Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05780

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05779 and MPMX19_05780 are separated by 74 nucleotidesMPMX19_05780 and MPMX19_05781 are separated by 2 nucleotides MPMX19_05779: MPMX19_05779 - Beta-ketoadipyl-CoA thiolase, at 501,722 to 502,930 _05779 MPMX19_05780: MPMX19_05780 - Phenylacetate-coenzyme A ligase, at 503,005 to 504,330 _05780 MPMX19_05781: MPMX19_05781 - hypothetical protein, at 504,333 to 504,995 _05781 Position (kb) 503 504 505Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 502.378 kb on - strand, within MPMX19_05779at 502.378 kb on - strand, within MPMX19_05779at 502.378 kb on - strand, within MPMX19_05779at 502.378 kb on - strand, within MPMX19_05779at 502.654 kb on - strand, within MPMX19_05779at 502.654 kb on - strand, within MPMX19_05779at 502.654 kb on - strand, within MPMX19_05779at 502.936 kb on + strandat 503.062 kb on + strandat 503.134 kb on + strandat 503.134 kb on + strandat 503.134 kb on + strandat 503.134 kb on + strandat 503.135 kb on - strandat 503.135 kb on - strandat 503.135 kb on - strandat 503.257 kb on + strand, within MPMX19_05780at 503.347 kb on + strand, within MPMX19_05780at 503.440 kb on + strand, within MPMX19_05780at 503.441 kb on - strand, within MPMX19_05780at 503.479 kb on + strand, within MPMX19_05780at 503.479 kb on + strand, within MPMX19_05780at 503.593 kb on + strand, within MPMX19_05780at 503.593 kb on + strand, within MPMX19_05780at 503.593 kb on + strand, within MPMX19_05780at 503.593 kb on + strand, within MPMX19_05780at 503.593 kb on + strand, within MPMX19_05780at 503.593 kb on + strand, within MPMX19_05780at 503.593 kb on + strand, within MPMX19_05780at 503.593 kb on + strand, within MPMX19_05780at 503.593 kb on + strand, within MPMX19_05780at 503.593 kb on + strand, within MPMX19_05780at 503.593 kb on + strand, within MPMX19_05780at 503.593 kb on + strand, within MPMX19_05780at 503.593 kb on + strand, within MPMX19_05780at 503.593 kb on + strand, within MPMX19_05780at 503.593 kb on + strand, within MPMX19_05780at 503.593 kb on + strand, within MPMX19_05780at 503.593 kb on + strand, within MPMX19_05780at 503.593 kb on + strand, within MPMX19_05780at 503.593 kb on + strand, within MPMX19_05780at 503.593 kb on + strand, within MPMX19_05780at 503.593 kb on + strand, within MPMX19_05780at 503.593 kb on + strand, within MPMX19_05780at 503.593 kb on + strand, within MPMX19_05780at 503.594 kb on - strand, within MPMX19_05780at 503.594 kb on - strand, within MPMX19_05780at 503.594 kb on - strand, within MPMX19_05780at 503.594 kb on - strand, within MPMX19_05780at 503.594 kb on - strand, within MPMX19_05780at 503.594 kb on - strand, within MPMX19_05780at 503.594 kb on - strand, within MPMX19_05780at 503.594 kb on - strand, within MPMX19_05780at 503.594 kb on - strand, within MPMX19_05780at 503.594 kb on - strand, within MPMX19_05780at 503.743 kb on + strand, within MPMX19_05780at 503.743 