Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05767 and MPMX19_05768 are separated by 101 nucleotides MPMX19_05768 and MPMX19_05769 are separated by 428 nucleotides MPMX19_05769 and MPMX19_05770 are separated by 470 nucleotides
MPMX19_05767: MPMX19_05767 - Sensor histidine kinase RcsC, at 489,306 to 491,660
_05767
MPMX19_05768: MPMX19_05768 - hypothetical protein, at 491,762 to 492,007
_05768
MPMX19_05769: MPMX19_05769 - hypothetical protein, at 492,436 to 493,035
_05769
MPMX19_05770: MPMX19_05770 - 1,2-phenylacetyl-CoA epoxidase, subunit A, at 493,506 to 494,519
_05770
Position (kb) 492
493
494 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 491.602 kb on + strand at 491.813 kb on + strand, within MPMX19_05768 at 491.813 kb on + strand, within MPMX19_05768 at 491.813 kb on + strand, within MPMX19_05768 at 491.813 kb on + strand, within MPMX19_05768 at 491.813 kb on + strand, within MPMX19_05768 at 491.814 kb on - strand, within MPMX19_05768 at 491.814 kb on - strand, within MPMX19_05768 at 491.920 kb on + strand, within MPMX19_05768 at 491.920 kb on + strand, within MPMX19_05768 at 491.921 kb on - strand, within MPMX19_05768 at 491.921 kb on - strand, within MPMX19_05768 at 491.921 kb on - strand, within MPMX19_05768 at 492.057 kb on - strand at 492.071 kb on - strand at 492.120 kb on + strand at 492.120 kb on + strand at 492.121 kb on - strand at 492.121 kb on - strand at 492.133 kb on - strand at 492.137 kb on + strand at 492.137 kb on + strand at 492.137 kb on + strand at 492.137 kb on + strand at 492.137 kb on + strand at 492.137 kb on + strand at 492.137 kb on + strand at 492.137 kb on + strand at 492.138 kb on - strand at 492.138 kb on - strand at 492.138 kb on - strand at 492.138 kb on - strand at 492.138 kb on - strand at 492.138 kb on - strand at 492.138 kb on - strand at 492.138 kb on - strand at 492.138 kb on - strand at 492.138 kb on - strand at 492.167 kb on - strand at 492.225 kb on + strand at 492.226 kb on - strand at 492.226 kb on - strand at 492.228 kb on + strand at 492.228 kb on + strand at 492.229 kb on - strand at 492.303 kb on + strand at 492.304 kb on - strand at 492.316 kb on + strand at 492.317 kb on - strand at 492.317 kb on - strand at 492.317 kb on - strand at 492.317 kb on - strand at 492.346 kb on + strand at 492.346 kb on + strand at 492.347 kb on - strand at 492.347 kb on - strand at 492.351 kb on + strand at 492.529 kb on + strand, within MPMX19_05769 at 492.529 kb on + strand, within MPMX19_05769 at 492.529 kb on + strand, within MPMX19_05769 at 492.529 kb on + strand, within MPMX19_05769 at 492.529 kb on + strand, within MPMX19_05769 at 492.529 kb on + strand, within MPMX19_05769 at 492.529 kb on + strand, within MPMX19_05769 at 492.529 kb on + strand, within MPMX19_05769 at 492.529 kb on + strand, within MPMX19_05769 at 492.529 kb on + strand, within MPMX19_05769 at 492.529 kb on + strand, within MPMX19_05769 at 492.529 kb on + strand, within MPMX19_05769 at 492.530 kb on - strand, within MPMX19_05769 at 492.530 kb on - strand, within MPMX19_05769 at 492.530 kb on - strand, within MPMX19_05769 at 492.530 kb on - strand, within MPMX19_05769 at 492.530 kb on - strand, within MPMX19_05769 at 492.530 kb on - strand, within MPMX19_05769 at 492.530 kb on - strand, within MPMX19_05769 at 492.530 kb on - strand, within MPMX19_05769 at 492.530 kb on - strand, within MPMX19_05769 at 492.530 kb on - strand, within MPMX19_05769 at 492.530 kb on - strand, within MPMX19_05769 at 492.530 kb on - strand, within MPMX19_05769 at 492.973 kb on + strand, within MPMX19_05769 at 492.973 kb on + strand, within MPMX19_05769 at 492.973 kb on + strand, within MPMX19_05769 at 492.973 kb on + strand, within MPMX19_05769 at 492.973 kb on + strand, within MPMX19_05769 at 492.973 kb on + strand, within MPMX19_05769 at 492.973 kb on + strand, within MPMX19_05769 at 492.973 kb on + strand, within MPMX19_05769 at 492.973 kb on + strand, within MPMX19_05769 at 492.973 kb on + strand, within MPMX19_05769 at 492.973 kb on + strand, within MPMX19_05769 at 492.973 kb on + strand, within MPMX19_05769 at 492.973 kb on + strand, within MPMX19_05769 at 492.973 kb on + strand, within MPMX19_05769 at 492.973 kb on + strand, within MPMX19_05769 at 492.973 kb on + strand, within MPMX19_05769 at 492.973 kb on + strand, within MPMX19_05769 at 492.974 kb on - strand, within MPMX19_05769 at 492.974 kb on - strand, within MPMX19_05769 at 492.974 kb on - strand, within MPMX19_05769 at 492.974 kb on - strand, within MPMX19_05769 at 492.974 kb on - strand, within MPMX19_05769 at 492.974 kb on - strand, within MPMX19_05769 at 492.974 kb on - strand, within MPMX19_05769 at 492.974 kb on - strand, within MPMX19_05769 at 492.974 kb on - strand, within MPMX19_05769 at 492.974 kb on - strand, within MPMX19_05769 at 492.974 kb on - strand, within MPMX19_05769 at 492.974 kb on - strand, within MPMX19_05769 at 492.974 kb on - strand, within MPMX19_05769 at 493.226 kb on + strand at 493.227 kb on - strand at 493.452 kb on + strand at 493.509 kb on + strand at 493.509 kb on + strand at 493.509 kb on + strand at 493.509 kb on + strand at 493.509 kb on + strand at 493.509 kb on + strand at 493.509 kb on + strand at 493.509 kb on + strand at 493.509 kb on + strand at 493.509 kb on + strand at 493.509 kb on + strand at 493.509 kb on + strand at 493.509 kb on + strand at 493.509 kb on + strand at 493.510 kb on - strand at 493.510 kb on - strand at 493.510 kb on - strand at 493.510 kb on - strand at 493.510 kb on - strand at 493.510 kb on - strand at 493.510 kb on - strand at 493.510 kb on - strand at 493.510 kb on - strand at 493.510 kb on - strand at 493.510 kb on - strand at 493.510 kb on - strand at 493.510 kb on - strand at 493.812 kb on + strand, within MPMX19_05770 at 493.812 kb on + strand, within MPMX19_05770 at 493.812 kb on + strand, within MPMX19_05770 at 493.812 kb on + strand, within MPMX19_05770 at 493.812 kb on + strand, within MPMX19_05770 at 493.812 kb on + strand, within MPMX19_05770 at 493.813 kb on - strand, within MPMX19_05770 at 493.813 kb on - strand, within MPMX19_05770 at 493.813 kb on - strand, within MPMX19_05770 at 493.813 kb on - strand, within MPMX19_05770 at 493.813 kb on - strand, within MPMX19_05770 at 493.813 kb on - strand, within MPMX19_05770 at 493.813 kb on - strand, within MPMX19_05770 at 493.813 kb on - strand, within MPMX19_05770 at 493.813 kb on - strand, within MPMX19_05770 at 493.818 kb on + strand, within MPMX19_05770 at 493.818 kb on + strand, within MPMX19_05770 at 493.819 kb on - strand, within MPMX19_05770 at 493.819 kb on - strand, within MPMX19_05770 at 493.819 kb on - strand, within MPMX19_05770 at 493.890 kb on + strand, within MPMX19_05770 at 493.890 kb on + strand, within MPMX19_05770 at 493.890 kb on + strand, within MPMX19_05770 at 493.891 kb on - strand, within MPMX19_05770 at 493.908 kb on + strand, within MPMX19_05770 at 493.908 kb on + strand, within MPMX19_05770 at 493.908 kb on + strand, within MPMX19_05770 at 493.909 kb on - strand, within MPMX19_05770 at 494.001 kb on + strand, within MPMX19_05770 at 494.001 kb on + strand, within MPMX19_05770 at 494.001 kb on + strand, within MPMX19_05770 at 494.001 kb on + strand, within MPMX19_05770 at 494.001 kb on + strand, within MPMX19_05770 at 494.001 kb on + strand, within MPMX19_05770 at 494.002 kb on - strand, within MPMX19_05770 at 494.010 kb on + strand, within MPMX19_05770 at 494.010 kb on + strand, within MPMX19_05770 at 494.010 kb on + strand, within MPMX19_05770 at 494.010 kb on + strand, within MPMX19_05770 at 494.010 kb on + strand, within MPMX19_05770 at 494.010 kb on + strand, within MPMX19_05770 at 494.011 kb on - strand, within MPMX19_05770 at 494.011 kb on - strand, within MPMX19_05770 at 494.011 kb on - strand, within MPMX19_05770 at 494.011 kb on - strand, within MPMX19_05770 at 494.011 kb on - strand, within MPMX19_05770 at 494.011 kb on - strand, within MPMX19_05770 at 494.011 kb on - strand, within MPMX19_05770 at 494.011 kb on - strand, within MPMX19_05770 at 494.011 kb on - strand, within MPMX19_05770
