Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05935 and MPMX19_05936 are separated by 7 nucleotides MPMX19_05936 and MPMX19_05937 are separated by 146 nucleotides
MPMX19_05935: MPMX19_05935 - sugar efflux transporter, at 77,429 to 78,574
_05935
MPMX19_05936: MPMX19_05936 - Alpha-galactosidase, at 78,582 to 79,880
_05936
MPMX19_05937: MPMX19_05937 - hypothetical protein, at 80,027 to 80,833
_05937
Position (kb) 78
79
80 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 77.696 kb on + strand, within MPMX19_05935 at 77.696 kb on + strand, within MPMX19_05935 at 77.697 kb on - strand, within MPMX19_05935 at 77.697 kb on - strand, within MPMX19_05935 at 77.789 kb on + strand, within MPMX19_05935 at 77.789 kb on + strand, within MPMX19_05935 at 77.790 kb on - strand, within MPMX19_05935 at 78.014 kb on + strand, within MPMX19_05935 at 78.014 kb on + strand, within MPMX19_05935 at 78.014 kb on + strand, within MPMX19_05935 at 78.014 kb on + strand, within MPMX19_05935 at 78.014 kb on + strand, within MPMX19_05935 at 78.015 kb on - strand, within MPMX19_05935 at 78.015 kb on - strand, within MPMX19_05935 at 78.191 kb on + strand, within MPMX19_05935 at 78.191 kb on + strand, within MPMX19_05935 at 78.191 kb on + strand, within MPMX19_05935 at 78.191 kb on + strand, within MPMX19_05935 at 78.191 kb on + strand, within MPMX19_05935 at 78.191 kb on + strand, within MPMX19_05935 at 78.191 kb on + strand, within MPMX19_05935 at 78.191 kb on + strand, within MPMX19_05935 at 78.192 kb on - strand, within MPMX19_05935 at 78.192 kb on - strand, within MPMX19_05935 at 78.275 kb on + strand, within MPMX19_05935 at 78.275 kb on + strand, within MPMX19_05935 at 78.276 kb on - strand, within MPMX19_05935 at 78.276 kb on - strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.467 kb on + strand at 78.467 kb on + strand at 78.467 kb on + strand at 78.467 kb on + strand at 78.468 kb on - strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.572 kb on + strand at 78.601 kb on + strand at 78.601 kb on + strand at 78.602 kb on - strand at 78.602 kb on - strand at 78.602 kb on - strand at 78.602 kb on - strand at 78.602 kb on - strand at 78.602 kb on - strand at 78.633 kb on + strand at 78.633 kb on + strand at 79.087 kb on + strand, within MPMX19_05936 at 79.088 kb on - strand, within MPMX19_05936 at 79.088 kb on - strand, within MPMX19_05936 at 79.088 kb on - strand, within MPMX19_05936 at 79.088 kb on - strand, within MPMX19_05936 at 79.213 kb on + strand, within MPMX19_05936 at 79.213 kb on + strand, within MPMX19_05936 at 79.213 kb on + strand, within MPMX19_05936 at 79.213 kb on + strand, within MPMX19_05936 at 79.214 kb on - strand, within MPMX19_05936 at 79.214 kb on - strand, within MPMX19_05936 at 79.214 kb on - strand, within MPMX19_05936 at 79.214 kb on - strand, within MPMX19_05936 at 79.745 kb on + strand, within MPMX19_05936 at 79.934 kb on + strand at 79.935 kb on - strand at 79.935 kb on - strand at 79.935 kb on - strand at 79.979 kb on + strand at 79.979 kb on + strand at 79.979 kb on + strand at 79.979 kb on + strand at 79.979 kb on + strand at 79.979 kb on + strand at 79.979 kb on + strand at 79.980 kb on - strand at 79.980 kb on - strand at 79.980 kb on - strand at 79.980 kb on - strand at 80.028 kb on + strand at 80.028 kb on + strand at 80.028 kb on + strand at 80.028 kb on + strand at 80.029 kb on - strand at 80.029 kb on - strand at 80.040 kb on + strand at 80.040 kb on + strand at 80.040 kb on + strand at 80.041 kb on - strand at 80.041 kb on - strand at 80.041 kb on - strand at 80.120 kb on + strand, within MPMX19_05937 at 80.120 kb on + strand, within MPMX19_05937 at 80.120 kb on + strand, within MPMX19_05937 at 80.120 kb on + strand, within MPMX19_05937 at 80.120 kb on + strand, within MPMX19_05937 at 80.120 kb on + strand, within MPMX19_05937 at 80.120 kb on + strand, within MPMX19_05937 at 80.120 kb on + strand, within MPMX19_05937 at 80.120 kb on + strand, within MPMX19_05937 at 80.121 kb on - strand, within MPMX19_05937 at 80.121 kb on - strand, within MPMX19_05937 at 80.121 kb on - strand, within MPMX19_05937 at 80.121 kb on - strand, within MPMX19_05937 at 80.121 kb on - strand, within MPMX19_05937 at 80.121 kb on - strand, within MPMX19_05937 at 80.121 kb on - strand, within MPMX19_05937 at 80.121 kb on - strand, within MPMX19_05937 at 80.121 kb on - strand, within MPMX19_05937 at 80.121 kb on - strand, within MPMX19_05937 at 80.121 kb on - strand, within MPMX19_05937 at 80.121 kb on - strand, within MPMX19_05937 at 80.121 kb on - strand, within MPMX19_05937 at 80.121 kb on - strand, within MPMX19_05937 at 80.216 kb on + strand, within MPMX19_05937 at 80.216 kb on + strand, within MPMX19_05937 at 80.217 kb on - strand, within MPMX19_05937 at 80.259 kb on + strand, within MPMX19_05937 at 80.259 kb on + strand, within MPMX19_05937 at 80.260 kb on - strand, within MPMX19_05937 at 80.301 kb on + strand, within MPMX19_05937 at 80.302 kb on - strand, within MPMX19_05937 at 80.302 kb on - strand, within MPMX19_05937 at 80.773 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 77,696 + MPMX19_05935 0.23 -0.3 77,696 + MPMX19_05935 0.23 +0.9 77,697 - MPMX19_05935 0.23 +0.4 77,697 - MPMX19_05935 0.23 -1.9 77,789 + MPMX19_05935 