kb on + strand, within MPMX19_05780at 503.743 kb on + strand, within MPMX19_05780at 503.743 kb on + strand, within MPMX19_05780at 503.743 kb on + strand, within MPMX19_05780at 503.743 kb on + strand, within MPMX19_05780at 503.743 kb on + strand, within MPMX19_05780at 503.744 kb on - strand, within MPMX19_05780at 503.744 kb on - strand, within MPMX19_05780at 503.744 kb on - strand, within MPMX19_05780at 503.744 kb on - strand, within MPMX19_05780at 503.744 kb on - strand, within MPMX19_05780at 503.744 kb on - strand, within MPMX19_05780at 503.744 kb on - strand, within MPMX19_05780at 503.744 kb on - strand, within MPMX19_05780at 503.744 kb on - strand, within MPMX19_05780at 503.744 kb on - strand, within MPMX19_05780at 503.744 kb on - strand, within MPMX19_05780at 503.744 kb on - strand, within MPMX19_05780at 503.744 kb on - strand, within MPMX19_05780at 503.744 kb on - strand, within MPMX19_05780at 503.744 kb on - strand, within MPMX19_05780at 503.830 kb on + strand, within MPMX19_05780at 503.830 kb on + strand, within MPMX19_05780at 503.830 kb on + strand, within MPMX19_05780at 503.830 kb on + strand, within MPMX19_05780at 503.831 kb on - strand, within MPMX19_05780at 503.881 kb on + strand, within MPMX19_05780at 503.881 kb on + strand, within MPMX19_05780at 503.881 kb on + strand, within MPMX19_05780at 503.882 kb on - strand, within MPMX19_05780at 503.882 kb on - strand, within MPMX19_05780at 504.103 kb on + strand, within MPMX19_05780at 504.103 kb on + strand, within MPMX19_05780at 504.103 kb on + strand, within MPMX19_05780at 504.103 kb on + strand, within MPMX19_05780at 504.132 kb on + strand, within MPMX19_05780at 504.132 kb on + strand, within MPMX19_05780at 504.132 kb on + strand, within MPMX19_05780at 504.132 kb on + strand, within MPMX19_05780at 504.133 kb on - strand, within MPMX19_05780at 504.321 kb on + strandat 504.321 kb on + strandat 504.321 kb on + strandat 504.321 kb on + strandat 504.321 kb on + strandat 504.322 kb on - strandat 504.322 kb on - strandat 504.322 kb on - strandat 504.484 kb on + strand, within MPMX19_05781at 504.484 kb on + strand, within MPMX19_05781at 504.814 kb on + strand, within MPMX19_05781at 504.814 kb on + strand, within MPMX19_05781at 504.814 kb on + strand, within MPMX19_05781at 504.814 kb on + strand, within MPMX19_05781at 504.814 kb on + strand, within MPMX19_05781at 504.814 kb on + strand, within MPMX19_05781at 504.814 kb on + strand, within MPMX19_05781at 504.814 kb on + strand, within MPMX19_05781at 504.814 kb on + strand, within MPMX19_05781at 504.814 kb on + strand, within MPMX19_05781at 504.814 kb on + strand, within MPMX19_05781at 504.814 kb on + strand, within MPMX19_05781at 504.815 kb on - strand, within MPMX19_05781at 504.815 kb on - strand, within MPMX19_05781at 504.815 kb on - strand, within MPMX19_05781at 504.815 kb on - strand, within MPMX19_05781at 504.815 kb on - strand, within MPMX19_05781at 504.815 kb on - strand, within MPMX19_05781at 504.815 kb