Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05907

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05905 and MPMX19_05906 overlap by 4 nucleotidesMPMX19_05906 and MPMX19_05907 are separated by 26 nucleotidesMPMX19_05907 and MPMX19_05908 are separated by 46 nucleotidesMPMX19_05908 and MPMX19_05909 are separated by 36 nucleotides MPMX19_05905: MPMX19_05905 - Flagellar basal-body rod protein FlgG, at 42,256 to 43,041 _05905 MPMX19_05906: MPMX19_05906 - hypothetical protein, at 43,038 to 43,748 _05906 MPMX19_05907: MPMX19_05907 - Flagellar L-ring protein, at 43,775 to 44,506 _05907 MPMX19_05908: MPMX19_05908 - hypothetical protein, at 44,553 to 45,020 _05908 MPMX19_05909: MPMX19_05909 - hypothetical protein, at 45,057 to 45,719 _05909 Position (kb) 43 44 45Strain fitness (log2 ratio) -2 -1 0 1 2at 42.907 kb on + strand, within MPMX19_05905at 42.907 kb on + strand, within MPMX19_05905at 42.907 kb on + strand, within MPMX19_05905at 42.907 kb on + strand, within MPMX19_05905at 42.907 kb on + strand, within MPMX19_05905at 42.908 kb on - strand, within MPMX19_05905at 42.974 kb on - strandat 42.974 kb on - strandat 42.974 kb on - strandat 42.974 kb on - strandat 42.974 kb on - strandat 42.974 kb on - strandat 43.572 kb on + strand, within MPMX19_05906at 43.572 kb on + strand, within MPMX19_05906at 43.573 kb on - strand, within MPMX19_05906at 43.573 kb on - strand, within MPMX19_05906at 43.573 kb on - strand, within MPMX19_05906at 43.751 kb on + strandat 43.751 kb on + strandat 43.751 kb on + strandat 43.751 kb on + strandat 43.752 kb on - strandat 44.324 kb on + strand, within MPMX19_05907at 44.324 kb on + strand, within MPMX19_05907at 44.324 kb on + strand, within MPMX19_05907at 44.324 kb on + strand, within MPMX19_05907at 44.324 kb on + strand, within MPMX19_05907at 44.324 kb on + strand, within MPMX19_05907at 44.324 kb on + strand, within MPMX19_05907at 44.325 kb on - strand, within MPMX19_05907at 44.325 kb on - strand, within MPMX19_05907at 44.325 kb on - strand, within MPMX19_05907at 44.325 kb on - strand, within MPMX19_05907at 44.325 kb on - strand, within MPMX19_05907at 44.325 kb on - strand, within MPMX19_05907at 44.396 kb on + strand, within MPMX19_05907at 44.396 kb on + strand, within MPMX19_05907at 44.396 kb on + strand, within MPMX19_05907at 44.397 kb on - strand, within MPMX19_05907at 44.397 kb on - strand, within MPMX19_05907at 44.397 kb on - strand, within MPMX19_05907at 44.426 kb on + strand, within MPMX19_05907at 44.426 kb on + strand, within MPMX19_05907at 44.426 kb on + strand, within MPMX19_05907at 44.426 kb on + strand, within MPMX19_05907at 44.426 kb on + strand, within MPMX19_05907at 44.426 kb on + strand, within MPMX19_05907at 44.426 kb on + strand, within MPMX19_05907at 44.426 kb on + strand, within