Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05894

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05893 and MPMX19_05894 are separated by 222 nucleotidesMPMX19_05894 and MPMX19_05895 are separated by 23 nucleotidesMPMX19_05895 and MPMX19_05896 overlap by 4 nucleotidesMPMX19_05896 and MPMX19_05897 are separated by 44 nucleotides MPMX19_05893: MPMX19_05893 - hypothetical protein, at 28,795 to 30,012 _05893 MPMX19_05894: MPMX19_05894 - hypothetical protein, at 30,235 to 30,777 _05894 MPMX19_05895: MPMX19_05895 - hypothetical protein, at 30,801 to 31,319 _05895 MPMX19_05896: MPMX19_05896 - hypothetical protein, at 31,316 to 31,642 _05896 MPMX19_05897: MPMX19_05897 - Flagellar P-ring protein, at 31,687 to 32,850 _05897 Position (kb) 30 31Strain fitness (log2 ratio) -3 -2 -1 0 1at 29.300 kb on + strand, within MPMX19_05893at 29.300 kb on + strand, within MPMX19_05893at 29.300 kb on + strand, within MPMX19_05893at 29.300 kb on + strand, within MPMX19_05893at 29.300 kb on + strand, within MPMX19_05893at 29.300 kb on + strand, within MPMX19_05893at 29.300 kb on + strand, within MPMX19_05893at 29.300 kb on + strand, within MPMX19_05893at 29.301 kb on - strand, within MPMX19_05893at 29.301 kb on - strand, within MPMX19_05893at 29.301 kb on - strand, within MPMX19_05893at 29.324 kb on + strand, within MPMX19_05893at 29.325 kb on - strand, within MPMX19_05893at 29.348 kb on + strand, within MPMX19_05893at 29.348 kb on + strand, within MPMX19_05893at 29.420 kb on + strand, within MPMX19_05893at 29.420 kb on + strand, within MPMX19_05893at 29.420 kb on + strand, within MPMX19_05893at 29.420 kb on + strand, within MPMX19_05893at 29.421 kb on - strand, within MPMX19_05893at 29.421 kb on - strand, within MPMX19_05893at 29.459 kb on + strand, within MPMX19_05893at 29.459 kb on + strand, within MPMX19_05893at 29.459 kb on + strand, within MPMX19_05893at 29.459 kb on + strand, within MPMX19_05893at 29.459 kb on + strand, within MPMX19_05893at 29.459 kb on + strand, within MPMX19_05893at 29.459 kb on + strand, within MPMX19_05893at 29.459 kb on + strand, within MPMX19_05893at 29.459 kb on + strand, within MPMX19_05893at 29.460 kb on - strand, within MPMX19_05893at 29.460 kb on - strand, within MPMX19_05893at 29.460 kb on - strand, within MPMX19_05893at 29.460 kb on - strand, within MPMX19_05893at 29.493 kb on + strand, within MPMX19_05893at 29.493 kb on + strand, within MPMX19_05893at 29.493 kb on + strand, within MPMX19_05893at 29.493 kb on + strand, within MPMX19_05893at 29.493 kb on + strand, within MPMX19_05893at 29.493 kb on + strand, within MPMX19_05893at 29.493 kb on + strand, within MPMX19_05893at 29.493 kb on + strand, within MPMX19_05893at 29.493 kb on + strand, within MPMX19_05893at 29.493 kb on + strand, within MPMX19_05893at 29.493 kb on + strand, within MPMX19_05893at 29.493 kb on + strand, within MPMX19_05893at 29.493 kb on + strand, within