Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05937

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05936 and MPMX19_05937 are separated by 146 nucleotidesMPMX19_05937 and MPMX19_05938 are separated by 276 nucleotides MPMX19_05936: MPMX19_05936 - Alpha-galactosidase, at 78,582 to 79,880 _05936 MPMX19_05937: MPMX19_05937 - hypothetical protein, at 80,027 to 80,833 _05937 MPMX19_05938: MPMX19_05938 - Beta-glucosidase A, at 81,110 to 82,474 _05938 Position (kb) 80 81Strain fitness (log2 ratio) -2 -1 0 1at 79.087 kb on + strand, within MPMX19_05936at 79.088 kb on - strand, within MPMX19_05936at 79.088 kb on - strand, within MPMX19_05936at 79.088 kb on - strand, within MPMX19_05936at 79.088 kb on - strand, within MPMX19_05936at 79.213 kb on + strand, within MPMX19_05936at 79.213 kb on + strand, within MPMX19_05936at 79.213 kb on + strand, within MPMX19_05936at 79.213 kb on + strand, within MPMX19_05936at 79.214 kb on - strand, within MPMX19_05936at 79.214 kb on - strand, within MPMX19_05936at 79.214 kb on - strand, within MPMX19_05936at 79.214 kb on - strand, within MPMX19_05936at 79.745 kb on + strand, within MPMX19_05936at 79.934 kb on + strandat 79.935 kb on - strandat 79.935 kb on - strandat 79.935 kb on - strandat 79.979 kb on + strandat 79.979 kb on + strandat 79.979 kb on + strandat 79.979 kb on + strandat 79.979 kb on + strandat 79.979 kb on + strandat 79.979 kb on + strandat 79.980 kb on - strandat 79.980 kb on - strandat 79.980 kb on - strandat 79.980 kb on - strandat 80.028 kb on + strandat 80.028 kb on + strandat 80.028 kb on + strandat 80.028 kb on + strandat 80.029 kb on - strandat 80.029 kb on - strandat 80.040 kb on + strandat 80.040 kb on + strandat 80.040 kb on + strandat 80.041 kb on - strandat 80.041 kb on - strandat 80.041 kb on - strandat 80.120 kb on + strand, within MPMX19_05937at 80.120 kb on + strand, within MPMX19_05937at 80.120 kb on + strand, within MPMX19_05937at 80.120 kb on + strand, within MPMX19_05937at 80.120 kb on + strand, within MPMX19_05937at 80.120 kb on + strand, within MPMX19_05937at 80.120 kb on + strand, within MPMX19_05937at 80.120 kb on + strand, within MPMX19_05937at 80.120 kb on + strand, within MPMX19_05937at 80.121 kb on - strand, within MPMX19_05937at 80.121 kb on - strand, within MPMX19_05937at 80.121 kb on - strand, within MPMX19_05937at 80.121 kb on - strand, within MPMX19_05937at 80.121 kb on - strand, within MPMX19_05937at 80.121 kb on - strand, within MPMX19_05937at 80.121 kb on - strand, within MPMX19_05937at 80.121 kb on - strand, within MPMX19_05937at 80.121 kb on - strand, within MPMX19_05937at 80.121 kb on - strand, within MPMX19_05937at 80.121 kb on - strand, within MPMX19_05937at 80.121 kb on - strand, within MPMX19_05937at 80.121 kb on - strand, within MPMX19_05937at 80.121 kb on - strand, within MPMX19_05937at 80.216 kb on + strand, within MPMX19_05937at 80.216 kb on + strand, within MPMX19_05937at 80.217 kb on - strand, within MPMX19_05937at 80.259 kb on + strand, within MPMX19_05937at 80.259 kb on + strand, within MPMX19_05937at 80.260 kb on - strand, within MPMX19_05937at 80.301 kb on + strand, within MPMX19_05937at 80.302 kb on - strand, within MPMX19_05937at 80.302 kb on - strand, within MPMX19_05937at 80.773 kb on + strandat 80.907 kb on + strandat 80.907 kb on + strandat 80.908 kb on - strandat 81.105 kb on + strandat 81.105 kb on + strandat 81.106 kb on - strandat 81.106 kb on - strandat 81.106 kb on - strandat 81.203 kb on + strandat 81.317 kb on + strand, within MPMX19_05938at 81.317 kb on + strand, within MPMX19_05938at 81.317 kb on + strand, within MPMX19_05938at 81.318 kb on - strand, within MPMX19_05938at 81.371 kb on + strand, within MPMX19_05938at 81.371 kb on + strand, within MPMX19_05938at 81.371 kb on + strand, within MPMX19_05938at 81.371 kb on + strand, within MPMX19_05938at 81.371 kb on + strand, within MPMX19_05938at 81.372 kb on - strand, within MPMX19_05938at 81.446 kb on + strand, within MPMX19_05938at 81.446 kb on + strand, within MPMX19_05938at 81.447 kb on - strand, within MPMX19_05938at 81.503 kb on + strand, within MPMX19_05938at 81.503 kb on + strand, within MPMX19_05938at 81.503 kb on + strand, within MPMX19_05938at 81.503 kb on + strand, within MPMX19_05938at 81.503 kb on + strand, within MPMX19_05938at 81.503 kb on + strand, within MPMX19_05938at 81.503 kb on + strand, within MPMX19_05938at 81.504 kb on - strand, within MPMX19_05938at 81.504 kb on - strand, within MPMX19_05938at 81.504 kb on - strand, within MPMX19_05938at 81.504 kb on - strand, within MPMX19_05938at 81.504 kb on - strand, within MPMX19_05938at 81.504 kb on - strand, within MPMX19_05938at 81.504 kb on - strand, within MPMX19_05938at 81.504 kb on - strand, within MPMX19_05938at 81.504 kb on - strand, within MPMX19_05938at 81.581 kb on + strand, within MPMX19_05938at 81.581 kb on + strand, within MPMX19_05938at 81.581 kb on + strand, within MPMX19_05938at 81.581 kb on + strand, within MPMX19_05938at 81.581 kb on + strand, within MPMX19_05938at 81.581 kb on + strand, within MPMX19_05938at 81.581 kb on + strand, within MPMX19_05938at 81.581 kb on + strand, within MPMX19_05938at 81.581 kb on + strand, within MPMX19_05938at 81.582 kb on - strand, within MPMX19_05938at 81.582 kb on - strand, within MPMX19_05938at 81.582 kb on - strand, within MPMX19_05938at 81.582 kb on - strand, within MPMX19_05938at 81.582 kb on - strand, within MPMX19_05938at 81.582 kb on - strand, within MPMX19_05938at 81.582 kb on - strand, within MPMX19_05938at 81.582 kb on - strand, within MPMX19_05938at 81.668 kb on + strand, within MPMX19_05938

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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79,087 + MPMX19_05936 0.39 -0.1
79,088 - MPMX19_05936 0.39 -2.2
79,088 - MPMX19_05936 0.39 +0.3
79,088 - MPMX19_05936 0.39 -0.1
79,088 - MPMX19_05936 0.39 -1.1
79,213 + MPMX19_05936 0.49 -0.9
79,213 + MPMX19_05936 0.49 +0.6
79,213 + MPMX19_05936 0.49 -1.1
79,213 + MPMX19_05936 0.49 -0.8
79,214 - MPMX19_05936 0.49 +0.6
79,214 - MPMX19_05936 0.49 -1.4
79,214 - MPMX19_05936 0.49 -1.5
79,214 - MPMX19_05936 0.49 +1.5
79,745 + MPMX19_05936 0.90 -0.6
79,934 + +0.8
