Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05825 and MPMX19_05826 are separated by 269 nucleotides MPMX19_05826 and MPMX19_05827 are separated by 6 nucleotides MPMX19_05827 and MPMX19_05828 are separated by 235 nucleotides
MPMX19_05825: MPMX19_05825 - hypothetical protein, at 553,417 to 554,061
_05825
MPMX19_05826: MPMX19_05826 - hypothetical protein, at 554,331 to 554,840
_05826
MPMX19_05827: MPMX19_05827 - hypothetical protein, at 554,847 to 556,628
_05827
MPMX19_05828: MPMX19_05828 - Ferredoxin--NADP reductase, at 556,864 to 557,637
_05828
Position (kb) 554
555
556
557 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 554.078 kb on + strand at 554.079 kb on - strand at 554.079 kb on - strand at 554.104 kb on + strand at 554.104 kb on + strand at 554.104 kb on + strand at 554.104 kb on + strand at 554.105 kb on - strand at 554.105 kb on - strand at 554.105 kb on - strand at 554.105 kb on - strand at 554.105 kb on - strand at 554.105 kb on - strand at 554.144 kb on + strand at 554.144 kb on + strand at 554.144 kb on + strand at 554.144 kb on + strand at 554.144 kb on + strand at 554.144 kb on + strand at 554.144 kb on + strand at 554.144 kb on + strand at 554.144 kb on + strand at 554.144 kb on + strand at 554.144 kb on + strand at 554.144 kb on + strand at 554.144 kb on + strand at 554.144 kb on + strand at 554.144 kb on + strand at 554.144 kb on + strand at 554.145 kb on - strand at 554.145 kb on - strand at 554.145 kb on - strand at 554.145 kb on - strand at 554.145 kb on - strand at 554.145 kb on - strand at 554.145 kb on - strand at 554.145 kb on - strand at 554.553 kb on + strand, within MPMX19_05826 at 554.553 kb on + strand, within MPMX19_05826 at 554.553 kb on + strand, within MPMX19_05826 at 554.553 kb on + strand, within MPMX19_05826 at 554.553 kb on + strand, within MPMX19_05826 at 554.554 kb on - strand, within MPMX19_05826 at 554.554 kb on - strand, within MPMX19_05826 at 554.554 kb on - strand, within MPMX19_05826 at 554.554 kb on - strand, within MPMX19_05826 at 554.554 kb on - strand, within MPMX19_05826 at 554.554 kb on - strand, within MPMX19_05826 at 554.998 kb on + strand at 554.998 kb on + strand at 554.998 kb on + strand at 554.999 kb on - strand at 554.999 kb on - strand at 554.999 kb on - strand at 554.999 kb on - strand at 555.259 kb on + strand, within MPMX19_05827 at 555.259 kb on + strand, within MPMX19_05827 at 555.259 kb on + strand, within MPMX19_05827 at 555.260 kb on - strand, within MPMX19_05827 at 555.260 kb on - strand, within MPMX19_05827 at 555.260 kb on - strand, within MPMX19_05827 at 555.260 kb on - strand, within MPMX19_05827 at 555.292 kb on + strand, within MPMX19_05827 at 555.292 kb on + strand, within MPMX19_05827 at 555.292 kb on + strand, within MPMX19_05827 at 555.292 kb on + strand, within MPMX19_05827 at 