MPMX19_05907at 44.426 kb on + strand, within MPMX19_05907at 44.426 kb on + strand, within MPMX19_05907at 44.426 kb on + strand, within MPMX19_05907at 44.427 kb on - strand, within MPMX19_05907at 44.427 kb on - strand, within MPMX19_05907at 44.427 kb on - strand, within MPMX19_05907at 44.427 kb on - strand, within MPMX19_05907at 44.427 kb on - strand, within MPMX19_05907at 44.427 kb on - strand, within MPMX19_05907at 44.427 kb on - strand, within MPMX19_05907at 44.427 kb on - strand, within MPMX19_05907at 44.427 kb on - strand, within MPMX19_05907at 44.427 kb on - strand, within MPMX19_05907at 44.427 kb on - strand, within MPMX19_05907at 44.688 kb on + strand, within MPMX19_05908at 44.688 kb on + strand, within MPMX19_05908at 44.688 kb on + strand, within MPMX19_05908at 44.688 kb on + strand, within MPMX19_05908at 44.688 kb on + strand, within MPMX19_05908at 44.689 kb on - strand, within MPMX19_05908at 44.691 kb on + strand, within MPMX19_05908at 44.691 kb on + strand, within MPMX19_05908at 44.691 kb on + strand, within MPMX19_05908at 44.691 kb on + strand, within MPMX19_05908at 44.691 kb on + strand, within MPMX19_05908at 44.691 kb on + strand, within MPMX19_05908at 44.691 kb on + strand, within MPMX19_05908at 44.691 kb on + strand, within MPMX19_05908at 44.691 kb on + strand, within MPMX19_05908at 44.691 kb on + strand, within MPMX19_05908at 44.692 kb on - strand, within MPMX19_05908at 44.692 kb on - strand, within MPMX19_05908at 44.692 kb on - strand, within MPMX19_05908at 44.692 kb on - strand, within MPMX19_05908at 44.692 kb on - strand, within MPMX19_05908at 45.218 kb on + strand, within MPMX19_05909at 45.218 kb on + strand, within MPMX19_05909at 45.218 kb on + strand, within MPMX19_05909at 45.218 kb on + strand, within MPMX19_05909at 45.218 kb on + strand, within MPMX19_05909at 45.218 kb on + strand, within MPMX19_05909at 45.218 kb on + strand, within MPMX19_05909at 45.218 kb on + strand, within MPMX19_05909at 45.218 kb on + strand, within MPMX19_05909at 45.218 kb on + strand, within MPMX19_05909at 45.218 kb on + strand, within MPMX19_05909at 45.218 kb on + strand, within MPMX19_05909at 45.218 kb on + strand, within MPMX19_05909at 45.218 kb on + strand, within MPMX19_05909at 45.218 kb on + strand, within MPMX19_05909at 45.219 kb on - strand, within MPMX19_05909at 45.219 kb on - strand, within MPMX19_05909at 45.219 kb on - strand, within MPMX19_05909at 45.219 kb on - strand, within MPMX19_05909at 45.219 kb on - strand, within MPMX19_05909at 45.220 kb on + strand, within MPMX19_05909at 45.220 kb on + strand, within MPMX19_05909at 45.220 kb on + strand, within MPMX19_05909at 45.220 kb on + strand, within MPMX19_05909at 45.220 kb on + strand, within MPMX19_05909at 45.220 kb on + strand, within MPMX19_05909at 45.221 