Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05943

Experiment: NL-CCM, start OD=0.3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM, start OD=0.3
87,286	+		MPMX19_05942	0.47	+0.0
87,286	+		MPMX19_05942	0.47	-0.8
87,286	+		MPMX19_05942	0.47	+0.5
87,286	+		MPMX19_05942	0.47	-3.0
87,286	+		MPMX19_05942	0.47	-0.6
87,286	+		MPMX19_05942	0.47	-0.7
87,286	+		MPMX19_05942	0.47	+1.2
87,286	+		MPMX19_05942	0.47	-0.5
87,286	+		MPMX19_05942	0.47	-0.4
87,286	+		MPMX19_05942	0.47	-1.6
87,286	+		MPMX19_05942	0.47	-1.2
87,286	+		MPMX19_05942	0.47	-0.6
87,286	+		MPMX19_05942	0.47	-0.7
87,286	+		MPMX19_05942	0.47	-0.1
87,286	+		MPMX19_05942	0.47	+0.5
87,286	+		MPMX19_05942	0.47	+0.4
87,286	+		MPMX19_05942	0.47	-1.8
87,286	+		MPMX19_05942	0.47	-0.2
87,286	+		MPMX19_05942	0.47	-0.4
87,286	+		MPMX19_05942	0.47	+0.0
87,286	+		MPMX19_05942	0.47	-1.1
87,286	+		MPMX19_05942	0.47	+0.5
87,286	+		MPMX19_05942	0.47	+0.8
87,287	-		MPMX19_05942	0.47	-1.0
87,287	-		MPMX19_05942	0.47	-1.0
87,287	-		MPMX19_05942	0.47	-0.1
87,287	-		MPMX19_05942	0.47	-2.9
87,287	-		MPMX19_05942	0.47	-1.0
87,287	-		MPMX19_05942	0.47	-0.5
87,287	-		MPMX19_05942	0.47	-0.8
87,287	-		MPMX19_05942	0.47	-0.2
87,287	-		MPMX19_05942	0.47	-0.8
87,287	-		MPMX19_05942	0.47	-0.2
87,287	-		MPMX19_05942	0.47	+0.5
87,287	-		MPMX19_05942	0.47	+0.4
87,287	-		MPMX19_05942	0.47	-1.4
87,289	+		MPMX19_05942	0.47	-2.2
87,289	+		MPMX19_05942	0.47	-1.7
87,289	+		MPMX19_05942	0.47	-0.4
87,289	+		MPMX19_05942	0.47	-1.0
87,289	+		MPMX19_05942	0.47	-0.9
87,289	+		MPMX19_05942	0.47	-1.5
87,289	+		MPMX19_05942	0.47	-0.4
87,289	+		MPMX19_05942	0.47	-0.5
87,289	+		MPMX19_05942	0.47	-0.2
87,289	+		MPMX19_05942	0.47	-0.8
87,290	-		MPMX19_05942	0.47	-1.5
87,290	-		MPMX19_05942	0.47	-1.5
87,290	-		MPMX19_05942	0.47	-1.0
87,290	-		MPMX19_05942	0.47	-1.2
87,290	-		MPMX19_05942	0.47	-0.4
87,290	-		MPMX19_05942	0.47	-0.4
87,290	-		MPMX19_05942	0.47	-1.2
87,290	-		MPMX19_05942	0.47	-1.2
87,290	-		MPMX19_05942	0.47	-0.1
87,290	-		MPMX19_05942	0.47	-1.5
87,290	-		MPMX19_05942	0.47	-0.0
87,290	-		MPMX19_05942	0.47	-0.2
87,290	-		MPMX19_05942	0.47	-0.4
87,290	-		MPMX19_05942	0.47	-1.1
87,290	-		MPMX19_05942	0.47	+0.6
87,343	+		MPMX19_05942	0.51	+1.5
87,343	+		MPMX19_05942	0.51	-1.0
87,343	+		MPMX19_05942	0.51	+0.8
87,343	+		MPMX19_05942	0.51	+0.4
87,343	+		MPMX19_05942	0.51	-0.2
87,344	-		MPMX19_05942	0.51	-0.9
87,344	-		MPMX19_05942	0.51	-0.0