555.292 kb on + strand, within MPMX19_05827 at 555.292 kb on + strand, within MPMX19_05827 at 555.292 kb on + strand, within MPMX19_05827 at 555.293 kb on - strand, within MPMX19_05827 at 555.293 kb on - strand, within MPMX19_05827 at 555.293 kb on - strand, within MPMX19_05827 at 555.293 kb on - strand, within MPMX19_05827 at 555.293 kb on - strand, within MPMX19_05827 at 555.293 kb on - strand, within MPMX19_05827 at 555.520 kb on + strand, within MPMX19_05827 at 555.520 kb on + strand, within MPMX19_05827 at 555.521 kb on - strand, within MPMX19_05827 at 555.521 kb on - strand, within MPMX19_05827 at 555.559 kb on + strand, within MPMX19_05827 at 555.559 kb on + strand, within MPMX19_05827 at 555.559 kb on + strand, within MPMX19_05827 at 555.559 kb on + strand, within MPMX19_05827 at 555.559 kb on + strand, within MPMX19_05827 at 555.559 kb on + strand, within MPMX19_05827 at 555.559 kb on + strand, within MPMX19_05827 at 555.559 kb on + strand, within MPMX19_05827 at 555.559 kb on + strand, within MPMX19_05827 at 555.559 kb on + strand, within MPMX19_05827 at 555.559 kb on + strand, within MPMX19_05827 at 555.559 kb on + strand, within MPMX19_05827 at 555.559 kb on + strand, within MPMX19_05827 at 555.559 kb on + strand, within MPMX19_05827 at 555.560 kb on - strand, within MPMX19_05827 at 555.560 kb on - strand, within MPMX19_05827 at 555.560 kb on - strand, within MPMX19_05827 at 555.560 kb on - strand, within MPMX19_05827 at 555.560 kb on - strand, within MPMX19_05827 at 555.560 kb on - strand, within MPMX19_05827 at 555.560 kb on - strand, within MPMX19_05827 at 555.560 kb on - strand, within MPMX19_05827 at 555.560 kb on - strand, within MPMX19_05827 at 555.560 kb on - strand, within MPMX19_05827 at 555.560 kb on - strand, within MPMX19_05827 at 555.560 kb on - strand, within MPMX19_05827 at 555.560 kb on - strand, within MPMX19_05827 at 555.560 kb on - strand, within MPMX19_05827 at 555.751 kb on + strand, within MPMX19_05827 at 555.751 kb on + strand, within MPMX19_05827 at 555.751 kb on + strand, within MPMX19_05827 at 555.751 kb on + strand, within MPMX19_05827 at 555.751 kb on + strand, within MPMX19_05827 at 555.751 kb on + strand, within MPMX19_05827 at 555.751 kb on + strand, within MPMX19_05827 at 555.751 kb on + strand, within MPMX19_05827 at 555.751 kb on + strand, within MPMX19_05827 at 555.751 kb on + strand, within MPMX19_05827 at 555.751 kb on + strand, within MPMX19_05827 at 555.751 kb on + strand, within MPMX19_05827 at 555.751 kb on + strand, within MPMX19_05827 at 555.751 kb on + strand, within MPMX19_05827 at 555.751 kb on + strand, within MPMX19_05827 at 555.752 kb on - strand, within MPMX19_05827 at 555.752 kb on - strand, within MPMX19_05827 at 555.752 kb on - strand, within MPMX19_05827 at 555.752 kb on - strand, within MPMX19_05827 