Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05911 and MPMX19_05912 overlap by 4 nucleotides MPMX19_05912 and MPMX19_05913 overlap by 20 nucleotides MPMX19_05913 and MPMX19_05914 are separated by 19 nucleotides MPMX19_05914 and MPMX19_05915 are separated by 188 nucleotides
MPMX19_05911: MPMX19_05911 - hypothetical protein, at 47,137 to 47,874
_05911
MPMX19_05912: MPMX19_05912 - hypothetical protein, at 47,871 to 48,512
_05912
MPMX19_05913: MPMX19_05913 - hypothetical protein, at 48,493 to 49,665
_05913
MPMX19_05914: MPMX19_05914 - hypothetical protein, at 49,685 to 50,233
_05914
MPMX19_05915: MPMX19_05915 - Flagellar M-ring protein, at 50,422 to 52,140
_05915
Position (kb)
48
49
50 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 47.911 kb on + strand at 47.911 kb on + strand at 47.911 kb on + strand at 47.911 kb on + strand at 47.911 kb on + strand at 47.911 kb on + strand at 47.911 kb on + strand at 47.911 kb on + strand at 47.911 kb on + strand at 47.911 kb on + strand at 47.911 kb on + strand at 47.911 kb on + strand at 47.911 kb on + strand at 47.911 kb on + strand at 47.911 kb on + strand at 47.911 kb on + strand at 47.911 kb on + strand at 47.912 kb on - strand at 47.912 kb on - strand at 47.912 kb on - strand at 47.912 kb on - strand at 47.912 kb on - strand at 47.912 kb on - strand at 47.912 kb on - strand at 47.912 kb on - strand at 47.912 kb on - strand at 47.912 kb on - strand at 47.912 kb on - strand at 47.912 kb on - strand at 47.912 kb on - strand at 47.912 kb on - strand at 48.454 kb on + strand at 48.454 kb on + strand at 48.455 kb on - strand at 48.455 kb on - strand at 48.842 kb on + strand, within MPMX19_05913 at 48.842 kb on + strand, within MPMX19_05913 at 49.064 kb on + strand, within MPMX19_05913 at 49.064 kb on + strand, within MPMX19_05913 at 49.064 kb on + strand, within MPMX19_05913 at 49.064 kb on + strand, within MPMX19_05913 at 49.064 kb on + strand, within MPMX19_05913 at 49.064 kb on + strand, within MPMX19_05913 at 49.064 kb on + strand, within MPMX19_05913 at 49.064 kb on + strand, within MPMX19_05913 at 49.064 kb on + strand, within MPMX19_05913 at 49.065 kb on - strand, within MPMX19_05913 at 49.065 kb on - strand, within MPMX19_05913 at 49.065 kb on - strand, within MPMX19_05913 at 49.065 kb on - strand, within MPMX19_05913 at 49.065 kb on - strand, within MPMX19_05913 at 49.065 kb on - strand, within MPMX19_05913 at 49.065 kb on - strand, within MPMX19_05913 at 49.130 kb on + strand, within MPMX19_05913 at 49.130 kb on + strand, within MPMX19_05913 at 49.130 kb on + strand, within MPMX19_05913 at 49.130 kb on + strand, within MPMX19_05913 at 49.130 kb on + strand, within MPMX19_05913 at 49.130 kb on + strand, within MPMX19_05913 at 49.131 kb on - strand, within MPMX19_05913 at 49.131 kb on - strand, within MPMX19_05913 at 49.131 kb on - strand, within MPMX19_05913 at 49.131 kb on - strand, within MPMX19_05913 at 49.131 kb on - strand, within MPMX19_05913 at 49.235 kb on + strand, within MPMX19_05913 at 49.235 kb on + strand, within MPMX19_05913 at 49.235 kb on + strand, within MPMX19_05913 at 49.235 kb on + strand, within MPMX19_05913 at 49.235 kb on + strand, within MPMX19_05913 at 49.236 kb on - strand, within MPMX19_05913 at 49.236 kb on - strand, within MPMX19_05913 at 49.236 kb on - strand, within MPMX19_05913 at 49.344 kb on + strand, within MPMX19_05913 at 49.344 kb on + strand, within