87,344	-		MPMX19_05942	0.51	+0.1
87,344	-		MPMX19_05942	0.51	+0.2
87,344	-		MPMX19_05942	0.51	+0.2
87,344	-		MPMX19_05942	0.51	+0.0
87,344	-		MPMX19_05942	0.51	+0.6
87,526	+		MPMX19_05942	0.64	+0.6
87,526	+		MPMX19_05942	0.64	-1.0
87,526	+		MPMX19_05942	0.64	-1.0
87,526	+		MPMX19_05942	0.64	+0.3
87,526	+		MPMX19_05942	0.64	-0.5
87,526	+		MPMX19_05942	0.64	-0.5
87,526	+		MPMX19_05942	0.64	+1.0
87,527	-		MPMX19_05942	0.64	-0.1
87,527	-		MPMX19_05942	0.64	-1.2
87,527	-		MPMX19_05942	0.64	+1.2
87,527	-		MPMX19_05942	0.64	+0.1
87,527	-		MPMX19_05942	0.64	-1.9
87,718	+		MPMX19_05942	0.78	-1.1
87,742	+		MPMX19_05942	0.80	+1.2
87,742	+		MPMX19_05942	0.80	-1.2
87,743	-		MPMX19_05942	0.80	-0.1
87,743	-		MPMX19_05942	0.80	-1.0
87,743	-		MPMX19_05942	0.80	+2.8
87,743	-		MPMX19_05942	0.80	-1.0
87,877	+		MPMX19_05942	0.90	-2.0
87,877	+		MPMX19_05942	0.90	-0.8
87,877	+		MPMX19_05942	0.90	+1.3
87,877	+		MPMX19_05942	0.90	+0.5
87,877	+		MPMX19_05942	0.90	-1.0
87,877	+		MPMX19_05942	0.90	-0.8
87,878	-		MPMX19_05942	0.90	-2.0
87,878	-		MPMX19_05942	0.90	-0.4
87,878	-		MPMX19_05942	0.90	-0.3
87,878	-		MPMX19_05942	0.90	-1.6
87,910	+				-1.0
87,910	+				+1.4
87,910	+				+1.2
87,910	+				-0.9
87,911	-				-0.8
87,911	-				-0.8
87,911	-				-1.0
87,917	-				-0.4
87,928	+				-0.8
87,928	+				+0.0
87,928	+				-1.0
87,928	+				+0.8
87,928	+				+0.6
87,928	+				+0.1
88,060	+				-0.3
88,060	+				-1.0
88,061	-				+0.5
88,061	-				-0.7
88,061	-				+0.0
88,061	-				-0.2
88,184	-				-1.9
88,184	-				+1.8
88,184	-				-2.3
88,192	+				+0.2
88,192	+				+0.5
88,192	+				+0.4
88,192	+				-0.8
88,192	+				+1.2
88,192	+				-0.4
88,193	-				+0.2
88,193	-				-2.0
88,193	-				-0.1
88,193	-				-1.9
88,198	+				-1.2
88,198	+				+0.2
88,198	+				-0.2
88,198	+				+0.1
88,198	+				+0.2
88,198	+				-1.6
88,199	-				+0.8
88,199	-				-0.7
88,199	-				-0.7
88,199	-				-2.0
88,217	+				+0.0
88,217	+				+0.0
88,217	+				-0.6
88,218	-				-0.1
88,228	+				-0.5
88,229	-				-0.4
88,255	-				-0.2
88,270	+		MPMX19_05943	0.10	+0.5
88,271	-		MPMX19_05943	0.10	+0.7
88,294	+		MPMX19_05943	0.13	+0.6
88,294	+		MPMX19_05943	0.13	+0.2
88,294	+		MPMX19_05943	0.13	-0.2
88,294	+		MPMX19_05943	0.13	-0.8
88,294	+		MPMX19_05943	0.13	+0.2
88,294	+		MPMX19_05943	0.13	-1.2
88,294	+		MPMX19_05943	0.13	-1.4
88,294	+		MPMX19_05943	0.13	-1.2
88,294	+		MPMX19_05943	0.13	-1.0
88,294	+		MPMX19_05943	0.13	+0.2
88,294	+		MPMX19_05943	0.13	+0.3