79,935 - -0.5
79,935 - -0.6
79,935 - -1.2
79,979 + -0.6
79,979 + -0.2
79,979 + -1.7
79,979 + -2.2
79,979 + -2.0
79,979 + -1.2
79,979 + -0.3
79,980 - -0.1
79,980 - +0.3
79,980 - -0.2
79,980 - -1.7
80,028 + -0.1
80,028 + +0.2
80,028 + -2.0
80,028 + -0.3
80,029 - +0.4
80,029 - +0.4
80,040 + +0.3
80,040 + +0.2
80,040 + -1.9
80,041 - -2.1
80,041 - -0.8
80,041 - +1.2
80,120 + MPMX19_05937 0.12 +1.2
80,120 + MPMX19_05937 0.12 -0.1
80,120 + MPMX19_05937 0.12 +0.9
80,120 + MPMX19_05937 0.12 -0.6
80,120 + MPMX19_05937 0.12 -0.7
80,120 + MPMX19_05937 0.12 -1.2
80,120 + MPMX19_05937 0.12 -0.8
80,120 + MPMX19_05937 0.12 -0.6
80,120 + MPMX19_05937 0.12 -0.8
80,121 - MPMX19_05937 0.12 -0.8
80,121 - MPMX19_05937 0.12 -1.7
80,121 - MPMX19_05937 0.12 -1.0
80,121 - MPMX19_05937 0.12 -1.6
80,121 - MPMX19_05937 0.12 -0.8
80,121 - MPMX19_05937 0.12 -0.9
80,121 - MPMX19_05937 0.12 -0.4
80,121 - MPMX19_05937 0.12 -1.1
80,121 - MPMX19_05937 0.12 +0.0
80,121 - MPMX19_05937 0.12 +0.1
80,121 - MPMX19_05937 0.12 +0.1
80,121 - MPMX19_05937 0.12 +0.1
80,121 - MPMX19_05937 0.12 -0.4
80,121 - MPMX19_05937 0.12 -0.2
80,216 + MPMX19_05937 0.23 -1.0
80,216 + MPMX19_05937 0.23 +0.9
80,217 - MPMX19_05937 0.24 +0.4
80,259 + MPMX19_05937 0.29 +0.9
80,259 + MPMX19_05937 0.29 -0.4
80,260 - MPMX19_05937 0.29 -0.8
80,301 + MPMX19_05937 0.34 -1.8
80,302 - MPMX19_05937 0.34 +0.2
80,302 - MPMX19_05937 0.34 +0.0
80,773 + +0.4
80,907 + -0.3
80,907 + +0.8
80,908 - +0.8
81,105 + +0.0
81,105 + +0.2
81,106 - -1.1
81,106 - -1.0
81,106 - -1.4
81,203 + +1.4
81,317 + MPMX19_05938 0.15 -1.4
81,317 + MPMX19_05938 0.15 +0.5
81,317 + MPMX19_05938 0.15 -0.6
81,318 - MPMX19_05938 0.15 -1.0
81,371 + MPMX19_05938 0.19 -0.7
81,371 + MPMX19_05938 0.19 +0.2
81,371 + MPMX19_05938 0.19 +0.3
81,371 + MPMX19_05938 0.19 +0.1
81,371 + MPMX19_05938 0.19 -1.1
81,372 - MPMX19_05938 0.19 -1.0
81,446 + MPMX19_05938 0.25 -0.4
81,446 + MPMX19_05938 0.25 -1.6
81,447 - MPMX19_05938 0.25 +0.9
81,503 + MPMX19_05938 0.29 -1.4
81,503 + MPMX19_05938 0.29 +0.8
81,503 + MPMX19_05938 0.29 +0.0
81,503 + MPMX19_05938 0.29 -1.4
81,503 + MPMX19_05938 0.29 +0.4
81,503 + MPMX19_05938 0.29 +0.3
81,503 + MPMX19_05938 0.29 -1.2
81,504 - MPMX19_05938 0.29 +0.3
81,504 - MPMX19_05938 0.29 -1.1
81,504 - MPMX19_05938 0.29 -0.8
81,504 - MPMX19_05938 0.29 -1.6
81,504 - MPMX19_05938 0.29 -1.3
81,504 - MPMX19_05938 0.29 -0.5
81,504 - MPMX19_05938 0.29 +0.8
81,504 - MPMX19_05938 0.29 +0.0
81,504 - MPMX19_05938 0.29 -2.4
81,581 + MPMX19_05938 0.35 -0.9
81,581 + MPMX19_05938 0.35 -1.0
81,581 + MPMX19_05938 0.35 -1.5
81,581 + MPMX19_05938 0.35 -1.0
81,581 + MPMX19_05938 0.35 -1.2
81,581 + MPMX19_05938 0.35 +0.5
81,581 + MPMX19_05938 0.35 -1.6
81,581 + MPMX19_05938 0.35 -0.5
81,581 + MPMX19_05938 0.35 -1.4
81,582 - MPMX19_05938 0.35 -0.9
81,582 - MPMX19_05938 0.35 -0.1
81,582 - MPMX19_05938 0.35 -1.2
81,582 - MPMX19_05938 0.35 -1.4
81,582 - MPMX19_05938 0.35 +0.1
81,582 - MPMX19_05938 0.35 +1.2
81,582 - MPMX19_05938 0.35 -0.6
81,582 - MPMX19_05938 0.35 -0.5
81,668 + MPMX19_05938 0.41 -0.5

Or see this region's nucleotide sequence