kb on - strand, within MPMX19_05909at 45.221 kb on - strand, within MPMX19_05909at 45.221 kb on - strand, within MPMX19_05909at 45.221 kb on - strand, within MPMX19_05909at 45.221 kb on - strand, within MPMX19_05909at 45.221 kb on - strand, within MPMX19_05909at 45.221 kb on - strand, within MPMX19_05909at 45.221 kb on - strand, within MPMX19_05909at 45.221 kb on - strand, within MPMX19_05909at 45.221 kb on - strand, within MPMX19_05909at 45.221 kb on - strand, within MPMX19_05909at 45.221 kb on - strand, within MPMX19_05909at 45.310 kb on + strand, within MPMX19_05909at 45.310 kb on + strand, within MPMX19_05909at 45.310 kb on + strand, within MPMX19_05909at 45.311 kb on - strand, within MPMX19_05909at 45.311 kb on - strand, within MPMX19_05909at 45.311 kb on - strand, within MPMX19_05909at 45.311 kb on - strand, within MPMX19_05909at 45.376 kb on + strand, within MPMX19_05909at 45.376 kb on + strand, within MPMX19_05909at 45.376 kb on + strand, within MPMX19_05909at 45.376 kb on + strand, within MPMX19_05909at 45.376 kb on + strand, within MPMX19_05909at 45.377 kb on - strand, within MPMX19_05909at 45.377 kb on - strand, within MPMX19_05909at 45.377 kb on - strand, within MPMX19_05909

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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42,907 + MPMX19_05905 0.83 -0.1
42,907 + MPMX19_05905 0.83 -0.5
42,907 + MPMX19_05905 0.83 -1.2
42,907 + MPMX19_05905 0.83 -1.0
42,907 + MPMX19_05905 0.83 -1.0
42,908 - MPMX19_05905 0.83 -1.4
42,974 - -0.9
42,974 - +0.1
42,974 - +0.2
42,974 - -0.6
42,974 - +1.0
42,974 - -0.1
43,572 + MPMX19_05906 0.75 -0.4
43,572 + MPMX19_05906 0.75 -1.2
43,573 - MPMX19_05906 0.75 -1.2
43,573 - MPMX19_05906 0.75 +1.9
43,573 - MPMX19_05906 0.75 -0.2
43,751 + -1.8
43,751 + -1.2
43,751 + -0.7
43,751 + +1.8
43,752 - -0.4
44,324 + MPMX19_05907 0.75 -0.1
44,324 + MPMX19_05907 0.75 -1.4
44,324 + MPMX19_05907 0.75 -1.6
44,324 + MPMX19_05907 0.75 +0.6
44,324 + MPMX19_05907 0.75 +0.2
44,324 + MPMX19_05907 0.75 +0.3
44,324 + MPMX19_05907 0.75 +0.1
44,325 - MPMX19_05907 0.75 -0.2
44,325 - MPMX19_05907 0.75 -0.2
44,325 - MPMX19_05907 0.75 -0.6
44,325 - MPMX19_05907 0.75 +0.6
44,325 - MPMX19_05907 0.75 +0.1
44,325 - MPMX19_05907 0.75 +0.1
44,396 + MPMX19_05907 0.85 -0.2
44,396 + MPMX19_05907 0.85 +0.0
44,396 + MPMX19_05907 0.85 -1.2
44,397 - MPMX19_05907 0.85 -1.1
44,397 - MPMX19_05907 0.85 +1.1
44,397 - MPMX19_05907 0.85 -1.5
44,426 + MPMX19_05907 0.89 -0.1
44,426 + MPMX19_05907 0.89 +0.5
44,426 + MPMX19_05907 0.89 +0.3
44,426 + MPMX19_05907 0.89 -0.5
44,426 + MPMX19_05907 0.89 -0.6
44,426 + MPMX19_05907 0.89 -0.8
44,426 + MPMX19_05907 0.89 +0.3
44,426 + MPMX19_05907 0.89 +0.5
44,426 + MPMX19_05907 0.89 -0.4
44,426 + MPMX19_05907 0.89 +1.4
44,426 + MPMX19_05907 0.89 -2.1