88,294	+		MPMX19_05943	0.13	-3.1
88,294	+		MPMX19_05943	0.13	-1.4
88,294	+		MPMX19_05943	0.13	+0.5
88,294	+		MPMX19_05943	0.13	-0.1
88,294	+		MPMX19_05943	0.13	-0.6
88,294	+		MPMX19_05943	0.13	-1.6
88,295	-		MPMX19_05943	0.13	-0.0
88,295	-		MPMX19_05943	0.13	-0.6
88,295	-		MPMX19_05943	0.13	+0.0
88,295	-		MPMX19_05943	0.13	+0.0
88,295	-		MPMX19_05943	0.13	-0.7
88,295	-		MPMX19_05943	0.13	-1.2
88,295	-		MPMX19_05943	0.13	-1.0
88,295	-		MPMX19_05943	0.13	-1.1
88,295	-		MPMX19_05943	0.13	-0.6
88,295	-		MPMX19_05943	0.13	-0.4
88,295	-		MPMX19_05943	0.13	-0.1
88,295	-		MPMX19_05943	0.13	-1.0
88,295	-		MPMX19_05943	0.13	-0.6
88,295	-		MPMX19_05943	0.13	-1.8
88,295	-		MPMX19_05943	0.13	-1.5
88,295	-		MPMX19_05943	0.13	-0.5
88,295	-		MPMX19_05943	0.13	-0.9
88,779	+		MPMX19_05943	0.69	+0.2
88,780	-		MPMX19_05943	0.69	-2.9
88,780	-		MPMX19_05943	0.69	-1.0
89,061	+				-0.8
89,103	+				-0.5
89,104	-				-0.7
89,104	-				+0.4
89,104	-				-0.4
89,104	-				-0.8
89,104	-				+0.1
89,139	-				+0.9
89,139	-				-0.3
89,489	+		MPMX19_05944	0.11	-0.1
89,489	+		MPMX19_05944	0.11	+0.7
89,489	+		MPMX19_05944	0.11	-1.5
89,489	+		MPMX19_05944	0.11	-1.1
89,489	+		MPMX19_05944	0.11	-0.4
89,504	+		MPMX19_05944	0.12	-1.1
89,504	+		MPMX19_05944	0.12	-2.0
89,504	+		MPMX19_05944	0.12	-0.1
89,504	+		MPMX19_05944	0.12	-1.4
89,504	+		MPMX19_05944	0.12	-0.6
89,504	+		MPMX19_05944	0.12	-1.1
89,504	+		MPMX19_05944	0.12	-1.5
89,504	+		MPMX19_05944	0.12	-0.2
89,504	+		MPMX19_05944	0.12	+0.3
89,504	+		MPMX19_05944	0.12	-1.2
89,504	+		MPMX19_05944	0.12	-1.5
89,504	+		MPMX19_05944	0.12	-0.4
89,504	+		MPMX19_05944	0.12	+0.4
89,504	+		MPMX19_05944	0.12	-1.0
89,504	+		MPMX19_05944	0.12	+0.8
89,504	+		MPMX19_05944	0.12	+0.4
89,504	+		MPMX19_05944	0.12	-1.2
89,505	-		MPMX19_05944	0.13	+0.2
89,505	-		MPMX19_05944	0.13	-0.8
89,505	-		MPMX19_05944	0.13	+0.4
89,505	-		MPMX19_05944	0.13	-0.1
89,505	-		MPMX19_05944	0.13	-0.4
89,505	-		MPMX19_05944	0.13	+0.9
89,505	-		MPMX19_05944	0.13	-1.1
89,505	-		MPMX19_05944	0.13	-0.8
89,528	+		MPMX19_05944	0.15	-0.8
89,528	+		MPMX19_05944	0.15	-0.6
89,528	+		MPMX19_05944	0.15	-1.9
89,528	+		MPMX19_05944	0.15	-0.3
89,528	+		MPMX19_05944	0.15	-0.1
89,528	+		MPMX19_05944	0.15	-1.2
89,528	+		MPMX19_05944	0.15	+1.4
89,528	+		MPMX19_05944	0.15	-1.1
89,528	+		MPMX19_05944	0.15	-1.2
89,529	-		MPMX19_05944	0.15	-0.2
89,529	-		MPMX19_05944	0.15	+0.4
89,529	-		MPMX19_05944	0.15	+0.0
89,529	-		MPMX19_05944	0.15	-1.0
