Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05785 and MPMX19_05786 are separated by 154 nucleotides MPMX19_05786 and MPMX19_05787 are separated by 15 nucleotides MPMX19_05787 and MPMX19_05788 are separated by 236 nucleotides
MPMX19_05785: MPMX19_05785 - hypothetical protein, at 508,338 to 509,354
_05785
MPMX19_05786: MPMX19_05786 - HTH-type transcriptional repressor RspR, at 509,509 to 510,267
_05786
MPMX19_05787: MPMX19_05787 - Methylglyoxal synthase, at 510,283 to 510,750
_05787
MPMX19_05788: MPMX19_05788 - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase, at 510,987 to 511,823
_05788
Position (kb) 509
510
511 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 508.768 kb on - strand, within MPMX19_05785 at 508.800 kb on + strand, within MPMX19_05785 at 508.800 kb on + strand, within MPMX19_05785 at 508.801 kb on - strand, within MPMX19_05785 at 508.801 kb on - strand, within MPMX19_05785 at 508.902 kb on + strand, within MPMX19_05785 at 508.902 kb on + strand, within MPMX19_05785 at 508.902 kb on + strand, within MPMX19_05785 at 508.902 kb on + strand, within MPMX19_05785 at 508.902 kb on + strand, within MPMX19_05785 at 508.902 kb on + strand, within MPMX19_05785 at 508.902 kb on + strand, within MPMX19_05785 at 508.902 kb on + strand, within MPMX19_05785 at 508.902 kb on + strand, within MPMX19_05785 at 508.903 kb on - strand, within MPMX19_05785 at 508.903 kb on - strand, within MPMX19_05785 at 508.903 kb on - strand, within MPMX19_05785 at 508.903 kb on - strand, within MPMX19_05785 at 508.903 kb on - strand, within MPMX19_05785 at 508.903 kb on - strand, within MPMX19_05785 at 508.903 kb on - strand, within MPMX19_05785 at 508.903 kb on - strand, within MPMX19_05785 at 508.903 kb on - strand, within MPMX19_05785 at 508.903 kb on - strand, within MPMX19_05785 at 508.903 kb on - strand, within MPMX19_05785 at 508.903 kb on - strand, within MPMX19_05785 at 508.903 kb on - strand, within MPMX19_05785 at 508.912 kb on - strand, within MPMX19_05785 at 508.965 kb on + strand, within MPMX19_05785 at 508.965 kb on + strand, within MPMX19_05785 at 508.965 kb on + strand, within MPMX19_05785 at 508.965 kb on + strand, within MPMX19_05785 at 508.965 kb on + strand, within MPMX19_05785 at 508.966 kb on - strand, within MPMX19_05785 at 508.966 kb on - strand, within MPMX19_05785 at 508.966 kb on - strand, within MPMX19_05785 at 509.004 kb on + strand, within MPMX19_05785 at 509.004 kb on + strand, within MPMX19_05785 at 509.004 kb on - strand, within MPMX19_05785 at 509.005 kb on - strand, within MPMX19_05785 at 509.005 kb on - strand, within MPMX19_05785 at 509.005 kb on - strand, within MPMX19_05785 at 509.005 kb on - strand, within MPMX19_05785 at 509.005 kb on - strand, within MPMX19_05785 at 509.088 kb on + strand, within MPMX19_05785 at 509.089 kb on - strand, within MPMX19_05785 at 509.089 kb on - strand, within MPMX19_05785 at 509.316 kb on + strand at 509.316 kb on + strand at 509.317 kb on - strand at 509.317 kb on - strand at 509.352 kb on + strand at 509.352 kb on + strand at 509.352 kb on + strand at 509.352 kb on + strand at 509.352 kb on + strand at 509.352 kb on + strand at 509.352 kb on + strand at 509.353 kb on - strand at 509.353 kb on - strand at 