on - strand, within MPMX19_05781at 504.815 kb on - strand, within MPMX19_05781at 504.815 kb on - strand, within MPMX19_05781at 504.815 kb on - strand, within MPMX19_05781at 504.815 kb on - strand, within MPMX19_05781at 504.815 kb on - strand, within MPMX19_05781at 504.815 kb on - strand, within MPMX19_05781at 504.815 kb on - strand, within MPMX19_05781at 504.815 kb on - strand, within MPMX19_05781at 504.815 kb on - strand, within MPMX19_05781at 504.815 kb on - strand, within MPMX19_05781at 504.815 kb on - strand, within MPMX19_05781at 504.856 kb on + strand, within MPMX19_05781at 504.856 kb on + strand, within MPMX19_05781at 504.856 kb on + strand, within MPMX19_05781at 504.856 kb on + strand, within MPMX19_05781at 504.857 kb on - strand, within MPMX19_05781at 504.857 kb on - strand, within MPMX19_05781at 504.857 kb on - strand, within MPMX19_05781at 504.857 kb on - strand, within MPMX19_05781at 505.029 kb on + strandat 505.030 kb on - strandat 505.068 kb on + strandat 505.069 kb on - strandat 505.069 kb on - strandat 505.069 kb on - strandat 505.069 kb on - strandat 505.069 kb on - strandat 505.114 kb on + strandat 505.115 kb on - strandat 505.149 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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502,378 - MPMX19_05779 0.54 -1.1
502,378 - MPMX19_05779 0.54 -0.2
502,378 - MPMX19_05779 0.54 +0.5
502,378 - MPMX19_05779 0.54 -0.7
502,654 - MPMX19_05779 0.77 -3.6
502,654 - MPMX19_05779 0.77 -1.7
502,654 - MPMX19_05779 0.77 +0.1
502,936 + -0.6
503,062 + -0.5
503,134 + -1.2
503,134 + +0.0
503,134 + +0.2
503,134 + -0.2
503,135 - -0.7
503,135 - -0.9
503,135 - +0.2
503,257 + MPMX19_05780 0.19 -1.1
503,347 + MPMX19_05780 0.26 -0.0
503,440 + MPMX19_05780 0.33 -1.0
503,441 - MPMX19_05780 0.33 +0.3
503,479 + MPMX19_05780 0.36 -0.4
503,479 + MPMX19_05780 0.36 -0.7
503,593 + MPMX19_05780 0.44 -1.2
503,593 + MPMX19_05780 0.44 -1.1
503,593 + MPMX19_05780 0.44 -2.6
503,593 + MPMX19_05780 0.44 -1.0
503,593 + MPMX19_05780 0.44 +0.1
503,593 + MPMX19_05780 0.44 -1.9
503,593 + MPMX19_05780 0.44 -2.1
503,593 + MPMX19_05780 0.44 -0.6
503,593 + MPMX19_05780 0.44 -1.1
503,593 + MPMX19_05780 0.44 -1.4
503,593 + MPMX19_05780 0.44 -1.1
503,593 + MPMX19_05780 0.44 -0.4
503,593 + MPMX19_05780 0.44 +0.1
503,593 + MPMX19_05780 0.44 -0.2
503,593 + MPMX19_05780 0.44 -0.9
503,593 + MPMX19_05780 0.44 -0.1
503,593 + MPMX19_05780 0.44 +0.2
503,593 + MPMX19_05780 0.44 -0.9
503,593 + MPMX19_05780 0.44 -0.4
503,593 + MPMX19_05780 0.44 +0.1
503,593 + MPMX19_05780 0.44 -0.1
503,593 + MPMX19_05780 0.44 +0.1
503,593 + MPMX19_05780 0.44 -1.7
503,594 - MPMX19_05780 0.44 -1.1
503,594 - MPMX19_05780 0.44 -1.4
503,594 - MPMX19_05780 0.44 -1.1
503,594 - MPMX19_05780 0.44 -0.7
503,594 - MPMX19_05780 0.44 -1.8
503,594 - MPMX19_05780 0.44 +1.3
503,594 - MPMX19_05780 0.44 -1.1
503,594 - MPMX19_05780 0.44 +0.9
503,594 - MPMX19_05780 0.44 -0.5
503,594 - MPMX19_05780 0.44 +0.8
503,743 + MPMX19_05780 0.56 -0.4