MPMX19_05893at 29.494 kb on - strand, within MPMX19_05893at 29.494 kb on - strand, within MPMX19_05893at 29.494 kb on - strand, within MPMX19_05893at 29.494 kb on - strand, within MPMX19_05893at 29.494 kb on - strand, within MPMX19_05893at 29.494 kb on - strand, within MPMX19_05893at 29.494 kb on - strand, within MPMX19_05893at 29.494 kb on - strand, within MPMX19_05893at 29.495 kb on + strand, within MPMX19_05893at 29.495 kb on + strand, within MPMX19_05893at 29.495 kb on + strand, within MPMX19_05893at 29.495 kb on + strand, within MPMX19_05893at 29.495 kb on + strand, within MPMX19_05893at 29.495 kb on + strand, within MPMX19_05893at 29.495 kb on + strand, within MPMX19_05893at 29.495 kb on + strand, within MPMX19_05893at 29.495 kb on + strand, within MPMX19_05893at 29.496 kb on - strand, within MPMX19_05893at 29.496 kb on - strand, within MPMX19_05893at 29.496 kb on - strand, within MPMX19_05893at 29.496 kb on - strand, within MPMX19_05893at 29.496 kb on - strand, within MPMX19_05893at 29.496 kb on - strand, within MPMX19_05893at 29.496 kb on - strand, within MPMX19_05893at 29.496 kb on - strand, within MPMX19_05893at 29.496 kb on - strand, within MPMX19_05893at 29.496 kb on - strand, within MPMX19_05893at 29.496 kb on - strand, within MPMX19_05893at 29.496 kb on - strand, within MPMX19_05893at 29.918 kb on + strandat 29.918 kb on + strandat 29.919 kb on - strandat 30.028 kb on - strandat 30.065 kb on + strandat 30.073 kb on + strandat 30.073 kb on + strandat 30.073 kb on + strandat 30.073 kb on + strandat 30.073 kb on + strandat 30.073 kb on + strandat 30.073 kb on + strandat 30.074 kb on - strandat 30.074 kb on - strandat 30.074 kb on - strandat 30.074 kb on - strandat 30.074 kb on - strandat 30.108 kb on + strandat 30.109 kb on - strandat 30.109 kb on - strandat 30.109 kb on - strandat 30.128 kb on + strandat 30.128 kb on + strandat 30.129 kb on - strandat 30.129 kb on - strandat 30.129 kb on - strandat 30.129 kb on - strandat 30.161 kb on + strandat 30.162 kb on - strandat 30.162 kb on - strandat 30.164 kb on + strandat 30.165 kb on - strandat 30.165 kb on - strandat 30.165 kb on - strandat 30.271 kb on + strandat 30.271 kb on + strandat 30.271 kb on + strandat 30.271 kb on + strandat 30.271 kb on + strandat 30.271 kb on + strandat 30.271 kb on + strandat 30.271 kb on + strandat 30.271 kb on + strandat 30.271 kb on + strandat 30.271 kb on + strandat 30.271 kb on + strandat 30.271 kb on + strandat 30.272 kb on - strandat 30.272 kb on - strandat 30.272 kb on - strandat 30.272 kb on - strandat 30.272 kb on - strandat 30.272 kb on - strandat 30.272 kb on - strandat 30.272 kb on - strandat 30.272 kb on - strandat 30.272 kb on - strandat 30.406 kb on + strand, within MPMX19_05894at 30.406 kb on + strand, within MPMX19_05894at 30.406 kb on + strand, within MPMX19_05894at 30.407 kb on - strand, within MPMX19_05894at 30.407 kb on - strand, within MPMX19_05894at 30.407 kb on - strand, within MPMX19_05894at 30.448 kb on + strand, within MPMX19_05894at 30.448 kb on + strand, within MPMX19_05894at 30.448 kb on + strand, within MPMX19_05894at 30.448 kb on + strand, within MPMX19_05894at 30.448 kb on + strand, within MPMX19_05894at 30.448 kb on + strand, within MPMX19_05894at 30.448 kb on + strand, within MPMX19_05894at 30.448 kb on + strand, within MPMX19_05894at 30.448 kb on + strand, within MPMX19_05894at 30.448 kb on + strand, within MPMX19_05894at 30.449 kb on - strand, within MPMX19_05894at 30.449 kb on - strand, within MPMX19_05894at 30.449 kb on - strand, within MPMX19_05894at 30.449 kb on - strand, within MPMX19_05894at 30.449 kb on - strand, within MPMX19_05894at 30.449 kb on - strand, within MPMX19_05894at 30.487 kb on + strand, within MPMX19_05894at 30.487 kb on + strand, within MPMX19_05894at 30.487 kb on + strand, within MPMX19_05894at 30.488 kb on - strand, within MPMX19_05894at 30.488 kb on - strand, within MPMX19_05894at 30.488 kb on - strand, within MPMX19_05894at 30.488 kb on - strand, within MPMX19_05894at 30.764 kb on + strandat 30.765 kb on - strandat 30.792 kb on + strandat 30.792 kb on + strandat 30.792 kb on + strandat 30.793 kb on - strandat 30.793 kb on - strandat 30.868 kb on + strand, within MPMX19_05895at 30.868 kb on + strand, within MPMX19_05895at 30.868 kb on + strand, within MPMX19_05895at 30.868 kb on + strand, within MPMX19_05895at 30.868 kb on + strand, within MPMX19_05895at 30.868 kb on + strand, within MPMX19_05895at 30.868 kb on + strand, within MPMX19_05895at 30.868 kb on + strand, within MPMX19_05895at 30.868 kb on + strand, within MPMX19_05895at 30.868 kb on + strand, within MPMX19_05895at 30.868 kb on + strand, within MPMX19_05895at 30.868 kb on + strand, within MPMX19_05895at 30.868 kb on + strand, within MPMX19_05895at 30.869 kb on - strand, within MPMX19_05895at 30.869 kb on - strand, within MPMX19_05895at 30.869 kb on - strand, within MPMX19_05895at 30.869 kb on - strand, within MPMX19_05895at 30.869 kb on - strand, within MPMX19_05895at 30.869 kb on - strand, within MPMX19_05895at 30.869 kb on - strand, within MPMX19_05895at 30.869 kb on - strand, within MPMX19_05895at 30.869 kb on - strand, within MPMX19_05895at 30.869 kb on - strand, within MPMX19_05895at 30.869 kb on - strand, within MPMX19_05895at 30.869 kb on - strand, within MPMX19_05895at 30.869 kb on - strand, within MPMX19_05895at 31.222 kb on + strand, within MPMX19_05895at 31.223 kb on - strand, within MPMX19_05895at 31.344 kb on + strandat 31.345 kb on - strandat 31.345 kb on - strandat 31.345 kb on - strandat 31.416 kb on + strand, within MPMX19_05896at 31.416 kb on + strand, within MPMX19_05896at 31.417 kb on - strand, within MPMX19_05896at 31.417 kb on - strand, within MPMX19_05896at 31.417 kb on - strand, within MPMX19_05896at 31.417 kb on - strand, within MPMX19_05896at 31.424 kb on + strand, within MPMX19_05896at 31.425 kb on - strand, within MPMX19_05896at 31.507 kb on - strand, within MPMX19_05896