89,529	-		MPMX19_05944	0.15	-1.1
89,529	-		MPMX19_05944	0.15	-1.0
89,529	-		MPMX19_05944	0.15	-0.1
89,529	-		MPMX19_05944	0.15	-0.4
89,663	+		MPMX19_05944	0.28	-1.6
89,663	+		MPMX19_05944	0.28	-1.1
89,663	+		MPMX19_05944	0.28	+0.9
89,663	+		MPMX19_05944	0.28	-0.4
89,663	+		MPMX19_05944	0.28	-1.4
89,664	-		MPMX19_05944	0.28	+1.4
89,664	-		MPMX19_05944	0.28	+1.4
89,664	-		MPMX19_05944	0.28	+1.0
89,861	+		MPMX19_05944	0.48	-0.6
89,861	+		MPMX19_05944	0.48	-0.8
89,861	+		MPMX19_05944	0.48	-2.2
89,861	+		MPMX19_05944	0.48	+1.2
89,861	+		MPMX19_05944	0.48	-1.1
89,861	+		MPMX19_05944	0.48	-0.4
89,861	+		MPMX19_05944	0.48	+0.2
89,861	+		MPMX19_05944	0.48	+0.4
89,861	+		MPMX19_05944	0.48	-0.1
89,861	+		MPMX19_05944	0.48	-0.1
89,861	+		MPMX19_05944	0.48	+0.3
89,861	+		MPMX19_05944	0.48	-0.7
89,861	+		MPMX19_05944	0.48	-0.7
89,861	+		MPMX19_05944	0.48	-0.2
89,862	-		MPMX19_05944	0.48	+0.5
89,862	-		MPMX19_05944	0.48	-1.7
89,862	-		MPMX19_05944	0.48	+0.6
89,862	-		MPMX19_05944	0.48	-1.7
89,862	-		MPMX19_05944	0.48	-1.0
89,862	-		MPMX19_05944	0.48	-1.7
89,862	-		MPMX19_05944	0.48	+0.8
89,862	-		MPMX19_05944	0.48	-1.2
89,862	-		MPMX19_05944	0.48	+0.3
89,862	-		MPMX19_05944	0.48	+0.2
89,862	-		MPMX19_05944	0.48	-2.0
89,862	-		MPMX19_05944	0.48	-1.6
89,862	-		MPMX19_05944	0.48	+0.8
89,862	-		MPMX19_05944	0.48	-0.1
89,862	-		MPMX19_05944	0.48	-0.2
89,862	-		MPMX19_05944	0.48	-0.1
89,862	-		MPMX19_05944	0.48	-0.9
89,862	-		MPMX19_05944	0.48	-0.6
89,862	-		MPMX19_05944	0.48	-1.7
89,870	+		MPMX19_05944	0.49	+0.6
89,870	+		MPMX19_05944	0.49	-2.0
89,871	-		MPMX19_05944	0.49	+1.4
89,984	+		MPMX19_05944	0.60	-1.1
89,984	+		MPMX19_05944	0.60	-1.7
89,985	-		MPMX19_05944	0.60	-0.1
89,985	-		MPMX19_05944	0.60	+1.0
89,985	-		MPMX19_05944	0.60	-0.8
89,985	-		MPMX19_05944	0.60	-0.1
89,985	-		MPMX19_05944	0.60	-1.0
89,985	-		MPMX19_05944	0.60	+0.6
90,038	+		MPMX19_05944	0.65	-0.8
90,038	+		MPMX19_05944	0.65	+0.6
90,038	+		MPMX19_05944	0.65	-2.4
90,038	+		MPMX19_05944	0.65	+0.2
90,038	+		MPMX19_05944	0.65	-1.1
90,038	+		MPMX19_05944	0.65	+0.3
90,038	+		MPMX19_05944	0.65	-1.3
90,038	+		MPMX19_05944	0.65	-0.8
90,038	+		MPMX19_05944	0.65	+1.9
90,038	+		MPMX19_05944	0.65	+0.6
90,038	+		MPMX19_05944	0.65	-1.0
90,039	-		MPMX19_05944	0.65	-0.7
90,039	-		MPMX19_05944	0.65	-0.8
90,039	-		MPMX19_05944	0.65	-1.7
90,039	-		MPMX19_05944	0.65	-0.7
90,039	-		MPMX19_05944	0.65	-0.2
90,039	-		MPMX19_05944	0.65	-0.8