Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05779

Experiment: NL-CCM, start OD=0.3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_05777 and MPMX19_05778 overlap by 8 nucleotidesMPMX19_05778 and MPMX19_05779 overlap by 8 nucleotidesMPMX19_05779 and MPMX19_05780 are separated by 74 nucleotides MPMX19_05777: MPMX19_05777 - 3-hydroxyadipyl-CoA dehydrogenase, at 499,761 to 501,278 _05777 MPMX19_05778: MPMX19_05778 - Acyl-coenzyme A thioesterase PaaI, at 501,271 to 501,729 _05778 MPMX19_05779: MPMX19_05779 - Beta-ketoadipyl-CoA thiolase, at 501,722 to 502,930 _05779 MPMX19_05780: MPMX19_05780 - Phenylacetate-coenzyme A ligase, at 503,005 to 504,330 _05780 Position (kb) 501 502 503Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 500.795 kb on + strand, within MPMX19_05777at 500.886 kb on + strand, within MPMX19_05777at 500.886 kb on + strand, within MPMX19_05777at 500.887 kb on - strand, within MPMX19_05777at 500.887 kb on - strand, within MPMX19_05777at 500.887 kb on - strand, within MPMX19_05777at 501.123 kb on + strand, within MPMX19_05777at 501.124 kb on - strand, within MPMX19_05777at 501.124 kb on - strand, within MPMX19_05777at 501.204 kb on + strandat 501.204 kb on + strandat 501.204 kb on + strandat 501.204 kb on + strandat 501.204 kb on + strandat 501.205 kb on - strandat 501.205 kb on - strandat 501.205 kb on - strandat 501.205 kb on - strandat 501.328 kb on + strand, within MPMX19_05778at 501.328 kb on + strand, within MPMX19_05778at 501.328 kb on + strand, within MPMX19_05778at 501.328 kb on + strand, within MPMX19_05778at 501.328 kb on + strand, within MPMX19_05778at 501.328 kb on + strand, within MPMX19_05778at 501.328 kb on + strand, within MPMX19_05778at 501.328 kb on + strand, within MPMX19_05778at 501.328 kb on + strand, within MPMX19_05778at 501.329 kb on - strand, within MPMX19_05778at 501.329 kb on - strand, within MPMX19_05778at 501.329 kb on - strand, within MPMX19_05778at 501.329 kb on - strand, within MPMX19_05778at 501.329 kb on - strand, within MPMX19_05778at 501.329 kb on - strand, within MPMX19_05778at 501.329 kb on - strand, within MPMX19_05778at 501.329 kb on - strand, within MPMX19_05778at 501.329 kb on - strand, within MPMX19_05778at 501.329 kb on - strand, within MPMX19_05778at 501.329 kb on - strand, within MPMX19_05778at 501.329 kb on - strand, within MPMX19_05778at 501.329 kb on - strand, within MPMX19_05778at 501.329 kb on - strand, within MPMX19_05778at 501.329 kb on - strand, within MPMX19_05778at 501.329 kb on - strand, within MPMX19_05778at 501.329 kb on - strand, within MPMX19_05778at 501.329 kb on - strand, within MPMX19_05778at 501.329 kb on - strand, within MPMX19_05778at 501.329 kb on - strand, within MPMX19_05778at 501.329 kb on - strand, within MPMX19_05778at 501.329 kb on - strand, within MPMX19_05778at 501.329 kb on - strand, within MPMX19_05778at 501.329 kb on - strand, within MPMX19_05778at 501.487 kb on + strand, within MPMX19_05778at 501.487 kb on + strand, within MPMX19_05778at 501.487 kb on + strand, within MPMX19_05778at 501.487 kb on + strand, within MPMX19_05778at 501.487 kb on + strand, within MPMX19_05778at 501.488 kb on - strand, within MPMX19_05778at 501.488 kb on - strand, within MPMX19_05778at 501.488 kb on - strand, within MPMX19_05778at 501.488 kb on - strand, within MPMX19_05778at 501.556 kb on - strand, within MPMX19_05778at 501.619 kb on + strand, within MPMX19_05778at 501.619 kb on + strand, within MPMX19_05778at 501.619 kb on + strand, within MPMX19_05778at 501.619 kb on + strand, within MPMX19_05778at 501.620 kb on - strand, within MPMX19_05778at 501.620 kb on - strand, within MPMX19_05778at 501.620 kb on - strand, within MPMX19_05778at 501.620 kb on - strand, within MPMX19_05778at 501.620 kb on - strand, within MPMX19_05778at 501.734 kb on + strandat 501.734 kb on + strandat 501.734 kb on + strandat 501.734 kb on + strandat 501.734 kb on + strandat 501.735 kb on - strandat 501.735 kb on - strandat 501.735 kb on - strandat 501.735 kb on - strandat 501.735 kb on - strandat 501.735 kb on - strandat 501.735 kb on - strandat 501.735 kb on - strandat 501.735 kb on - strandat 501.735 kb on - strandat 501.735 kb on - strandat 502.378 kb on - strand, within MPMX19_05779at 502.378 kb on - strand, within MPMX19_05779at 502.378 kb on - strand, within MPMX19_05779at 502.378 kb on - strand, within MPMX19_05779at 502.654 kb on - strand, within MPMX19_05779at 502.654 kb on - strand, within MPMX19_05779at 502.654 kb on - strand, within MPMX19_05779at 502.936 kb on + strandat 503.062 kb on + strandat 503.134 kb on + strandat 503.134 kb on + strandat 503.134 kb on + strandat 503.134 kb on + strandat 503.135 kb on - strandat 503.135 kb on - strandat 503.135 kb on - strandat 503.257 kb on + strand, within MPMX19_05780at 503.347 kb on + strand, within MPMX19_05780at 503.440 kb on + strand, within MPMX19_05780at 503.441 kb on - strand, within MPMX19_05780at 503.479 kb on + strand, within MPMX19_05780at 503.479 kb on + strand, within MPMX19_05780at 503.593 kb on + strand, within MPMX19_05780at 503.593 kb on + strand, within MPMX19_05780at 503.593 kb on + strand, within MPMX19_05780at 503.593 kb on + strand, within MPMX19_05780at 503.593 kb on + strand, within MPMX19_05780at 503.593 kb on + strand, within MPMX19_05780at 503.593 kb on + strand, within MPMX19_05780at 503.593 kb on + strand, within MPMX19_05780at 503.593 kb on + strand, within MPMX19_05780at 503.593 kb on + strand, within MPMX19_05780at 503.593 kb on + strand, within MPMX19_05780at 503.593 kb on + strand, within MPMX19_05780at 503.593 kb on + strand, within MPMX19_05780at 503.593 kb on + strand, within MPMX19_05780at 503.593 kb on + strand, within MPMX19_05780at 503.593 kb on + strand, within MPMX19_05780at 503.593 kb on + strand, within MPMX19_05780at 503.593 kb on + strand, within MPMX19_05780at 503.593 kb on + strand, within MPMX19_05780at 503.593 kb on + strand, within MPMX19_05780at 503.593 kb on + strand, within MPMX19_05780at 503.593 kb on + strand, within MPMX19_05780at 503.593 kb on + strand, within MPMX19_05780at 503.594 kb on - strand, within MPMX19_05780at 503.594 kb on - strand, within MPMX19_05780at 503.594 kb on - strand, within MPMX19_05780at 503.594 kb on - strand, within MPMX19_05780at 503.594 kb on - strand, within MPMX19_05780at 503.594 kb on - strand, within MPMX19_05780at 503.594 kb on - strand, within MPMX19_05780at 503.594 kb on - strand, within MPMX19_05780at 503.594 kb on - strand, within MPMX19_05780at 503.594 kb on - strand, within MPMX19_05780at 503.743 kb on + strand, within MPMX19_05780at 503.743 kb on + strand, within