MPMX19_05913 at 49.345 kb on - strand, within MPMX19_05913 at 49.345 kb on - strand, within MPMX19_05913 at 49.345 kb on - strand, within MPMX19_05913 at 49.345 kb on - strand, within MPMX19_05913 at 49.345 kb on - strand, within MPMX19_05913 at 49.345 kb on - strand, within MPMX19_05913 at 49.345 kb on - strand, within MPMX19_05913 at 49.345 kb on - strand, within MPMX19_05913 at 49.686 kb on + strand at 49.686 kb on + strand at 49.686 kb on + strand at 49.686 kb on + strand at 49.687 kb on - strand at 49.687 kb on - strand at 49.687 kb on - strand at 49.687 kb on - strand at 50.227 kb on + strand at 50.227 kb on + strand at 50.227 kb on + strand at 50.228 kb on - strand at 50.336 kb on + strand at 50.336 kb on + strand at 50.380 kb on + strand at 50.380 kb on + strand at 50.381 kb on - strand at 50.557 kb on + strand at 50.557 kb on + strand at 50.558 kb on - strand at 50.558 kb on - strand at 50.558 kb on - strand at 50.558 kb on - strand at 50.558 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 47,911 + -0.8 47,911 + -2.6 47,911 + +0.2 47,911 + -1.0 47,911 + +0.4 47,911 + -0.5 47,911 + -0.3 47,911 + +1.6 47,911 + -0.5 47,911 + -0.3 47,911 + -1.2 47,911 + +0.0 47,911 + +0.2 47,911 + +0.4 47,911 + +0.0 47,911 + +0.2 47,911 + -0.6 47,912 - -0.0 47,912 - -1.2 47,912 - -0.2 47,912 - +0.2 47,912 - +0.6 47,912 - -1.2 47,912 - +0.8 47,912 - -0.4 47,912 - +0.8 47,912 - +1.6 47,912 - -0.4 47,912 - -1.2 47,912 - +0.6 47,912 - +0.2 48,454 + -1.6 48,454 + -1.3 48,455 - -0.6 48,455 - -1.4 48,842 + MPMX19_05913 0.30 +0.7 48,842 + MPMX19_05913 0.30 -0.5 49,064 + MPMX19_05913 0.49 -1.5 49,064 + MPMX19_05913 0.49 -0.3 49,064 + MPMX19_05913 0.49 +0.6 49,064 + MPMX19_05913 0.49 +1.4 49,064 + MPMX19_05913 0.49 -0.8 49,064 + MPMX19_05913 0.49 -2.0 49,064 + MPMX19_05913 0.49 -2.4 49,064 + MPMX19_05913 0.49 -1.6 49,064 + MPMX19_05913 0.49 -1.0 49,065 - MPMX19_05913 0.49 -1.1 49,065 - MPMX19_05913 0.49 +0.2 49,065 - MPMX19_05913 0.49 +0.1 49,065 - MPMX19_05913 0.49 -2.3 49,065 - MPMX19_05913 0.49 -1.3 49,065 - MPMX19_05913 0.49 -1.0 49,065 - MPMX19_05913 0.49 +0.5 49,130 + MPMX19_05913 0.54 -0.5 49,130 + MPMX19_05913 0.54 +0.0 49,130 + MPMX19_05913 0.54 -0.6 49,130 + MPMX19_05913 0.54 +0.2 49,130 + MPMX19_05913 0.54 -0.9 49,130 + MPMX19_05913 0.54 -0.6 49,131 - MPMX19_05913 0.54 +1.0 49,131 - MPMX19_05913 0.54 -2.2 49,131 - MPMX19_05913 0.54 +1.6 49,131 - MPMX19_05913 0.54 -0.2 49,131 - MPMX19_05913 0.54 +0.0 49,235 + MPMX19_05913 0.63 -0.6 49,235 + MPMX19_05913 0.63 +0.6 49,235 + MPMX19_05913 0.63 -0.1 49,235 + MPMX19_05913 0.63 -1.0 49,235 + MPMX19_05913 0.63 -0.1 49,236 - MPMX19_05913 0.63 +0.6 49,236 - MPMX19_05913 0.63 +0.8 49,236 - MPMX19_05913 0.63 -1.3 49,344 + MPMX19_05913 0.73 -0.8 49,344 + MPMX19_05913 0.73 +0.0 49,345 - MPMX19_05913 0.73 -0.0 49,345 - MPMX19_05913 0.73 -0.7 49,345 - MPMX19_05913 0.73 -0.1 49,345 - MPMX19_05913 0.73 +0.8 49,345 - MPMX19_05913 0.73 -0.5 49,345 - MPMX19_05913 0.73 +1.9 49,345 - MPMX19_05913 0.73 +0.3 49,345 - MPMX19_05913 0.73 +0.6 49,686 + -1.2 49,686 + +0.5 49,686 + -0.2 49,686 + +0.8 49,687 - +0.5 49,687 - +0.0 49,687 - -0.7 49,687 - -1.7 50,227 + -0.8 50,227 + +0.3 50,227 + +0.6 50,228 - -0.5 50,336 + +0.8 50,336 + +0.4 50,380 + +0.4 50,380 + -0.2 50,381 - -2.2 50,557 + +0.3 50,557 + -1.0 50,558 - -0.5 50,558 - -0.4 50,558 - +1.5 50,558 - -0.2 50,558 - -0.1
Or see this region's nucleotide sequence