83 -1.8 100,097 + MPMX19_05952 0.83 -0.1 100,097 + MPMX19_05952 0.83 -0.2 100,098 - MPMX19_05952 0.83 -0.5 100,098 - MPMX19_05952 0.83 -0.5 100,098 - MPMX19_05952 0.83 -0.4 100,660 + -1.5 100,661 - -1.1 100,661 - -0.1 100,709 + -0.2 100,709 + -0.1 100,709 + +0.0 100,710 - +0.5 100,710 - +0.2 100,710 - -0.9 100,710 - -0.6 100,710 - -0.6 100,710 - +0.9 100,737 - +0.8 100,835 + +0.4
Or see this region's nucleotide sequence