44,427 - MPMX19_05907 0.89 +0.0
44,427 - MPMX19_05907 0.89 -1.0
44,427 - MPMX19_05907 0.89 -0.1
44,427 - MPMX19_05907 0.89 -0.4
44,427 - MPMX19_05907 0.89 +0.2
44,427 - MPMX19_05907 0.89 +0.1
44,427 - MPMX19_05907 0.89 -0.5
44,427 - MPMX19_05907 0.89 -1.0
44,427 - MPMX19_05907 0.89 -0.1
44,427 - MPMX19_05907 0.89 -1.9
44,427 - MPMX19_05907 0.89 +2.0
44,688 + MPMX19_05908 0.29 +0.8
44,688 + MPMX19_05908 0.29 -2.0
44,688 + MPMX19_05908 0.29 -1.1
44,688 + MPMX19_05908 0.29 +0.2
44,688 + MPMX19_05908 0.29 +0.4
44,689 - MPMX19_05908 0.29 -0.1
44,691 + MPMX19_05908 0.29 -0.6
44,691 + MPMX19_05908 0.29 -0.6
44,691 + MPMX19_05908 0.29 -0.2
44,691 + MPMX19_05908 0.29 -0.2
44,691 + MPMX19_05908 0.29 -0.3
44,691 + MPMX19_05908 0.29 -0.1
44,691 + MPMX19_05908 0.29 -1.5
44,691 + MPMX19_05908 0.29 -1.0
44,691 + MPMX19_05908 0.29 +0.1
44,691 + MPMX19_05908 0.29 -2.2
44,692 - MPMX19_05908 0.30 -1.4
44,692 - MPMX19_05908 0.30 +0.2
44,692 - MPMX19_05908 0.30 +0.6
44,692 - MPMX19_05908 0.30 +0.9
44,692 - MPMX19_05908 0.30 -1.5
45,218 + MPMX19_05909 0.24 -0.4
45,218 + MPMX19_05909 0.24 +1.5
45,218 + MPMX19_05909 0.24 -0.2
45,218 + MPMX19_05909 0.24 -0.6
45,218 + MPMX19_05909 0.24 +0.2
45,218 + MPMX19_05909 0.24 -0.5
45,218 + MPMX19_05909 0.24 -0.4
45,218 + MPMX19_05909 0.24 -1.0
45,218 + MPMX19_05909 0.24 +0.0
45,218 + MPMX19_05909 0.24 +0.2
45,218 + MPMX19_05909 0.24 +0.8
45,218 + MPMX19_05909 0.24 +0.2
45,218 + MPMX19_05909 0.24 +0.1
45,218 + MPMX19_05909 0.24 -1.2
45,218 + MPMX19_05909 0.24 -0.9
45,219 - MPMX19_05909 0.24 -0.8
45,219 - MPMX19_05909 0.24 -1.4
45,219 - MPMX19_05909 0.24 -0.4
45,219 - MPMX19_05909 0.24 +0.5
45,219 - MPMX19_05909 0.24 -0.2
45,220 + MPMX19_05909 0.25 -1.6
45,220 + MPMX19_05909 0.25 -1.6
45,220 + MPMX19_05909 0.25 +0.6
45,220 + MPMX19_05909 0.25 +0.8
45,220 + MPMX19_05909 0.25 -1.8
45,220 + MPMX19_05909 0.25 +0.9
45,221 - MPMX19_05909 0.25 +0.4
45,221 - MPMX19_05909 0.25 -0.0
45,221 - MPMX19_05909 0.25 +0.2
45,221 - MPMX19_05909 0.25 -1.2
45,221 - MPMX19_05909 0.25 -0.8
45,221 - MPMX19_05909 0.25 +0.4
45,221 - MPMX19_05909 0.25 +0.6
45,221 - MPMX19_05909 0.25 -0.8
45,221 - MPMX19_05909 0.25 -1.6
45,221 - MPMX19_05909 0.25 -0.1
45,221 - MPMX19_05909 0.25 +0.2
45,221 - MPMX19_05909 0.25 +1.6
45,310 + MPMX19_05909 0.38 -1.0
45,310 + MPMX19_05909 0.38 -1.2
45,310 + MPMX19_05909 0.38 -1.3
45,311 - MPMX19_05909 0.38 -0.6
45,311 - MPMX19_05909 0.38 -0.8
45,311 - MPMX19_05909 0.38 -0.5
45,311 - MPMX19_05909 0.38 -1.1
45,376 + MPMX19_05909 0.48 +0.6
45,376 + MPMX19_05909 0.48 -0.5
45,376 + MPMX19_05909 0.48 -1.6
45,376 + MPMX19_05909 0.48 -0.5
45,376 + MPMX19_05909 0.48 +0.5
45,377 - MPMX19_05909 0.48 -0.3
45,377 - MPMX19_05909 0.48 -0.3
45,377 - MPMX19_05909 0.48 -1.1

Or see this region's nucleotide sequence