at 555.752 kb on - strand, within MPMX19_05827 at 555.752 kb on - strand, within MPMX19_05827 at 555.752 kb on - strand, within MPMX19_05827 at 555.752 kb on - strand, within MPMX19_05827 at 555.752 kb on - strand, within MPMX19_05827 at 555.752 kb on - strand, within MPMX19_05827 at 555.752 kb on - strand, within MPMX19_05827 at 555.826 kb on + strand, within MPMX19_05827 at 555.826 kb on + strand, within MPMX19_05827 at 555.826 kb on + strand, within MPMX19_05827 at 555.827 kb on - strand, within MPMX19_05827 at 555.827 kb on - strand, within MPMX19_05827 at 555.827 kb on - strand, within MPMX19_05827 at 555.827 kb on - strand, within MPMX19_05827 at 555.827 kb on - strand, within MPMX19_05827 at 555.988 kb on + strand, within MPMX19_05827 at 555.988 kb on + strand, within MPMX19_05827 at 555.988 kb on + strand, within MPMX19_05827 at 555.989 kb on - strand, within MPMX19_05827 at 556.002 kb on - strand, within MPMX19_05827 at 556.045 kb on + strand, within MPMX19_05827 at 556.045 kb on + strand, within MPMX19_05827 at 556.046 kb on - strand, within MPMX19_05827 at 556.046 kb on - strand, within MPMX19_05827 at 556.069 kb on + strand, within MPMX19_05827 at 556.069 kb on + strand, within MPMX19_05827 at 556.070 kb on - strand, within MPMX19_05827 at 556.070 kb on - strand, within MPMX19_05827 at 556.096 kb on + strand, within MPMX19_05827 at 556.097 kb on - strand, within MPMX19_05827 at 556.097 kb on - strand, within MPMX19_05827 at 556.097 kb on - strand, within MPMX19_05827 at 556.126 kb on + strand, within MPMX19_05827 at 556.126 kb on + strand, within MPMX19_05827 at 556.126 kb on + strand, within MPMX19_05827 at 556.127 kb on - strand, within MPMX19_05827 at 556.127 kb on - strand, within MPMX19_05827 at 556.169 kb on - strand, within MPMX19_05827 at 556.169 kb on - strand, within MPMX19_05827 at 556.390 kb on + strand, within MPMX19_05827 at 556.390 kb on + strand, within MPMX19_05827 at 556.390 kb on + strand, within MPMX19_05827 at 556.390 kb on + strand, within MPMX19_05827 at 556.390 kb on + strand, within MPMX19_05827 at 556.390 kb on + strand, within MPMX19_05827 at 556.390 kb on + strand, within MPMX19_05827 at 556.390 kb on + strand, within MPMX19_05827 at 556.390 kb on + strand, within MPMX19_05827 at 556.390 kb on + strand, within MPMX19_05827 at 556.390 kb on + strand, within MPMX19_05827 at 556.390 kb on + strand, within MPMX19_05827 at 556.390 kb on + strand, within MPMX19_05827 at 556.390 kb on + strand, within MPMX19_05827 at 556.390 kb on + strand, within MPMX19_05827 at 556.390 kb on + strand, within MPMX19_05827 at 556.390 kb on + strand, within MPMX19_05827 at 556.390 kb on + strand, within MPMX19_05827 at 556.390 kb on + strand, within MPMX19_05827 at 556.390 kb on + strand, within MPMX19_05827 at 556.390 kb on + strand, within MPMX19_05827 