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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29,300 + MPMX19_05893 0.41 -1.5
29,300 + MPMX19_05893 0.41 +1.0
29,300 + MPMX19_05893 0.41 -1.5
29,300 + MPMX19_05893 0.41 -0.1
29,300 + MPMX19_05893 0.41 -1.7
29,300 + MPMX19_05893 0.41 -1.5
29,300 + MPMX19_05893 0.41 +0.0
29,300 + MPMX19_05893 0.41 -1.9
29,301 - MPMX19_05893 0.42 -1.9
29,301 - MPMX19_05893 0.42 -1.0
29,301 - MPMX19_05893 0.42 -2.9
29,324 + MPMX19_05893 0.43 +0.1
29,325 - MPMX19_05893 0.44 -0.1
29,348 + MPMX19_05893 0.45 +0.8
29,348 + MPMX19_05893 0.45 +0.0
29,420 + MPMX19_05893 0.51 -0.2
29,420 + MPMX19_05893 0.51 -1.1
29,420 + MPMX19_05893 0.51 -0.7
29,420 + MPMX19_05893 0.51 -0.6
29,421 - MPMX19_05893 0.51 -1.0
29,421 - MPMX19_05893 0.51 +0.8
29,459 + MPMX19_05893 0.55 +0.2
29,459 + MPMX19_05893 0.55 -0.9
29,459 + MPMX19_05893 0.55 -1.6
29,459 + MPMX19_05893 0.55 +0.4
29,459 + MPMX19_05893 0.55 -0.6
29,459 + MPMX19_05893 0.55 +1.2
29,459 + MPMX19_05893 0.55 -0.4
29,459 + MPMX19_05893 0.55 +1.6
29,459 + MPMX19_05893 0.55 -1.2
29,460 - MPMX19_05893 0.55 -1.3
29,460 - MPMX19_05893 0.55 -1.7
29,460 - MPMX19_05893 0.55 +0.0
29,460 - MPMX19_05893 0.55 -0.1
29,493 + MPMX19_05893 0.57 -0.6
29,493 + MPMX19_05893 0.57 +0.6
29,493 + MPMX19_05893 0.57 -0.3
29,493 + MPMX19_05893 0.57 +0.3
29,493 + MPMX19_05893 0.57 -1.0
29,493 + MPMX19_05893 0.57 -0.5
29,493 + MPMX19_05893 0.57 -2.0
29,493 + MPMX19_05893 0.57 -0.5
29,493 + MPMX19_05893 0.57 +0.6
29,493 + MPMX19_05893 0.57 -1.6
29,493 + MPMX19_05893 0.57 -0.8
29,493 + MPMX19_05893 0.57 +1.0
29,493 + MPMX19_05893 0.57 -1.0
29,494 - MPMX19_05893 0.57 +0.2
29,494 - MPMX19_05893 0.57 +0.2
29,494 - MPMX19_05893 0.57 +1.2
29,494 - MPMX19_05893 0.57 -0.6
29,494 - MPMX19_05893 0.57 +0.2
29,494 - MPMX19_05893 0.57 -0.1
29,494 - MPMX19_05893 0.57 +1.6
29,494 - MPMX19_05893 0.57 +0.2
29,495 + MPMX19_05893 0.57 -1.5
29,495 + MPMX19_05893 0.57 -1.9
29,495 + MPMX19_05893 0.57 -0.6
29,495 + MPMX19_05893 0.57 -0.5
29,495 + MPMX19_05893 0.57 +0.2
29,495 + MPMX19_05893 0.57 -1.2
29,495 + MPMX19_05893 0.57 +0.9
29,495 + MPMX19_05893 0.57 -0.6
29,495 + MPMX19_05893 0.57 -1.1
29,496 - MPMX19_05893 0.58 -1.5
29,496 - MPMX19_05893 0.58 -0.1
29,496 - MPMX19_05893 0.58 -0.1
29,496 - MPMX19_05893 0.58 +0.4
29,496 - MPMX19_05893 0.58 -1.6
29,496 - MPMX19_05893 0.58 -2.0
29,496 - MPMX19_05893 0.58 -1.0
29,496 - MPMX19_05893 0.58 -0.1
29,496 - MPMX19_05893 0.58 +0.9
29,496 - MPMX19_05893 0.58 +0.6
29,496 - MPMX19_05893 0.58 -2.1
29,496 - MPMX19_05893 0.58 -0.4
29,918 + -1.7
29,918 + +0.2
29,919 - +0.1
30,028 - -0.3
30,065 + +0.2
30,073 + +0.9
30,073 + -1.0
30,073 + -1.5
30,073 + -0.7
30,073 + +0.2
30,073 + -1.1
30,073 + -2.3
30,074 - +0.6
30,074 - -0.5
30,074 - -2.9