0.31 -1.5 77,789 + MPMX19_05935 0.31 -1.4 77,790 - MPMX19_05935 0.32 +0.2 78,014 + MPMX19_05935 0.51 -2.5 78,014 + MPMX19_05935 0.51 +1.0 78,014 + MPMX19_05935 0.51 -1.0 78,014 + MPMX19_05935 0.51 -0.9 78,014 + MPMX19_05935 0.51 -0.5 78,015 - MPMX19_05935 0.51 -0.4 78,015 - MPMX19_05935 0.51 +1.7 78,191 + MPMX19_05935 0.66 -1.5 78,191 + MPMX19_05935 0.66 +0.1 78,191 + MPMX19_05935 0.66 -0.9 78,191 + MPMX19_05935 0.66 -1.4 78,191 + MPMX19_05935 0.66 -0.8 78,191 + MPMX19_05935 0.66 +1.2 78,191 + MPMX19_05935 0.66 -2.9 78,191 + MPMX19_05935 0.66 -2.1 78,192 - MPMX19_05935 0.67 +0.5 78,192 - MPMX19_05935 0.67 -0.8 78,275 + MPMX19_05935 0.74 -0.5 78,275 + MPMX19_05935 0.74 -1.6 78,276 - MPMX19_05935 0.74 -0.4 78,276 - MPMX19_05935 0.74 +0.2 78,347 + MPMX19_05935 0.80 +0.4 78,347 + MPMX19_05935 0.80 +0.3 78,347 + MPMX19_05935 0.80 +0.4 78,347 + MPMX19_05935 0.80 -0.6 78,347 + MPMX19_05935 0.80 -2.2 78,347 + MPMX19_05935 0.80 +0.0 78,347 + MPMX19_05935 0.80 -0.4 78,347 + MPMX19_05935 0.80 +0.1 78,347 + MPMX19_05935 0.80 -0.2 78,347 + MPMX19_05935 0.80 -0.8 78,347 + MPMX19_05935 0.80 -0.0 78,347 + MPMX19_05935 0.80 -1.1 78,347 + MPMX19_05935 0.80 -0.6 78,347 + MPMX19_05935 0.80 +0.1 78,347 + MPMX19_05935 0.80 +0.0 78,347 + MPMX19_05935 0.80 -0.0 78,347 + MPMX19_05935 0.80 -1.1 78,348 - MPMX19_05935 0.80 -1.9 78,348 - MPMX19_05935 0.80 -0.2 78,348 - MPMX19_05935 0.80 -0.7 78,348 - MPMX19_05935 0.80 -0.4 78,348 - MPMX19_05935 0.80 +0.6 78,348 - MPMX19_05935 0.80 -3.0 78,348 - MPMX19_05935 0.80 -0.8 78,348 - MPMX19_05935 0.80 +0.9 78,348 - MPMX19_05935 0.80 -0.1 78,348 - MPMX19_05935 0.80 -1.7 78,348 - MPMX19_05935 0.80 -0.7 78,348 - MPMX19_05935 0.80 -1.4 78,348 - MPMX19_05935 0.80 +0.2 78,348 - MPMX19_05935 0.80 +0.7 78,348 - MPMX19_05935 0.80 -1.1 78,348 - MPMX19_05935 0.80 +1.0 78,348 - MPMX19_05935 0.80 +1.6 78,348 - MPMX19_05935 0.80 -0.1 78,348 - MPMX19_05935 0.80 -0.6 78,348 - MPMX19_05935 0.80 -1.1 78,348 - MPMX19_05935 0.80 +0.3 78,348 - MPMX19_05935 0.80 -0.8 78,348 - MPMX19_05935 0.80 -0.0 78,348 - MPMX19_05935 0.80 -0.7 78,467 + +0.6 78,467 + -1.1 78,467 + +0.8 78,467 + -1.4 78,468 - -1.1 78,473 + -0.2 78,473 + +0.4 78,473 + +1.5 78,473 + -0.7 78,473 + -0.8 78,473 + +0.3 78,473 + -1.9 78,473 + +0.3 78,473 + -1.3 78,473 + +0.0 78,473 + -1.8 78,473 + -1.9 78,473 + -0.6 78,473 + +1.6 78,473 + +0.2 78,473 + -0.6 78,473 + +0.0 78,473 + -0.1 78,474 - +0.4 78,474 - -1.6 78,474 - -0.8 78,474 - +0.7 78,474 - -1.5 78,474 - -0.8 78,474 - +0.1 78,474 - +0.3 78,474 - -0.2 78,474 - -0.3 78,474 - -2.2 78,474 - +0.0 78,474 - +0.5 78,474 - +0.0 78,475 + +0.5 78,475 + +0.9 78,475 + +0.9 