at 556.390 kb on + strand, within MPMX19_05827 at 556.390 kb on + strand, within MPMX19_05827 at 556.390 kb on + strand, within MPMX19_05827 at 556.391 kb on - strand, within MPMX19_05827 at 556.391 kb on - strand, within MPMX19_05827 at 556.391 kb on - strand, within MPMX19_05827 at 556.391 kb on - strand, within MPMX19_05827 at 556.391 kb on - strand, within MPMX19_05827 at 556.391 kb on - strand, within MPMX19_05827 at 556.391 kb on - strand, within MPMX19_05827 at 556.391 kb on - strand, within MPMX19_05827 at 556.391 kb on - strand, within MPMX19_05827 at 556.391 kb on - strand, within MPMX19_05827 at 556.391 kb on - strand, within MPMX19_05827 at 556.391 kb on - strand, within MPMX19_05827 at 556.391 kb on - strand, within MPMX19_05827 at 556.391 kb on - strand, within MPMX19_05827 at 556.391 kb on - strand, within MPMX19_05827 at 556.391 kb on - strand, within MPMX19_05827 at 556.391 kb on - strand, within MPMX19_05827 at 556.641 kb on + strand at 556.641 kb on + strand at 556.641 kb on + strand at 556.641 kb on + strand at 556.641 kb on + strand at 556.641 kb on + strand at 556.641 kb on + strand at 556.641 kb on + strand at 556.641 kb on + strand at 556.641 kb on + strand at 556.642 kb on - strand at 556.642 kb on - strand at 556.642 kb on - strand at 556.642 kb on - strand at 556.642 kb on - strand at 556.642 kb on - strand at 556.642 kb on - strand at 556.642 kb on - strand at 556.642 kb on - strand at 556.642 kb on - strand at 556.642 kb on - strand at 556.702 kb on + strand at 556.702 kb on + strand at 556.702 kb on + strand at 556.703 kb on - strand at 556.703 kb on - strand at 556.796 kb on + strand at 556.796 kb on + strand at 556.796 kb on + strand at 556.797 kb on - strand at 556.797 kb on - strand at 556.819 kb on - strand at 556.819 kb on - strand at 556.819 kb on - strand at 556.819 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 554,078 + -1.5 554,079 - +0.3 554,079 - -0.0 554,104 + +1.1 554,104 + -0.8 554,104 + -0.3 554,104 + -0.5 554,105 - -1.1 554,105 - +0.8 554,105 - +0.1 554,105 - +0.3 554,105 - -2.2 554,105 - -1.4 554,144 + -1.1 554,144 + +0.1 554,144 + -1.4 554,144 + +1.1 554,144 + -1.2 554,144 + +1.1 554,144 + -1.1 554,144 + +0.9 554,144 + -1.5 554,144 + -0.1 554,144 + -0.5 554,144 + +1.5 554,144 + -0.1 554,144 + +0.1 554,144 + +1.7 554,144 + -0.5 554,145 - -0.6 554,145 - -1.9 554,145 - +0.1 554,145 - +0.5 554,145 - -0.6 554,145 - -1.7 554,145 - -0.5 554,145 - +2.1 554,553 + MPMX19_05826 0.44 -2.0 554,553 + MPMX19_05826 0.44 +0.6 554,553 + MPMX19_05826 0.44 +3.1 554,553 + MPMX19_05826 0.44 +0.3 554,553 + MPMX19_05826 0.44 -0.8 554,554 - MPMX19_05826 0.44 -2.3 554,554 - MPMX19_05826 0.44 -0.1 554,554 - MPMX19_05826 0.44 -1.6 554,554 - MPMX19_05826 0.44 -0.7 554,554 - MPMX19_05826 0.44 -0.0 554,554 - MPMX19_05826 0.44 +0.3 554,998 + +0.6 