509.353 kb on - strand at 509.353 kb on - strand at 509.353 kb on - strand at 509.353 kb on - strand at 509.452 kb on + strand at 509.452 kb on + strand at 509.453 kb on - strand at 509.454 kb on + strand at 509.454 kb on + strand at 509.454 kb on + strand at 509.454 kb on + strand at 509.454 kb on + strand at 509.454 kb on + strand at 509.454 kb on + strand at 509.454 kb on + strand at 509.454 kb on + strand at 509.455 kb on - strand at 509.455 kb on - strand at 509.455 kb on - strand at 509.455 kb on - strand at 509.457 kb on + strand at 509.457 kb on + strand at 509.457 kb on + strand at 509.457 kb on + strand at 509.458 kb on - strand at 509.458 kb on - strand at 509.458 kb on - strand at 509.458 kb on - strand at 509.458 kb on - strand at 509.460 kb on + strand at 509.461 kb on - strand at 509.461 kb on - strand at 509.477 kb on + strand at 509.508 kb on + strand at 509.508 kb on + strand at 509.508 kb on + strand at 509.508 kb on + strand at 509.508 kb on + strand at 509.509 kb on - strand at 509.509 kb on - strand at 509.509 kb on - strand at 509.509 kb on - strand at 509.509 kb on - strand at 509.529 kb on + strand at 509.635 kb on + strand, within MPMX19_05786 at 509.635 kb on + strand, within MPMX19_05786 at 509.635 kb on + strand, within MPMX19_05786 at 509.635 kb on + strand, within MPMX19_05786 at 509.635 kb on + strand, within MPMX19_05786 at 509.636 kb on - strand, within MPMX19_05786 at 509.636 kb on - strand, within MPMX19_05786 at 509.636 kb on - strand, within MPMX19_05786 at 509.636 kb on - strand, within MPMX19_05786 at 509.636 kb on - strand, within MPMX19_05786 at 509.636 kb on - strand, within MPMX19_05786 at 509.717 kb on - strand, within MPMX19_05786 at 509.717 kb on - strand, within MPMX19_05786 at 509.717 kb on - strand, within MPMX19_05786 at 509.717 kb on - strand, within MPMX19_05786 at 509.717 kb on - strand, within MPMX19_05786 at 509.717 kb on - strand, within MPMX19_05786 at 509.717 kb on - strand, within MPMX19_05786 at 509.881 kb on + strand, within MPMX19_05786 at 510.244 kb on + strand at 510.245 kb on - strand at 510.245 kb on - strand at 510.253 kb on + strand at 510.254 kb on - strand at 510.254 kb on - strand at 510.254 kb on - strand at 510.254 kb on - strand at 510.302 kb on + strand at 510.303 kb on - strand at 510.303 kb on - strand at 510.332 kb on + strand, within MPMX19_05787 at 510.333 kb on - strand, within MPMX19_05787 at 510.404 kb on + strand, within MPMX19_05787 at 510.404 kb on + strand, within MPMX19_05787 at 510.404 kb on + strand, within MPMX19_05787 at 510.404 kb on + strand, within MPMX19_05787 at 510.404 kb on + strand, within MPMX19_05787 at 510.405 kb on - strand, within MPMX19_05787 at 510.405 kb on - strand, within MPMX19_05787 at 510.405 kb on - strand, within MPMX19_05787 at 510.405 kb on - strand, within MPMX19_05787 at 510.405 kb on - strand, within MPMX19_05787 at 510.405 kb on - strand, within MPMX19_05787 at 510.405 kb on - strand, within MPMX19_05787 at 510.405 kb on - strand, within MPMX19_05787 at 510.405 kb on - strand, within MPMX19_05787 at 510.405 kb on - strand, within MPMX19_05787 at 510.405 kb on - strand, within MPMX19_05787 at 510.782 kb on - strand at 510.782 kb on - strand at 510.785 kb on - strand at 510.787 kb on - strand at 510.787 kb on - strand at 510.898 kb on + strand at 510.898 kb on + strand at 510.898 kb on + strand at 510.899 kb on - strand at 510.899 kb on - strand at 510.899 kb on - strand at 510.899 kb on - strand at 510.899 kb on - strand at 510.899 kb on - strand at 510.971 kb on + strand at 510.971 kb on + strand at 510.971 kb on + strand at 510.972 kb on - strand at 510.972 kb on - strand at 510.972 kb on - strand at 511.107 kb on + strand, within MPMX19_05788 at 511.107 kb on + strand, within MPMX19_05788 at 511.107 kb on + strand, within MPMX19_05788 at 511.107 kb on + strand, within MPMX19_05788 at 511.107 kb on + strand, within MPMX19_05788 at 511.107 kb on + strand, within MPMX19_05788 at 511.107 kb on + strand, within MPMX19_05788 at 511.107 kb on + strand, within MPMX19_05788 at 511.107 kb on + strand, within MPMX19_05788 at 511.107 kb on + strand, within MPMX19_05788 at 511.107 kb on + strand, within MPMX19_05788 at 511.107 kb on + strand, within MPMX19_05788 at 511.108 kb on - strand, within MPMX19_05788 at 511.108 kb on - strand, within MPMX19_05788 at 511.108 kb on - strand, within MPMX19_05788 at 511.108 kb on - strand, within MPMX19_05788 at 511.108 kb on - strand, within MPMX19_05788 at 511.108 kb on - strand, within MPMX19_05788 at 511.108 kb on - strand, within MPMX19_05788 at 511.108 kb on - strand, within MPMX19_05788 at 511.108 kb on - strand, within MPMX19_05788 at 511.108 kb on - strand, within MPMX19_05788 at 511.108 kb on - strand, within MPMX19_05788
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 508,768 - MPMX19_05785 0.42 -1.2 508,800 + MPMX19_05785 0.45 -0.4 508,800 + MPMX19_05785 0.45 -0.2 508,801 - MPMX19_05785 0.46 -1.2 508,801 - MPMX19_05785 0.46 -1.0 508,902 + MPMX19_05785 0.55 -1.2 508,902 + MPMX19_05785 0.55 -1.6 508,902 + MPMX19_05785 0.55 -1.8 508,902 + MPMX19_05785 0.55 -2.1 508,902 + MPMX19_05785 0.55 -0.5 508,902 + MPMX19_05785 0.55 -0.4 508,902 + MPMX19_05785 0.55 -0.5 508,902 + MPMX19_05785 0.55 -1.1 508,902 + MPMX19_05785 0.55 -0.8 508,903 - MPMX19_05785 0.56 -2.0 508,903 - MPMX19_05785 0.56 +0.2 508,903 - MPMX19_05785 0.56 -1.5 508,903 - MPMX19_05785 0.56 +0.3 508,903 - MPMX19_05785 0.56 -0.7 508,903 - MPMX19_05785 0.56 +0.9 508,903 - MPMX19_05785 0.56 -1.9 508,903 - MPMX19_05785 0.56 -0.4 508,903 - MPMX19_05785 0.56 +0.7 508,903 - MPMX19_05785 0.56 -1.5 508,903 - MPMX19_05785 0.56 -1.7 508,903 - MPMX19_05785 0.56 -0.9 508,903 - MPMX19_05785 0.56 +0.6 508,912 - MPMX19_05785 0.56 +0.5 508,965 + MPMX19_05785 0.62 -2.1 508,965 + MPMX19_05785 0.62 -1.5 508,965 + MPMX19_05785 0.62 +1.1 508,965 + MPMX19_05785 0.62 -0.7 508,965 + MPMX19_05785 0.62 -0.7 508,966 - MPMX19_05785 0.62 +0.5 508,966 - MPMX19_05785 0.62 +0.1 508,966 - MPMX19_05785 0.62 +0.1 509,004 + MPMX19_05785 0.65 -1.1 509,004 + MPMX19_05785 0.65 -0.2 509,004 - MPMX19_05785 0.65 -1.4 509,005 - MPMX19_05785 0.66 +0.2 509,005 - MPMX19_05785 0.66 -2.4 509,005 - MPMX19_05785 0.66 -1.1 509,005 - MPMX19_05785 0.66 -1.6 509,005 - MPMX19_05785 0.66 -1.8 509,088 + MPMX19_05785 0.74 -1.0 509,089 - MPMX19_05785 0.74 -0.9 509,089 - MPMX19_05785 0.74 -0.7 509,316 + -1.4 509,316 + -1.6 509,317 - +1.4 509,317 - -0.4 509,352 + +0.2 509,352 + -0.5 509,352 + -0.9 