Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05831 and MPMX19_05832 are separated by 252 nucleotides MPMX19_05832 and MPMX19_05833 are separated by 53 nucleotides
MPMX19_05831: MPMX19_05831 - Protein/nucleic acid deglycase 2, at 561,488 to 562,051
_05831
MPMX19_05832: MPMX19_05832 - hypothetical protein, at 562,304 to 564,001
_05832
MPMX19_05833: MPMX19_05833 - Cyclohexadienyl dehydrogenase, at 564,055 to 564,969
_05833
Position (kb) 562
563
564
565 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 561.457 kb on + strand at 561.457 kb on + strand at 561.457 kb on + strand at 561.457 kb on + strand at 561.457 kb on + strand at 561.457 kb on + strand at 561.458 kb on - strand at 561.487 kb on + strand at 561.487 kb on + strand at 561.487 kb on + strand at 561.488 kb on - strand at 561.488 kb on - strand at 561.488 kb on - strand at 561.488 kb on - strand at 561.488 kb on - strand at 561.488 kb on - strand at 561.488 kb on - strand at 561.577 kb on + strand, within MPMX19_05831 at 561.577 kb on + strand, within MPMX19_05831 at 561.578 kb on - strand, within MPMX19_05831 at 561.578 kb on - strand, within MPMX19_05831 at 561.659 kb on + strand, within MPMX19_05831 at 561.659 kb on + strand, within MPMX19_05831 at 561.659 kb on + strand, within MPMX19_05831 at 561.659 kb on + strand, within MPMX19_05831 at 561.659 kb on + strand, within MPMX19_05831 at 561.659 kb on + strand, within MPMX19_05831 at 561.659 kb on + strand, within MPMX19_05831 at 561.659 kb on + strand, within MPMX19_05831 at 561.660 kb on - strand, within MPMX19_05831 at 561.660 kb on - strand, within MPMX19_05831 at 561.660 kb on - strand, within MPMX19_05831 at 561.890 kb on + strand, within MPMX19_05831 at 562.128 kb on + strand at 562.128 kb on + strand at 562.128 kb on + strand at 562.209 kb on + strand at 562.209 kb on + strand at 562.228 kb on + strand at 562.231 kb on + strand at 562.232 kb on - strand at 562.232 kb on - strand at 562.232 kb on - strand at 562.249 kb on - strand at 562.249 kb on - strand at 562.249 kb on - strand at 562.529 kb on + strand, within MPMX19_05832 at 562.529 kb on + strand, within MPMX19_05832 at 562.529 kb on + strand, within MPMX19_05832 at 562.529 kb on + strand, within MPMX19_05832 at 562.530 kb on - strand, within MPMX19_05832 at 562.530 kb on - strand, within MPMX19_05832 at 562.530 kb on - strand, within MPMX19_05832 at 562.624 kb on + strand, within MPMX19_05832 at 562.688 kb on + strand, within MPMX19_05832 at 562.688 kb on + strand, within MPMX19_05832 at 562.688 kb on + strand, within MPMX19_05832 at 562.689 kb on - strand, within MPMX19_05832 at 562.868 kb on + strand, within MPMX19_05832 at 562.868 kb on + strand, within MPMX19_05832 at 562.868 kb on + strand, within MPMX19_05832 at 562.868 kb on + strand, within MPMX19_05832 at 562.868 kb on + strand, within MPMX19_05832 at 562.869 kb on - strand, within MPMX19_05832 at 562.869 kb on - strand, within MPMX19_05832 at 562.869 kb on - strand, within MPMX19_05832 at 562.869 kb on - strand, within MPMX19_05832 at 562.869 kb on - strand, within MPMX19_05832 at 563.999 kb on + strand at 563.999 kb on + strand at 563.999 kb on + strand at 563.999 kb on + strand at 563.999 kb on + strand at 564.000 kb on - strand at 564.000 kb on - strand at 564.056 kb on + strand at 564.056 kb on + strand at 564.056 kb on + strand at 564.056 kb on + strand at 564.056 kb on + strand at 564.056 kb on + strand at 564.056 kb on + strand at 564.056 kb on + strand at 564.056 kb on + strand at 564.057 kb on - strand at 564.057 kb on - strand at 564.057 kb on - strand at 564.057 kb on - strand at 564.057 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 561,457 + -1.8 561,457 + -1.8 561,457 + -0.9 561,457 + -0.2 561,457 + -0.7 561,457 + -0.6 561,458 - -0.4 561,487 + -0.5 561,487 + -0.5 561,487 + -0.5 561,488 - +0.1 561,488 - +1.7 561,488 - +0.3 561,488 - -0.8 561,488 - -1.5 561,488 - -0.5 561,488 - -0.4 561,577 + MPMX19_05831 0.16 +1.7 561,577 + MPMX19_05831 0.16 +0.7 561,578 - MPMX19_05831 0.16 +0.5 561,578 - MPMX19_05831 0.16 -0.1 561,659 + MPMX19_05831 0.30 +0.5 561,659 + MPMX19_05831 0.30 +0.9 561,659 + MPMX19_05831 0.30 -1.2 561,659 + MPMX19_05831 0.30 -0.4 561,659 + MPMX19_05831 0.30 -0.9 561,659 + MPMX19_05831 0.30 -1.5 561,659 + MPMX19_05831 0.30 +1.0 561,659 + MPMX19_05831 0.30 -0.1 561,660 - MPMX19_05831 0.30 -0.5 561,660 - MPMX19_05831 0.30 -1.1 561,660 - MPMX19_05831 0.30 +1.4 561,890 + MPMX19_05831 0.71 -1.6 562,128 + -0.5 562,128 + -0.2 562,128 + -1.6 562,209 + -0.5 562,209 + -0.5 562,228 + -1.0 562,231 + -1.8 562,232 - -1.1 562,232 - -0.1 562,232 - -0.5 562,249 - +1.0 562,249 - -1.8 562,249 - -1.2 562,529 + MPMX19_05832 0.13 +0.3 562,529 + MPMX19_05832 0.13 -0.2 562,529 + MPMX19_05832 0.13 -0.2 562,529 + MPMX19_05832 0.13 +0.6 562,530 - MPMX19_05832 0.13 -2.0 562,530 - MPMX19_05832 0.13 -2.1 562,530 - MPMX19_05832 0.13 -0.8 562,624 + MPMX19_05832 0.19 -0.1 562,688 + MPMX19_05832 0.23 -0.3 562,688 + MPMX19_05832 0.23 -1.0 562,688 + MPMX19_05832 0.23 +0.1 562,689 - MPMX19_05832 0.23 -1.1 562,868 + MPMX19_05832 0.33 -1.2 562,868 + MPMX19_05832 0.33 -0.7 562,868 + MPMX19_05832 0.33 -0.4 562,868 + MPMX19_05832 0.33 -1.9 562,868 + MPMX19_05832 0.33 -0.7 562,869 - MPMX19_05832 0.33 -1.7 562,869 - MPMX19_05832 0.33 -0.6 562,869 - MPMX19_05832 0.33 -1.5 562,869 - MPMX19_05832 0.33 +0.1 562,869 - MPMX19_05832 0.33 -0.9 563,999 + -0.1 563,999 + -1.1 563,999 + +0.3 563,999 + +0.1 563,999 + -0.4 564,000 - -0.9 564,000 - +0.1 564,056 + +0.6 564,056 + +0.6 564,056 + +0.9 564,056 + -1.4 564,056 + -2.8 564,056 + -0.2 564,056 + -1.2 564,056 + -0.9 564,056 + +0.6 564,057 - -0.2 564,057 - -0.8 564,057 - -0.7 564,057 - +0.2 564,057 - +0.3
Or see this region's nucleotide sequence