554,998 + -1.0 554,998 + +0.9 554,999 - -0.5 554,999 - -0.4 554,999 - -0.5 554,999 - -0.2 555,259 + MPMX19_05827 0.23 -0.9 555,259 + MPMX19_05827 0.23 -0.7 555,259 + MPMX19_05827 0.23 -1.1 555,260 - MPMX19_05827 0.23 -1.1 555,260 - MPMX19_05827 0.23 +1.3 555,260 - MPMX19_05827 0.23 -0.1 555,260 - MPMX19_05827 0.23 -0.6 555,292 + MPMX19_05827 0.25 -1.1 555,292 + MPMX19_05827 0.25 -1.8 555,292 + MPMX19_05827 0.25 +1.1 555,292 + MPMX19_05827 0.25 -0.1 555,292 + MPMX19_05827 0.25 -1.3 555,292 + MPMX19_05827 0.25 +0.5 555,292 + MPMX19_05827 0.25 -0.1 555,293 - MPMX19_05827 0.25 -0.6 555,293 - MPMX19_05827 0.25 -0.8 555,293 - MPMX19_05827 0.25 +0.3 555,293 - MPMX19_05827 0.25 +0.0 555,293 - MPMX19_05827 0.25 -2.4 555,293 - MPMX19_05827 0.25 +0.5 555,520 + MPMX19_05827 0.38 -1.1 555,520 + MPMX19_05827 0.38 -1.6 555,521 - MPMX19_05827 0.38 -0.7 555,521 - MPMX19_05827 0.38 -0.6 555,559 + MPMX19_05827 0.40 -0.1 555,559 + MPMX19_05827 0.40 -1.5 555,559 + MPMX19_05827 0.40 +1.0 555,559 + MPMX19_05827 0.40 -0.7 555,559 + MPMX19_05827 0.40 -0.6 555,559 + MPMX19_05827 0.40 -0.1 555,559 + MPMX19_05827 0.40 -1.0 555,559 + MPMX19_05827 0.40 -1.4 555,559 + MPMX19_05827 0.40 +0.1 555,559 + MPMX19_05827 0.40 -0.4 555,559 + MPMX19_05827 0.40 -0.2 555,559 + MPMX19_05827 0.40 -1.2 555,559 + MPMX19_05827 0.40 +0.6 555,559 + MPMX19_05827 0.40 -1.8 555,560 - MPMX19_05827 0.40 -2.0 555,560 - MPMX19_05827 0.40 -0.5 555,560 - MPMX19_05827 0.40 -1.3 555,560 - MPMX19_05827 0.40 -1.2 555,560 - MPMX19_05827 0.40 -1.2 555,560 - MPMX19_05827 0.40 -0.8 555,560 - MPMX19_05827 0.40 -0.5 555,560 - MPMX19_05827 0.40 -0.7 555,560 - MPMX19_05827 0.40 -1.7 555,560 - MPMX19_05827 0.40 +1.1 555,560 - MPMX19_05827 0.40 -0.7 555,560 - MPMX19_05827 0.40 -1.2 555,560 - MPMX19_05827 0.40 -1.2 555,560 - MPMX19_05827 0.40 -0.7 555,751 + MPMX19_05827 0.51 +0.7 555,751 + MPMX19_05827 0.51 -0.5 555,751 + MPMX19_05827 0.51 -1.2 555,751 + MPMX19_05827 0.51 -0.1 555,751 + MPMX19_05827 0.51 +0.2 555,751 + MPMX19_05827 0.51 -1.5 555,751 + MPMX19_05827 0.51 +0.7 555,751 + MPMX19_05827 0.51 -1.5 555,751 + MPMX19_05827 0.51 -0.7 555,751 + MPMX19_05827 0.51 +0.1 555,751 + MPMX19_05827 0.51 -0.9 555,751 + MPMX19_05827 0.51 -2.5 555,751 + MPMX19_05827 0.51 +0.8 555,751 + MPMX19_05827 0.51 -0.5 555,751 + MPMX19_05827 0.51 -0.5 555,752 - MPMX19_05827 0.51 -2.8 555,752 - MPMX19_05827 0.51 -0.6 555,752 - MPMX19_05827 0.51 -2.3 555,752 - MPMX19_05827 0.51 -1.2 555,752 - MPMX19_05827 0.51 -2.7 555,752 - MPMX19_05827 0.51 -0.9 555,752 - MPMX19_05827 0.51 -0.9 555,752 - MPMX19_05827 0.51 -0.9 555,752 - MPMX19_05827 0.51 -0.8 555,752 - MPMX19_05827 0.51 -1.5 555,752 - MPMX19_05827 0.51 -0.4 555,826 + MPMX19_05827 0.55 -0.2 555,826 + MPMX19_05827 0.55 +0.7 555,826 + MPMX19_05827 0.55 -1.6 555,827 - MPMX19_05827 0.55 -1.5 555,827 - MPMX19_05827 