78,475 + -0.5 78,475 + +0.4 78,475 + +1.2 78,475 + +2.2 78,475 + -0.9 78,475 + +0.0 78,475 + -1.5 78,475 + -1.0 78,475 + +0.1 78,475 + -1.1 78,475 + -1.4 78,475 + -0.3 78,476 - -0.0 78,476 - -2.2 78,476 - -0.4 78,476 - +0.5 78,476 - +0.1 78,476 - -1.2 78,476 - +0.0 78,476 - +0.8 78,476 - -1.0 78,476 - -1.0 78,476 - +0.5 78,476 - -0.1 78,476 - -0.8 78,476 - -1.0 78,476 - -0.6 78,476 - +0.9 78,476 - -0.3 78,476 - +0.0 78,476 - +0.6 78,476 - -0.1 78,476 - -0.8 78,476 - +0.2 78,476 - -1.1 78,476 - -1.5 78,476 - +0.5 78,476 - -0.1 78,476 - -0.4 78,476 - -0.8 78,572 + -1.1 78,601 + -1.6 78,601 + -1.1 78,602 - -0.2 78,602 - -0.6 78,602 - -1.0 78,602 - -2.7 78,602 - -0.2 78,602 - -0.0 78,633 + -0.2 78,633 + -1.1 79,087 + MPMX19_05936 0.39 -0.1 79,088 - MPMX19_05936 0.39 -2.2 79,088 - MPMX19_05936 0.39 +0.3 79,088 - MPMX19_05936 0.39 -0.1 79,088 - MPMX19_05936 0.39 -1.1 79,213 + MPMX19_05936 0.49 -0.9 79,213 + MPMX19_05936 0.49 +0.6 79,213 + MPMX19_05936 0.49 -1.1 79,213 + MPMX19_05936 0.49 -0.8 79,214 - MPMX19_05936 0.49 +0.6 79,214 - MPMX19_05936 0.49 -1.4 79,214 - MPMX19_05936 0.49 -1.5 79,214 - MPMX19_05936 0.49 +1.5 79,745 + MPMX19_05936 0.90 -0.6 79,934 + +0.8 79,935 - -0.5 79,935 - -0.6 79,935 - -1.2 79,979 + -0.6 79,979 + -0.2 79,979 + -1.7 79,979 + -2.2 79,979 + -2.0 79,979 + -1.2 79,979 + -0.3 79,980 - -0.1 79,980 - +0.3 79,980 - -0.2 79,980 - -1.7 80,028 + -0.1 80,028 + +0.2 80,028 + -2.0 80,028 + -0.3 80,029 - +0.4 80,029 - +0.4 80,040 + +0.3 80,040 + +0.2 80,040 + -1.9 80,041 - -2.1 80,041 - -0.8 80,041 - +1.2 80,120 + MPMX19_05937 0.12 +1.2 80,120 + MPMX19_05937 0.12 -0.1 80,120 + MPMX19_05937 0.12 +0.9 80,120 + MPMX19_05937 0.12 -0.6 80,120 + MPMX19_05937 0.12 -0.7 80,120 + MPMX19_05937 0.12 -1.2 80,120 + MPMX19_05937 0.12 -0.8 80,120 + MPMX19_05937 0.12 -0.6 80,120 + MPMX19_05937 0.12 -0.8 80,121 - MPMX19_05937 0.12 -0.8 80,121 - MPMX19_05937 0.12 -1.7 80,121 - MPMX19_05937 0.12 -1.0 80,121 - MPMX19_05937 0.12 -1.6 80,121 - MPMX19_05937 0.12 -0.8 80,121 - MPMX19_05937 0.12 -0.9 80,121 - MPMX19_05937 0.12 -0.4 80,121 - MPMX19_05937 0.12 -1.1 80,121 - MPMX19_05937 0.12 +0.0 80,121 - MPMX19_05937 0.12 +0.1 80,121 - MPMX19_05937 0.12 +0.1 80,121 - MPMX19_05937 0.12 +0.1 80,121 - MPMX19_05937 0.12 -0.4 80,121 - MPMX19_05937 0.12 -0.2 80,216 + MPMX19_05937 0.23 -1.0 80,216 + MPMX19_05937 0.23 +0.9 80,217 - MPMX19_05937 0.24 +0.4 80,259 + MPMX19_05937 0.29 +0.9 80,259 + MPMX19_05937 0.29 -0.4 80,260 - MPMX19_05937 0.29 -0.8 80,301 + MPMX19_05937 0.34 -1.8 80,302 - MPMX19_05937 0.34 +0.2 80,302 - MPMX19_05937 0.34 +0.0 80,773 + +0.4
Or see this region's nucleotide sequence