MPMX19_05780at 503.743 kb on + strand, within MPMX19_05780at 503.743 kb on + strand, within MPMX19_05780at 503.743 kb on + strand, within MPMX19_05780at 503.743 kb on + strand, within MPMX19_05780at 503.743 kb on + strand, within MPMX19_05780at 503.744 kb on - strand, within MPMX19_05780at 503.744 kb on - strand, within MPMX19_05780at 503.744 kb on - strand, within MPMX19_05780at 503.744 kb on - strand, within MPMX19_05780at 503.744 kb on - strand, within MPMX19_05780at 503.744 kb on - strand, within MPMX19_05780at 503.744 kb on - strand, within MPMX19_05780at 503.744 kb on - strand, within MPMX19_05780at 503.744 kb on - strand, within MPMX19_05780at 503.744 kb on - strand, within MPMX19_05780at 503.744 kb on - strand, within MPMX19_05780at 503.744 kb on - strand, within MPMX19_05780at 503.744 kb on - strand, within MPMX19_05780at 503.744 kb on - strand, within MPMX19_05780at 503.744 kb on - strand, within MPMX19_05780at 503.830 kb on + strand, within MPMX19_05780at 503.830 kb on + strand, within MPMX19_05780at 503.830 kb on + strand, within MPMX19_05780at 503.830 kb on + strand, within MPMX19_05780at 503.831 kb on - strand, within MPMX19_05780at 503.881 kb on + strand, within MPMX19_05780at 503.881 kb on + strand, within MPMX19_05780at 503.881 kb on + strand, within MPMX19_05780at 503.882 kb on - strand, within MPMX19_05780at 503.882 kb on - strand, within MPMX19_05780

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
remove
500,795 + MPMX19_05777 0.68 -1.1
500,886 + MPMX19_05777 0.74 +0.1
500,886 + MPMX19_05777 0.74 -0.2
500,887 - MPMX19_05777 0.74 -0.5
500,887 - MPMX19_05777 0.74 -0.9
500,887 - MPMX19_05777 0.74 -1.1
501,123 + MPMX19_05777 0.90 -1.2
501,124 - MPMX19_05777 0.90 -0.4
501,124 - MPMX19_05777 0.90 +0.9
501,204 + -0.0
501,204 + -0.3
501,204 + -0.7
501,204 + -0.4
501,204 + +0.0
501,205 - +0.4
501,205 - +0.3
501,205 - -1.0
501,205 - -1.1
501,328 + MPMX19_05778 0.12 +1.1
501,328 + MPMX19_05778 0.12 -0.3
501,328 + MPMX19_05778 0.12 -2.5
501,328 + MPMX19_05778 0.12 -1.7
501,328 + MPMX19_05778 0.12 +0.5
501,328 + MPMX19_05778 0.12 -0.3
501,328 + MPMX19_05778 0.12 +1.1
501,328 + MPMX19_05778 0.12 -1.1
501,328 + MPMX19_05778 0.12 -0.7
501,329 - MPMX19_05778 0.13 +0.3
501,329 - MPMX19_05778 0.13 -0.3
501,329 - MPMX19_05778 0.13 -0.2
501,329 - MPMX19_05778 0.13 -1.2
501,329 - MPMX19_05778 0.13 +0.1
501,329 - MPMX19_05778 0.13 -1.5
501,329 - MPMX19_05778 0.13 -3.0
501,329 - MPMX19_05778 0.13 +0.1
501,329 - MPMX19_05778 0.13 -1.1
501,329 - MPMX19_05778 0.13 -0.5
501,329 - MPMX19_05778 0.13 -2.9
501,329 - MPMX19_05778 0.13 +0.4
501,329 - MPMX19_05778 0.13 -1.1
501,329 - MPMX19_05778 0.13 -1.6
501,329 - MPMX19_05778 0.13 +0.5
501,329 - MPMX19_05778 0.13 +0.5
501,329 - MPMX19_05778 0.13 -2.9
501,329 - MPMX19_05778 0.13 -1.6
501,329 - MPMX19_05778 0.13 -1.1
501,329 - MPMX19_05778 0.13 -1.1
501,329 - MPMX19_05778 0.13 -0.7
501,329 - MPMX19_05778 0.13 -0.4
501,329 - MPMX19_05778 0.13 -1.1
501,329 - MPMX19_05778 0.13 -0.2
501,487 + MPMX19_05778 0.47 -0.5
501,487 + MPMX19_05778 0.47 +0.9
501,487 + MPMX19_05778 0.47 -0.6
501,487 + MPMX19_05778 0.47 -0.4
501,487 + MPMX19_05778 0.47 -0.9
501,488 - MPMX19_05778 0.47 -0.5
501,488 - MPMX19_05778 0.47 -0.9
501,488 - MPMX19_05778 0.47 -0.5
501,488 - MPMX19_05778 0.47 -0.8
501,556 - MPMX19_05778 0.62 -0.7