30,074 - +0.3
30,074 - -1.9
30,108 + -2.9
30,109 - +0.6
30,109 - -0.5
30,109 - +0.3
30,128 + -1.1
30,128 + -0.1
30,129 - +0.5
30,129 - +0.4
30,129 - +0.3
30,129 - -0.0
30,161 + -1.5
30,162 - -1.5
30,162 - +1.0
30,164 + -0.2
30,165 - +0.9
30,165 - -0.5
30,165 - +0.3
30,271 + -0.6
30,271 + +0.2
30,271 + -1.8
30,271 + -0.7
30,271 + -1.3
30,271 + +0.3
30,271 + -1.2
30,271 + -1.4
30,271 + -0.8
30,271 + -0.2
30,271 + +1.2
30,271 + -0.4
30,271 + +1.0
30,272 - -0.8
30,272 - -0.5
30,272 - -0.4
30,272 - +0.1
30,272 - -0.7
30,272 - -0.4
30,272 - -1.5
30,272 - +0.3
30,272 - -0.6
30,272 - -0.4
30,406 + MPMX19_05894 0.31 -0.8
30,406 + MPMX19_05894 0.31 +1.2
30,406 + MPMX19_05894 0.31 +0.1
30,407 - MPMX19_05894 0.32 -0.4
30,407 - MPMX19_05894 0.32 -1.7
30,407 - MPMX19_05894 0.32 +1.1
30,448 + MPMX19_05894 0.39 -1.6
30,448 + MPMX19_05894 0.39 +1.2
30,448 + MPMX19_05894 0.39 -0.5
30,448 + MPMX19_05894 0.39 -1.4
30,448 + MPMX19_05894 0.39 +0.9
30,448 + MPMX19_05894 0.39 -0.0
30,448 + MPMX19_05894 0.39 +0.1
30,448 + MPMX19_05894 0.39 +0.4
30,448 + MPMX19_05894 0.39 -1.0
30,448 + MPMX19_05894 0.39 +1.2
30,449 - MPMX19_05894 0.39 -1.7
30,449 - MPMX19_05894 0.39 -0.7
30,449 - MPMX19_05894 0.39 +0.2
30,449 - MPMX19_05894 0.39 +0.1
30,449 - MPMX19_05894 0.39 +0.0
30,449 - MPMX19_05894 0.39 -0.6
30,487 + MPMX19_05894 0.46 +0.1
30,487 + MPMX19_05894 0.46 +0.5
30,487 + MPMX19_05894 0.46 -1.0
30,488 - MPMX19_05894 0.47 -0.4
30,488 - MPMX19_05894 0.47 -1.1
30,488 - MPMX19_05894 0.47 +0.1
30,488 - MPMX19_05894 0.47 -1.1
30,764 + -0.5
30,765 - -1.3
30,792 + -1.0
30,792 + -1.1
30,792 + +0.6
30,793 - -1.2
30,793 - -0.0
30,868 + MPMX19_05895 0.13 -1.0
30,868 + MPMX19_05895 0.13 -0.0
30,868 + MPMX19_05895 0.13 -0.7
30,868 + MPMX19_05895 0.13 -0.2
30,868 + MPMX19_05895 0.13 +0.4
30,868 + MPMX19_05895 0.13 -0.4
30,868 + MPMX19_05895 0.13 -2.1
30,868 + MPMX19_05895 0.13 -0.4
30,868 + MPMX19_05895 0.13 -1.0
30,868 + MPMX19_05895 0.13 +0.2
30,868 + MPMX19_05895 0.13 +1.0
30,868 + MPMX19_05895 0.13 +0.0
30,868 + MPMX19_05895 0.13 -0.1
30,869 - MPMX19_05895 0.13 -1.6
30,869 - MPMX19_05895 0.13 -0.6
30,869 - MPMX19_05895 0.13 -0.6
30,869 - MPMX19_05895 0.13 -1.1
30,869 - MPMX19_05895 0.13 -0.4
30,869 - MPMX19_05895 0.13 -0.6
30,869 - MPMX19_05895 0.13 +0.2
30,869 - MPMX19_05895 0.13 -0.4
30,869 - MPMX19_05895 0.13 +1.0
30,869 - MPMX19_05895 0.13 -0.2
30,869 - MPMX19_05895 0.13 -0.9
30,869 - MPMX19_05895 0.13 +0.4
30,869 - MPMX19_05895 0.13 -0.1
31,222 + MPMX19_05895 0.81 +0.9
31,223 - MPMX19_05895 0.81 -0.1
31,344 + -1.2
31,345 - -2.1
31,345 - +0.1
31,345 - +1.2
31,416 + MPMX19_05896 0.31 -1.5
31,416 + MPMX19_05896 0.31 -0.2
31,417 - MPMX19_05896 0.31 -0.2
31,417 - MPMX19_05896 0.31 +0.8
31,417 - MPMX19_05896 0.31 -1.2
31,417 - MPMX19_05896 0.31 -0.6
31,424 + MPMX19_05896 0.33 +1.4
31,425 - MPMX19_05896 0.33 -1.6
31,507 - MPMX19_05896 0.58 -0.2

Or see this region's nucleotide sequence