503,743 + MPMX19_05780 0.56 +0.9
503,743 + MPMX19_05780 0.56 -0.1
503,743 + MPMX19_05780 0.56 -1.1
503,743 + MPMX19_05780 0.56 -0.4
503,743 + MPMX19_05780 0.56 -1.1
503,743 + MPMX19_05780 0.56 -1.5
503,744 - MPMX19_05780 0.56 -1.5
503,744 - MPMX19_05780 0.56 -2.2
503,744 - MPMX19_05780 0.56 -1.1
503,744 - MPMX19_05780 0.56 -1.1
503,744 - MPMX19_05780 0.56 -1.2
503,744 - MPMX19_05780 0.56 -0.5
503,744 - MPMX19_05780 0.56 -0.7
503,744 - MPMX19_05780 0.56 -1.5
503,744 - MPMX19_05780 0.56 -0.5
503,744 - MPMX19_05780 0.56 +0.3
503,744 - MPMX19_05780 0.56 +1.4
503,744 - MPMX19_05780 0.56 -2.1
503,744 - MPMX19_05780 0.56 +0.6
503,744 - MPMX19_05780 0.56 +1.1
503,744 - MPMX19_05780 0.56 -0.1
503,830 + MPMX19_05780 0.62 -1.6
503,830 + MPMX19_05780 0.62 +0.8
503,830 + MPMX19_05780 0.62 +1.1
503,830 + MPMX19_05780 0.62 -1.1
503,831 - MPMX19_05780 0.62 -2.6
503,881 + MPMX19_05780 0.66 -0.6
503,881 + MPMX19_05780 0.66 +1.1
503,881 + MPMX19_05780 0.66 -1.2
503,882 - MPMX19_05780 0.66 -2.1
503,882 - MPMX19_05780 0.66 -0.4
504,103 + MPMX19_05780 0.83 -0.6
504,103 + MPMX19_05780 0.83 -0.8
504,103 + MPMX19_05780 0.83 +0.5
504,103 + MPMX19_05780 0.83 -0.1
504,132 + MPMX19_05780 0.85 -1.4
504,132 + MPMX19_05780 0.85 +0.6
504,132 + MPMX19_05780 0.85 -0.2
504,132 + MPMX19_05780 0.85 -0.6
504,133 - MPMX19_05780 0.85 -0.8
504,321 + +1.9
504,321 + +0.4
504,321 + +0.7
504,321 + -0.1
504,321 + +0.2
504,322 - +0.6
504,322 - -1.1
504,322 - -0.9
504,484 + MPMX19_05781 0.23 -1.0
504,484 + MPMX19_05781 0.23 -0.3
504,814 + MPMX19_05781 0.73 -0.2
504,814 + MPMX19_05781 0.73 +0.1
504,814 + MPMX19_05781 0.73 +0.7
504,814 + MPMX19_05781 0.73 +0.1
504,814 + MPMX19_05781 0.73 -0.9
504,814 + MPMX19_05781 0.73 -0.6
504,814 + MPMX19_05781 0.73 +0.9
504,814 + MPMX19_05781 0.73 -1.3
504,814 + MPMX19_05781 0.73 -0.1
504,814 + MPMX19_05781 0.73 +0.2
504,814 + MPMX19_05781 0.73 +0.2
504,814 + MPMX19_05781 0.73 +0.8
504,815 - MPMX19_05781 0.73 -1.3
504,815 - MPMX19_05781 0.73 -1.2
504,815 - MPMX19_05781 0.73 +0.8
504,815 - MPMX19_05781 0.73 +0.8
504,815 - MPMX19_05781 0.73 +0.1
504,815 - MPMX19_05781 0.73 -1.1
504,815 - MPMX19_05781 0.73 -0.4
504,815 - MPMX19_05781 0.73 -1.9
504,815 - MPMX19_05781 0.73 -0.9
504,815 - MPMX19_05781 0.73 +0.8
504,815 - MPMX19_05781 0.73 -1.2
504,815 - MPMX19_05781 0.73 +0.3
504,815 - MPMX19_05781 0.73 +1.1
504,815 - MPMX19_05781 0.73 +0.7
504,815 - MPMX19_05781 0.73 -2.2
504,815 - MPMX19_05781 0.73 -1.2
504,815 - MPMX19_05781 0.73 -1.7
504,815 - MPMX19_05781 0.73 -0.4
504,856 + MPMX19_05781 0.79 -0.4
504,856 + MPMX19_05781 0.79 -0.5
504,856 + MPMX19_05781 0.79 +0.1
504,856 + MPMX19_05781 0.79 -0.5
504,857 - MPMX19_05781 0.79 -0.7
504,857 - MPMX19_05781 0.79 -1.4
504,857 - MPMX19_05781 0.79 -1.1
504,857 - MPMX19_05781 0.79 -2.1
505,029 + +1.5
505,030 - -0.6
505,068 + -0.1
505,069 - +1.1
505,069 - -1.7
505,069 - +0.1
505,069 - -1.3
505,069 - -0.4
505,114 + -0.8
505,115 - -1.7
505,149 - +0.5

Or see this region's nucleotide sequence