501,619 + MPMX19_05778 0.76 -2.1
501,619 + MPMX19_05778 0.76 -0.2
501,619 + MPMX19_05778 0.76 -1.3
501,619 + MPMX19_05778 0.76 +2.7
501,620 - MPMX19_05778 0.76 -0.4
501,620 - MPMX19_05778 0.76 -0.2
501,620 - MPMX19_05778 0.76 -1.0
501,620 - MPMX19_05778 0.76 -0.9
501,620 - MPMX19_05778 0.76 +0.5
501,734 + -0.6
501,734 + -0.1
501,734 + +0.5
501,734 + -1.1
501,734 + +1.1
501,735 - -1.1
501,735 - +0.4
501,735 - +0.1
501,735 - -0.2
501,735 - -1.0
501,735 - +0.1
501,735 - -0.9
501,735 - -0.7
501,735 - -0.7
501,735 - +0.3
501,735 - +0.6
502,378 - MPMX19_05779 0.54 -1.1
502,378 - MPMX19_05779 0.54 -0.2
502,378 - MPMX19_05779 0.54 +0.5
502,378 - MPMX19_05779 0.54 -0.7
502,654 - MPMX19_05779 0.77 -3.6
502,654 - MPMX19_05779 0.77 -1.7
502,654 - MPMX19_05779 0.77 +0.1
502,936 + -0.6
503,062 + -0.5
503,134 + -1.2
503,134 + +0.0
503,134 + +0.2
503,134 + -0.2
503,135 - -0.7
503,135 - -0.9
503,135 - +0.2
503,257 + MPMX19_05780 0.19 -1.1
503,347 + MPMX19_05780 0.26 -0.0
503,440 + MPMX19_05780 0.33 -1.0
503,441 - MPMX19_05780 0.33 +0.3
503,479 + MPMX19_05780 0.36 -0.4
503,479 + MPMX19_05780 0.36 -0.7
503,593 + MPMX19_05780 0.44 -1.2
503,593 + MPMX19_05780 0.44 -1.1
503,593 + MPMX19_05780 0.44 -2.6
503,593 + MPMX19_05780 0.44 -1.0
503,593 + MPMX19_05780 0.44 +0.1
503,593 + MPMX19_05780 0.44 -1.9
503,593 + MPMX19_05780 0.44 -2.1
503,593 + MPMX19_05780 0.44 -0.6
503,593 + MPMX19_05780 0.44 -1.1
503,593 + MPMX19_05780 0.44 -1.4
503,593 + MPMX19_05780 0.44 -1.1
503,593 + MPMX19_05780 0.44 -0.4
503,593 + MPMX19_05780 0.44 +0.1
503,593 + MPMX19_05780 0.44 -0.2
503,593 + MPMX19_05780 0.44 -0.9
503,593 + MPMX19_05780 0.44 -0.1
503,593 + MPMX19_05780 0.44 +0.2
503,593 + MPMX19_05780 0.44 -0.9
503,593 + MPMX19_05780 0.44 -0.4
503,593 + MPMX19_05780 0.44 +0.1
503,593 + MPMX19_05780 0.44 -0.1
503,593 + MPMX19_05780 0.44 +0.1
503,593 + MPMX19_05780 0.44 -1.7
503,594 - MPMX19_05780 0.44 -1.1
503,594 - MPMX19_05780 0.44 -1.4
503,594 - MPMX19_05780 0.44 -1.1
503,594 - MPMX19_05780 0.44 -0.7
503,594 - MPMX19_05780 0.44 -1.8
503,594 - MPMX19_05780 0.44 +1.3
503,594 - MPMX19_05780 0.44 -1.1
503,594 - MPMX19_05780 0.44 +0.9
503,594 - MPMX19_05780 0.44 -0.5
503,594 - MPMX19_05780 0.44 +0.8
503,743 + MPMX19_05780 0.56 -0.4
503,743 + MPMX19_05780 0.56 +0.9
503,743 + MPMX19_05780 0.56 -0.1
503,743 + MPMX19_05780 0.56 -1.1
503,743 + MPMX19_05780 0.56 -0.4
503,743 + MPMX19_05780 0.56 -1.1
503,743 + MPMX19_05780 0.56 -1.5
503,744 - MPMX19_05780 0.56 -1.5
503,744 - MPMX19_05780 0.56 -2.2
503,744 - MPMX19_05780 0.56 -1.1
503,744 - MPMX19_05780 0.56 -1.1
503,744 - MPMX19_05780 0.56 -1.2
503,744 - MPMX19_05780 0.56 -0.5
503,744 - MPMX19_05780 0.56 -0.7
503,744 - MPMX19_05780 0.56 -1.5
503,744 - MPMX19_05780 0.56 -0.5
503,744 - MPMX19_05780 0.56 +0.3
503,744 - MPMX19_05780 0.56 +1.4
503,744 - MPMX19_05780 0.56 -2.1
503,744 - MPMX19_05780 0.56 +0.6
503,744 - MPMX19_05780 0.56 +1.1
503,744 - MPMX19_05780 0.56 -0.1
503,830 + MPMX19_05780 0.62 -1.6
503,830 + MPMX19_05780 0.62 +0.8
503,830 + MPMX19_05780 0.62 +1.1
503,830 + MPMX19_05780 0.62 -1.1
503,831 - MPMX19_05780 0.62 -2.6
503,881 + MPMX19_05780 0.66 -0.6
503,881 + MPMX19_05780 0.66 +1.1
503,881 + MPMX19_05780 0.66 -1.2
503,882 - MPMX19_05780 0.66 -2.1
503,882 - MPMX19_05780 0.66 -0.4

Or see this region's nucleotide sequence