0.55 -0.0 555,827 - MPMX19_05827 0.55 -2.4 555,827 - MPMX19_05827 0.55 -1.7 555,827 - MPMX19_05827 0.55 +0.5 555,988 + MPMX19_05827 0.64 -0.5 555,988 + MPMX19_05827 0.64 -2.8 555,988 + MPMX19_05827 0.64 +0.1 555,989 - MPMX19_05827 0.64 -0.3 556,002 - MPMX19_05827 0.65 -1.5 556,045 + MPMX19_05827 0.67 -1.4 556,045 + MPMX19_05827 0.67 +0.1 556,046 - MPMX19_05827 0.67 +0.4 556,046 - MPMX19_05827 0.67 -2.7 556,069 + MPMX19_05827 0.69 -2.6 556,069 + MPMX19_05827 0.69 +0.1 556,070 - MPMX19_05827 0.69 -0.2 556,070 - MPMX19_05827 0.69 +0.1 556,096 + MPMX19_05827 0.70 +0.1 556,097 - MPMX19_05827 0.70 +1.1 556,097 - MPMX19_05827 0.70 -0.6 556,097 - MPMX19_05827 0.70 +0.6 556,126 + MPMX19_05827 0.72 +0.5 556,126 + MPMX19_05827 0.72 -2.1 556,126 + MPMX19_05827 0.72 +0.2 556,127 - MPMX19_05827 0.72 -0.0 556,127 - MPMX19_05827 0.72 -0.4 556,169 - MPMX19_05827 0.74 -1.2 556,169 - MPMX19_05827 0.74 -0.8 556,390 + MPMX19_05827 0.87 -1.1 556,390 + MPMX19_05827 0.87 +0.1 556,390 + MPMX19_05827 0.87 -2.4 556,390 + MPMX19_05827 0.87 +0.5 556,390 + MPMX19_05827 0.87 +1.1 556,390 + MPMX19_05827 0.87 -0.2 556,390 + MPMX19_05827 0.87 -1.4 556,390 + MPMX19_05827 0.87 -1.4 556,390 + MPMX19_05827 0.87 -1.6 556,390 + MPMX19_05827 0.87 -0.0 556,390 + MPMX19_05827 0.87 +0.4 556,390 + MPMX19_05827 0.87 -1.0 556,390 + MPMX19_05827 0.87 -1.0 556,390 + MPMX19_05827 0.87 -1.3 556,390 + MPMX19_05827 0.87 +0.5 556,390 + MPMX19_05827 0.87 -0.5 556,390 + MPMX19_05827 0.87 +0.0 556,390 + MPMX19_05827 0.87 -2.0 556,390 + MPMX19_05827 0.87 -1.4 556,390 + MPMX19_05827 0.87 -1.4 556,390 + MPMX19_05827 0.87 -0.2 556,390 + MPMX19_05827 0.87 -1.5 556,390 + MPMX19_05827 0.87 -1.5 556,390 + MPMX19_05827 0.87 -1.1 556,391 - MPMX19_05827 0.87 -1.2 556,391 - MPMX19_05827 0.87 +0.5 556,391 - MPMX19_05827 0.87 +1.8 556,391 - MPMX19_05827 0.87 +0.3 556,391 - MPMX19_05827 0.87 +0.2 556,391 - MPMX19_05827 0.87 +0.5 556,391 - MPMX19_05827 0.87 -0.3 556,391 - MPMX19_05827 0.87 +0.9 556,391 - MPMX19_05827 0.87 +0.2 556,391 - MPMX19_05827 0.87 +0.1 556,391 - MPMX19_05827 0.87 -1.6 556,391 - MPMX19_05827 0.87 -0.1 556,391 - MPMX19_05827 0.87 -1.8 556,391 - MPMX19_05827 0.87 -1.0 556,391 - MPMX19_05827 0.87 -1.5 556,391 - MPMX19_05827 0.87 +0.5 556,391 - MPMX19_05827 0.87 -0.8 556,641 + -0.9 556,641 + -1.1 556,641 + +1.1 556,641 + -0.5 556,641 + +0.8 556,641 + +0.0 556,641 + -0.3 556,641 + -0.2 556,641 + -0.6 556,641 + -1.1 556,642 - -0.2 556,642 - -0.7 556,642 - +1.0 556,642 - +1.2 556,642 - +0.5 556,642 - -0.7 556,642 - -0.3 556,642 - -2.9 556,642 - +0.2 556,642 - -0.6 556,642 - +0.8 556,702 + -2.1 556,702 + +1.0 556,702 + -0.7 556,703 - -1.5 556,703 - +0.9 556,796 + -0.6 556,796 + +0.3 556,796 + +0.3 556,797 - -0.2 556,797 - -0.5 556,819 - -1.1 556,819 - -1.2 556,819 - -1.2 556,819 - -1.1
Or see this region's nucleotide sequence