509,352 + +0.2 509,352 + -0.0 509,352 + -0.5 509,352 + -0.9 509,353 - +0.9 509,353 - -0.6 509,353 - -0.5 509,353 - +0.5 509,353 - +0.2 509,353 - +0.3 509,452 + -0.0 509,452 + -1.1 509,453 - -0.7 509,454 + -0.8 509,454 + +0.8 509,454 + +0.3 509,454 + -0.4 509,454 + -0.7 509,454 + -1.6 509,454 + +0.1 509,454 + +1.1 509,454 + -1.5 509,455 - +0.4 509,455 - -0.9 509,455 - -1.6 509,455 - +0.9 509,457 + -1.5 509,457 + -1.8 509,457 + +0.5 509,457 + -0.5 509,458 - -0.9 509,458 - +0.3 509,458 - -0.1 509,458 - +0.5 509,458 - +0.5 509,460 + -1.7 509,461 - -0.4 509,461 - -0.7 509,477 + -0.4 509,508 + -0.6 509,508 + -0.1 509,508 + -0.2 509,508 + -0.1 509,508 + -0.7 509,509 - +0.5 509,509 - +0.5 509,509 - +0.6 509,509 - -0.5 509,509 - -0.6 509,529 + -0.4 509,635 + MPMX19_05786 0.17 -0.6 509,635 + MPMX19_05786 0.17 -1.0 509,635 + MPMX19_05786 0.17 -1.2 509,635 + MPMX19_05786 0.17 -0.2 509,635 + MPMX19_05786 0.17 +0.2 509,636 - MPMX19_05786 0.17 -0.7 509,636 - MPMX19_05786 0.17 +0.1 509,636 - MPMX19_05786 0.17 +0.2 509,636 - MPMX19_05786 0.17 -0.3 509,636 - MPMX19_05786 0.17 -1.4 509,636 - MPMX19_05786 0.17 -1.5 509,717 - MPMX19_05786 0.27 -0.2 509,717 - MPMX19_05786 0.27 -1.1 509,717 - MPMX19_05786 0.27 -1.7 509,717 - MPMX19_05786 0.27 +1.1 509,717 - MPMX19_05786 0.27 +0.1 509,717 - MPMX19_05786 0.27 -0.6 509,717 - MPMX19_05786 0.27 -1.1 509,881 + MPMX19_05786 0.49 -0.7 510,244 + +0.6 510,245 - +0.3 510,245 - -1.6 510,253 + -0.5 510,254 - +0.7 510,254 - -0.2 510,254 - +1.1 510,254 - -0.9 510,302 + -1.6 510,303 - +0.3 510,303 - -1.1 510,332 + MPMX19_05787 0.10 -0.6 510,333 - MPMX19_05787 0.11 -0.7 510,404 + MPMX19_05787 0.26 +0.8 510,404 + MPMX19_05787 0.26 +0.5 510,404 + MPMX19_05787 0.26 +0.7 510,404 + MPMX19_05787 0.26 -0.3 510,404 + MPMX19_05787 0.26 +1.1 510,405 - MPMX19_05787 0.26 -0.5 510,405 - MPMX19_05787 0.26 -1.5 510,405 - MPMX19_05787 0.26 -0.8 510,405 - MPMX19_05787 0.26 -1.4 510,405 - MPMX19_05787 0.26 -0.8 510,405 - MPMX19_05787 0.26 +1.3 510,405 - MPMX19_05787 0.26 -0.5 510,405 - MPMX19_05787 0.26 +0.9 510,405 - MPMX19_05787 0.26 -0.9 510,405 - MPMX19_05787 0.26 -0.6 510,405 - MPMX19_05787 0.26 -0.1 510,782 - -0.3 510,782 - +0.3 510,785 - +0.3 510,787 - -1.2 510,787 - +0.8 510,898 + +0.5 510,898 + +0.1 510,898 + -0.5 510,899 - -1.2 510,899 - -1.1 510,899 - -0.9 510,899 - +0.4 510,899 - -2.7 510,899 - -0.6 510,971 + +0.0 510,971 + +0.4 510,971 + -0.8 510,972 - -0.4 510,972 - -0.2 510,972 - -0.8 511,107 + MPMX19_05788 0.14 -1.6 511,107 + MPMX19_05788 0.14 -0.9 511,107 + MPMX19_05788 0.14 +0.3 511,107 + MPMX19_05788 0.14 -2.5 511,107 + MPMX19_05788 0.14 +0.7 511,107 + MPMX19_05788 0.14 -0.5 511,107 + MPMX19_05788 0.14 +0.7 511,107 + MPMX19_05788 0.14 -1.2 511,107 + MPMX19_05788 0.14 +1.4 511,107 + MPMX19_05788 0.14 +1.1 511,107 + MPMX19_05788 0.14 +0.8 511,107 + MPMX19_05788 0.14 -0.9 511,108 - MPMX19_05788 0.14 -0.3 511,108 - MPMX19_05788 0.14 -0.3 511,108 - MPMX19_05788 0.14 -0.4 511,108 - MPMX19_05788 0.14 -0.9 511,108 - MPMX19_05788 0.14 -0.5 511,108 - MPMX19_05788 0.14 +0.4 511,108 - MPMX19_05788 0.14 +0.3 511,108 - MPMX19_05788 0.14 +0.2 511,108 - MPMX19_05788 0.14 -1.1 511,108 - MPMX19_05788 0.14 -0.1 511,108 - MPMX19_05788 0.14 -2.8
Or see this region's nucleotide sequence