Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05811 and MPMX19_05812 are separated by 290 nucleotides MPMX19_05812 and MPMX19_05813 are separated by 36 nucleotides
MPMX19_05811: MPMX19_05811 - 2,4-dienoyl-CoA reductase, at 537,631 to 539,682
_05811
MPMX19_05812: MPMX19_05812 - Hydroxypyruvate isomerase, at 539,973 to 540,767
_05812
MPMX19_05813: MPMX19_05813 - 2-hydroxy-3-oxopropionate reductase, at 540,804 to 541,688
_05813
Position (kb) 539
540
541 Strain fitness (log2 ratio) -2
-1
0
1
2 at 539.024 kb on + strand, within MPMX19_05811 at 539.024 kb on + strand, within MPMX19_05811 at 539.024 kb on + strand, within MPMX19_05811 at 539.024 kb on + strand, within MPMX19_05811 at 539.024 kb on + strand, within MPMX19_05811 at 539.025 kb on - strand, within MPMX19_05811 at 539.025 kb on - strand, within MPMX19_05811 at 539.025 kb on - strand, within MPMX19_05811 at 539.025 kb on - strand, within MPMX19_05811 at 539.025 kb on - strand, within MPMX19_05811 at 539.025 kb on - strand, within MPMX19_05811 at 539.025 kb on - strand, within MPMX19_05811 at 539.025 kb on - strand, within MPMX19_05811 at 539.025 kb on - strand, within MPMX19_05811 at 539.102 kb on + strand, within MPMX19_05811 at 539.103 kb on - strand, within MPMX19_05811 at 539.165 kb on + strand, within MPMX19_05811 at 539.165 kb on + strand, within MPMX19_05811 at 539.166 kb on - strand, within MPMX19_05811 at 539.166 kb on - strand, within MPMX19_05811 at 539.166 kb on - strand, within MPMX19_05811 at 539.166 kb on - strand, within MPMX19_05811 at 539.198 kb on + strand, within MPMX19_05811 at 539.198 kb on + strand, within MPMX19_05811 at 539.199 kb on - strand, within MPMX19_05811 at 539.234 kb on + strand, within MPMX19_05811 at 539.234 kb on + strand, within MPMX19_05811 at 539.234 kb on + strand, within MPMX19_05811 at 539.234 kb on + strand, within MPMX19_05811 at 539.235 kb on - strand, within MPMX19_05811 at 539.235 kb on - strand, within MPMX19_05811 at 539.235 kb on - strand, within MPMX19_05811 at 539.235 kb on - strand, within MPMX19_05811 at 539.235 kb on - strand, within MPMX19_05811 at 539.336 kb on + strand, within MPMX19_05811 at 539.336 kb on + strand, within MPMX19_05811 at 539.336 kb on + strand, within MPMX19_05811 at 539.336 kb on + strand, within MPMX19_05811 at 539.336 kb on + strand, within MPMX19_05811 at 539.336 kb on + strand, within MPMX19_05811 at 539.336 kb on + strand, within MPMX19_05811 at 539.337 kb on - strand, within MPMX19_05811 at 539.337 kb on - strand, within MPMX19_05811 at 539.337 kb on - strand, within MPMX19_05811 at 539.337 kb on - strand, within MPMX19_05811 at 539.337 kb on - strand, within MPMX19_05811 at 539.337 kb on - strand, within MPMX19_05811 at 539.342 kb on + strand, within MPMX19_05811 at 539.342 kb on + strand, within MPMX19_05811 at 539.342 kb on + strand, within MPMX19_05811 at 539.342 kb on + strand, within MPMX19_05811 at 539.342 kb on + strand, within MPMX19_05811 at 539.342 kb on + strand, within MPMX19_05811 at 539.343 kb on - strand, within MPMX19_05811 at 539.343 kb on - strand, within MPMX19_05811 at 539.343 kb on - strand, within MPMX19_05811 at 539.537 kb on + strand at 539.657 kb on + strand at 539.658 kb on - strand at 539.658 kb on - strand at 539.772 kb on + strand at 539.772 kb on + strand at 539.772 kb on + strand at 539.772 kb on + strand at 540.006 kb on + strand at 540.006 kb on + strand at 540.006 kb on + strand at 540.006 kb on + strand at 540.006 kb on + strand at 540.006 kb on + strand at 540.006 kb on + strand at 540.006 kb on + strand at 540.007 kb on - strand at 540.007 kb on - strand at 540.007 kb on - strand at 540.007 kb on - strand at 540.007 kb on - strand at 540.007 kb on - strand at 540.007 kb on - strand at 540.007 kb on - strand at 540.007 kb on - strand at 540.007 kb on - strand at 540.007 kb on - strand at 540.072 kb on + strand, within MPMX19_05812 at 540.072 kb on + strand, within MPMX19_05812 at 540.072 kb on + strand, within MPMX19_05812 at 540.072 kb on + strand, within MPMX19_05812 at 540.072 kb on + strand, within MPMX19_05812 at 540.073 kb on - strand, within MPMX19_05812 at 540.073 kb on - strand, within MPMX19_05812 at 540.073 kb on - strand, within MPMX19_05812 at 540.085 kb on - strand, within MPMX19_05812 at 540.249 kb on + strand, within MPMX19_05812 at 540.249 kb on + strand, within MPMX19_05812 at 540.249 kb on + strand, within MPMX19_05812 at 540.249 kb on + strand, within MPMX19_05812 at 540.249 kb on + strand, within MPMX19_05812 at 540.249 kb on + strand, within MPMX19_05812 at 540.249 kb on + strand, within MPMX19_05812 at 540.249 kb on + strand, within MPMX19_05812 at 540.250 kb on - strand, within MPMX19_05812 at 540.250 kb on - strand, within MPMX19_05812 at 540.250 kb on - strand, within MPMX19_05812 at 540.250 kb on - strand, within MPMX19_05812 at 540.250 kb on - strand, within MPMX19_05812 at 540.250 kb on - strand, within MPMX19_05812 at 540.354 kb on + strand, within MPMX19_05812 at 540.354 kb on + strand, within MPMX19_05812 at 540.354 kb on + strand, within MPMX19_05812 at 540.354 kb on + strand, within MPMX19_05812 at 540.354 kb on + strand, within MPMX19_05812 at 540.355 kb on - strand, within MPMX19_05812 at 540.432 kb on + strand, within MPMX19_05812 at 540.432 kb on + strand, within MPMX19_05812 at 540.432 kb on + strand, within MPMX19_05812 at 540.432 kb on + strand, within MPMX19_05812 at 540.432 kb on + strand, within MPMX19_05812 at 540.432 kb on + strand, within MPMX19_05812 at 540.433 kb on - strand, within MPMX19_05812 at 540.433 kb on - strand, within MPMX19_05812 at 540.433 kb on - strand, within MPMX19_05812 at 540.433 kb on - strand, within MPMX19_05812 at 540.433 kb on - strand, within MPMX19_05812 at 540.501 kb on + strand, within MPMX19_05812 at 540.501 kb on + strand, within MPMX19_05812 at 540.501 kb on + strand, within MPMX19_05812 at 540.501 kb on + strand, within MPMX19_05812 at 540.501 kb on + strand, within MPMX19_05812 at 540.502 kb on - strand, within MPMX19_05812 at 540.502 kb on - strand, within MPMX19_05812 at 540.502 kb on - strand, within MPMX19_05812 at 540.502 kb on - strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.633 kb on + strand, within MPMX19_05812 at 540.633 kb on + strand, within MPMX19_05812 at 540.633 kb on + strand, within MPMX19_05812 at 540.634 kb on - strand, within MPMX19_05812 at 540.634 kb on - strand, within MPMX19_05812 at 540.669 kb on + strand, within MPMX19_05812 at 540.670 kb on - strand, within MPMX19_05812 at 540.670 kb on - strand, within MPMX19_05812 at 540.693 kb on + strand at 540.693 kb on + strand at 540.693 kb on + strand at 540.694 kb on - strand at 540.694 kb on - strand at 540.694 kb on - strand at 540.694 kb on - strand at 540.741 kb on + strand at 540.741 kb on + strand at 540.741 kb on + strand at 540.741 kb on + strand at 540.741 kb on + strand at 540.741 kb on + strand at 540.742 kb on - strand at 540.742 kb on - strand at 540.797 kb on + strand at 540.797 kb on + strand at 540.798 kb on - strand at 540.798 kb on - strand at 540.803 kb on + strand at 540.803 kb on + strand at 540.803 kb on + strand at 540.803 kb on + strand at 540.804 kb on - strand at 540.804 kb on - strand at 540.804 kb on - strand at 540.804 kb on - strand at 540.804 kb on - strand at 540.882 kb on + strand at 540.882 kb on + strand at 540.882 kb on + strand at 540.882 kb on + strand at 540.882 kb on + strand at 540.882 kb on + strand at 540.882 kb on + strand at 540.882 kb on + strand at 540.882 kb on + strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 541.110 kb on + strand, within MPMX19_05813 at 541.110 kb on + strand, within MPMX19_05813 at 541.111 kb on - strand, within MPMX19_05813 at 541.111 kb on - strand, within MPMX19_05813 at 541.111 kb on - strand, within MPMX19_05813 at 541.111 kb on - strand, within MPMX19_05813 at 541.143 kb on + strand, within MPMX19_05813 at 541.143 kb on + strand, within MPMX19_05813 at 541.143 kb on + strand, within MPMX19_05813 at 541.144 kb on - strand, within MPMX19_05813 at 541.686 kb on + strand at 541.686 kb on + strand at 541.686 kb on + strand at 541.686 kb on + strand at 541.687 kb on - strand at 541.687 kb on - strand at 541.687 kb on - strand at 541.687 kb on - strand at 541.687 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 539,024 + MPMX19_05811 0.68 -1.1 539,024 + MPMX19_05811 0.68 +0.1 539,024 + MPMX19_05811 0.68 -0.4 539,024 + MPMX19_05811 0.68 -0.9 539,024 + MPMX19_05811 0.68 +1.0 539,025 - MPMX19_05811 0.68 +0.3 539,025 - MPMX19_05811 0.68 -0.6 539,025 - MPMX19_05811 0.68 -0.4 539,025 - MPMX19_05811 0.68 +0.1 539,025 - MPMX19_05811 0.68 -0.4 539,025 - MPMX19_05811 0.68 -0.5 539,025 - MPMX19_05811 0.68 -0.6 539,025 - MPMX19_05811 0.68 +0.5 539,025 - MPMX19_05811 0.68 -0.9 539,102 + MPMX19_05811 0.72 -0.5 539,103 - MPMX19_05811 0.72 -0.3 539,165 + MPMX19_05811 0.75 -0.7 539,165 + MPMX19_05811 0.75 +1.1 539,166 - MPMX19_05811 0.75 -0.3 539,166 - MPMX19_05811 0.75 -0.3 539,166 - MPMX19_05811 0.75 -0.4 539,166 - MPMX19_05811 0.75 +0.1 539,198 + MPMX19_05811 0.76 +0.9 539,198 + MPMX19_05811 0.76 -0.1 539,199 - MPMX19_05811 0.76 -1.1 539,234 + MPMX19_05811 0.78 -0.8 539,234 + MPMX19_05811 0.78 -0.0 539,234 + MPMX19_05811 0.78 -0.6 539,234 + MPMX19_05811 0.78 -1.1 539,235 - MPMX19_05811 0.78 -1.1 539,235 - MPMX19_05811 0.78 -1.1 539,235 - MPMX19_05811 0.78 -1.5 539,235 - MPMX19_05811 0.78 -1.7 539,235 - MPMX19_05811 0.78 -1.6 539,336 + MPMX19_05811 0.83 +0.1 539,336 + MPMX19_05811 0.83 +0.3 539,336 + MPMX19_05811 0.83 -0.7 539,336 + MPMX19_05811 0.83 -0.2 539,336 + MPMX19_05811 0.83 -0.7 539,336 + MPMX19_05811 0.83 -1.4 539,336 + MPMX19_05811 0.83 +0.1 539,337 - MPMX19_05811 0.83 -0.4 539,337 - MPMX19_05811 0.83 -0.7 539,337 - MPMX19_05811 0.83 -0.9 539,337 - MPMX19_05811 0.83 -0.8 539,337 - MPMX19_05811 0.83 +1.3 539,337 - MPMX19_05811 0.83 -0.7 539,342 + MPMX19_05811 0.83 +0.4 539,342 + MPMX19_05811 0.83 +0.1 539,342 + MPMX19_05811 0.83 -1.7 539,342 + MPMX19_05811 0.83 -1.4 539,342 + MPMX19_05811 0.83 -0.2 539,342 + MPMX19_05811 0.83 +0.3 539,343 - MPMX19_05811 0.83 -1.2 539,343 - MPMX19_05811 0.83 -1.5 539,343 - MPMX19_05811 0.83 -1.1 539,537 + +0.3 539,657 + -0.2 539,658 - -1.0 539,658 - +1.5 539,772 + +0.3 539,772 + -0.0 539,772 + -0.9 539,772 + +0.9 540,006 + -0.7 540,006 + +0.4 540,006 + -1.4 540,006 + +2.1 540,006 + -0.5 540,006 + -1.5 540,006 + -0.7 540,006 + +0.4 540,007 - +0.1 540,007 - -0.6 540,007 - +0.8 540,007 - +0.5 540,007 - +0.4 540,007 - -1.1 540,007 - +0.5 540,007 - +0.1 540,007 - -0.1 540,007 - -2.4 540,007 - -0.7 540,072 + MPMX19_05812 0.12 +0.5 540,072 + MPMX19_05812 0.12 +0.2 540,072 + MPMX19_05812 0.12 -0.7 540,072 + MPMX19_05812 0.12 +0.3 540,072 + MPMX19_05812 0.12 +0.3 540,073 - MPMX19_05812 0.13 +0.5 540,073 - MPMX19_05812 0.13 -0.2 540,073 - MPMX19_05812 0.13 -1.0 540,085 - MPMX19_05812 0.14 -0.9 540,249 + MPMX19_05812 0.35 -0.3 540,249 + MPMX19_05812 0.35 -0.1 540,249 + MPMX19_05812 0.35 -1.5 540,249 + MPMX19_05812 0.35 +0.9 540,249 + MPMX19_05812 0.35 -0.5 540,249 + MPMX19_05812 0.35 -0.5 540,249 + MPMX19_05812 0.35 +0.1 540,249 + MPMX19_05812 0.35 -0.4 540,250 - MPMX19_05812 0.35 -1.2 540,250 - MPMX19_05812 0.35 -0.5 540,250 - MPMX19_05812 0.35 -0.2 540,250 - MPMX19_05812 0.35 +0.2 540,250 - MPMX19_05812 0.35 +1.1 540,250 - MPMX19_05812 0.35 +1.1 540,354 + MPMX19_05812 0.48 +0.1 540,354 + MPMX19_05812 0.48 -1.4 540,354 + MPMX19_05812 0.48 +0.4 540,354 + MPMX19_05812 0.48 -0.7 540,354 + MPMX19_05812 0.48 +0.5 540,355 - MPMX19_05812 0.48 -0.5 540,432 + MPMX19_05812 0.58 +0.5 540,432 + MPMX19_05812 0.58 +0.3 540,432 + MPMX19_05812 0.58 -0.2 540,432 + MPMX19_05812 0.58 -0.3 540,432 + MPMX19_05812 0.58 -1.5 540,432 + MPMX19_05812 0.58 -1.9 540,433 - MPMX19_05812 0.58 +0.1 540,433 - MPMX19_05812 0.58 +1.4 540,433 - MPMX19_05812 0.58 -0.7 540,433 - MPMX19_05812 0.58 +0.5 540,433 - MPMX19_05812 0.58 +0.4 540,501 + MPMX19_05812 0.66 +0.4 540,501 + MPMX19_05812 0.66 -1.1 540,501 + MPMX19_05812 0.66 +0.7 540,501 + MPMX19_05812 0.66 -0.5 540,501 + MPMX19_05812 0.66 -1.3 540,502 - MPMX19_05812 0.67 -0.5 540,502 - MPMX19_05812 0.67 -0.4 540,502 - MPMX19_05812 0.67 -0.3 540,502 - MPMX19_05812 0.67 -0.6 540,510 + MPMX19_05812 0.68 -0.2 540,510 + MPMX19_05812 0.68 -0.4 540,510 + MPMX19_05812 0.68 +1.1 540,510 + MPMX19_05812 0.68 -1.2 540,510 + MPMX19_05812 0.68 +0.0 540,510 + MPMX19_05812 0.68 -1.5 540,510 + MPMX19_05812 0.68 +0.1 540,510 + MPMX19_05812 0.68 +0.0 540,510 + MPMX19_05812 0.68 +0.2 540,510 + MPMX19_05812 0.68 +0.7 540,510 + MPMX19_05812 0.68 +0.7 540,510 + MPMX19_05812 0.68 -1.5 540,510 + MPMX19_05812 0.68 +0.1 540,510 + MPMX19_05812 0.68 -0.3 540,510 + MPMX19_05812 0.68 +0.0 540,510 + MPMX19_05812 0.68 -0.8 540,510 + MPMX19_05812 0.68 -0.2 540,511 - MPMX19_05812 0.68 +0.1 540,511 - MPMX19_05812 0.68 -1.2 540,511 - MPMX19_05812 0.68 +0.2 540,511 - MPMX19_05812 0.68 +1.0 540,511 - MPMX19_05812 0.68 -1.3 540,511 - MPMX19_05812 0.68 +0.4 540,511 - MPMX19_05812 0.68 -1.5 540,511 - MPMX19_05812 0.68 +0.3 540,511 - MPMX19_05812 0.68 -0.8 540,511 - MPMX19_05812 0.68 -1.2 540,511 - MPMX19_05812 0.68 -0.8 540,511 - MPMX19_05812 0.68 -1.0 540,511 - MPMX19_05812 0.68 -0.2 540,511 - MPMX19_05812 0.68 -0.3 540,633 + MPMX19_05812 0.83 -0.7 540,633 + MPMX19_05812 0.83 -0.2 540,633 + MPMX19_05812 0.83 +0.1 540,634 - MPMX19_05812 0.83 +0.6 540,634 - MPMX19_05812 0.83 -1.8 540,669 + MPMX19_05812 0.88 +0.9 540,670 - MPMX19_05812 0.88 -2.0 540,670 - MPMX19_05812 0.88 -0.8 540,693 + -0.4 540,693 + -1.4 540,693 + -0.5 540,694 - -1.9 540,694 - +0.1 540,694 - -1.1 540,694 - -0.9 540,741 + +0.1 540,741 + -0.9 540,741 + -1.1 540,741 + -1.2 540,741 + +0.4 540,741 + +0.1 540,742 - -0.9 540,742 - -0.5 540,797 + -0.4 540,797 + +0.8 540,798 - -0.2 540,798 - +0.9 540,803 + -0.6 540,803 + +1.4 540,803 + -1.8 540,803 + +0.4 540,804 - -1.2 540,804 - -1.1 540,804 - -1.9 540,804 - +0.1 540,804 - -0.8 540,882 + -1.1 540,882 + -1.5 540,882 + -0.2 540,882 + +1.1 540,882 + -0.5 540,882 + -2.1 540,882 + -0.2 540,882 + -1.4 540,882 + -0.4 540,883 - -0.4 540,883 - -1.5 540,883 - -0.9 540,883 - -1.2 540,883 - +0.2 540,883 - -2.0 540,883 - -0.2 540,883 - +0.2 540,883 - -0.7 540,883 - -1.0 540,883 - -0.0 540,883 - +0.4 540,883 - -0.3 540,883 - +0.5 540,883 - -1.5 540,883 - -1.1 540,883 - +0.2 540,883 - -2.7 540,883 - -1.6 540,883 - -1.2 540,883 - +0.8 541,110 + MPMX19_05813 0.35 -0.0 541,110 + MPMX19_05813 0.35 -0.9 541,111 - MPMX19_05813 0.35 -0.2 541,111 - MPMX19_05813 0.35 -0.5 541,111 - MPMX19_05813 0.35 -0.9 541,111 - MPMX19_05813 0.35 -0.5 541,143 + MPMX19_05813 0.38 +0.3 541,143 + MPMX19_05813 0.38 -0.2 541,143 + MPMX19_05813 0.38 -0.5 541,144 - MPMX19_05813 0.38 -0.4 541,686 + -0.4 541,686 + -0.2 541,686 + -0.1 541,686 + -1.0 541,687 - -0.9 541,687 - -0.4 541,687 - -2.4 541,687 - +0.1 541,687 - +0.3
Or see this region's nucleotide sequence