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 491,602 + -3.1 491,813 + MPMX19_05768 0.21 +0.9 491,813 + MPMX19_05768 0.21 +0.1 491,813 + MPMX19_05768 0.21 -0.1 491,813 + MPMX19_05768 0.21 -1.7 491,813 + MPMX19_05768 0.21 -1.4 491,814 - MPMX19_05768 0.21 -2.2 491,814 - MPMX19_05768 0.21 -2.5 491,920 + MPMX19_05768 0.64 -0.6 491,920 + MPMX19_05768 0.64 -0.9 491,921 - MPMX19_05768 0.65 +0.5 491,921 - MPMX19_05768 0.65 +0.2 491,921 - MPMX19_05768 0.65 -0.8 492,057 - -0.9 492,071 - -0.2 492,120 + -0.4 492,120 + +1.4 492,121 - -0.2 492,121 - +0.3 492,133 - -0.6 492,137 + -1.2 492,137 + +0.7 492,137 + -0.7 492,137 + -0.1 492,137 + -0.4 492,137 + -0.8 492,137 + -0.5 492,137 + -1.4 492,138 - -0.2 492,138 - -0.3 492,138 - -0.9 492,138 - -0.5 492,138 - -1.5 492,138 - +0.8 492,138 - -0.5 492,138 - +0.4 492,138 - +1.5 492,138 - -0.5 492,167 - -0.5 492,225 + -0.3 492,226 - +0.8 492,226 - -1.9 492,228 + +0.2 492,228 + -1.2 492,229 - -0.5 492,303 + +0.2 492,304 - -2.4 492,316 + -0.6 492,317 - -2.5 492,317 - +0.1 492,317 - -1.1 492,317 - -0.1 492,346 + -2.1 492,346 + -1.8 492,347 - -0.5 492,347 - -0.1 492,351 + -0.4 492,529 + MPMX19_05769 0.15 -0.8 492,529 + MPMX19_05769 0.15 -0.2 492,529 + MPMX19_05769 0.15 -0.5 492,529 + MPMX19_05769 0.15 -0.5 492,529 + MPMX19_05769 0.15 +0.4 492,529 + MPMX19_05769 0.15 -2.4 492,529 + MPMX19_05769 0.15 +0.1 492,529 + MPMX19_05769 0.15 -0.1 492,529 + MPMX19_05769 0.15 +0.5 492,529 + MPMX19_05769 0.15 +0.5 492,529 + MPMX19_05769 0.15 -1.4 492,529 + MPMX19_05769 0.15 -0.3 492,530 - MPMX19_05769 0.16 -1.6 492,530 - MPMX19_05769 0.16 -0.1 492,530 - MPMX19_05769 0.16 -0.9 492,530 - MPMX19_05769 0.16 +1.1 492,530 - MPMX19_05769 0.16 -1.9 492,530 - MPMX19_05769 0.16 -0.0 492,530 - MPMX19_05769 0.16 -0.5 492,530 - MPMX19_05769 0.16 -0.1 492,530 - MPMX19_05769 0.16 -2.7 492,530 - MPMX19_05769 0.16 -2.4 492,530 - MPMX19_05769 0.16 -1.5 492,530 - MPMX19_05769 0.16 -0.9 492,973 + MPMX19_05769 0.90 -1.1 492,973 + MPMX19_05769 0.90 -1.4 492,973 + MPMX19_05769 0.90 -1.5 492,973 + MPMX19_05769 0.90 -0.2 492,973 + MPMX19_05769 0.90 -1.8 492,973 + MPMX19_05769 0.90 -0.4 492,973 + MPMX19_05769 0.90 -1.5 492,973 + MPMX19_05769 0.90 -0.4 492,973 + MPMX19_05769 0.90 -1.8 492,973 + MPMX19_05769 0.90 -0.2 492,973 + MPMX19_05769 0.90 -0.1 492,973 + MPMX19_05769 0.90 -1.0 492,973 + MPMX19_05769 0.90 -0.8 492,973 + MPMX19_05769 0.90 +1.2 492,973 + MPMX19_05769 0.90 -0.6 492,973 + MPMX19_05769 0.90 -0.6 492,973 + MPMX19_05769 0.90 -1.1 492,974 - MPMX19_05769 0.90 +0.8 492,974 - MPMX19_05769 0.90 -0.8 492,974 - MPMX19_05769 0.90 -0.2 492,974 - MPMX19_05769 0.90 -0.4 492,974 - MPMX19_05769 0.90 -0.7 492,974 - MPMX19_05769 0.90 +0.9 492,974 - MPMX19_05769 0.90 -2.3 492,974 - MPMX19_05769 0.90 -1.8 492,974 - MPMX19_05769 0.90 -1.2 492,974 - MPMX19_05769 0.90 -1.9 492,974 - MPMX19_05769 0.90 -2.3 492,974 - MPMX19_05769 0.90 -2.2 492,974 - MPMX19_05769 0.90 -0.6 493,226 + +0.3 493,227 - -0.8 493,452 + -1.8 493,509 + -0.8 493,509 + -1.4 493,509 + -0.1 493,509 + -0.9 493,509 + -0.5 493,509 + +0.5 493,509 + -0.4 493,509 + -0.6 493,509 + -0.3 493,509 + -0.8 493,509 + -0.9 493,509 + +0.1 493,509 + -0.5 493,509 + -1.1 493,510 - +1.1 493,510 - -0.1 493,510 - -1.3 493,510 - +0.3 493,510 - -0.6 493,510 - -1.6 493,510 - -0.6 493,510 - -0.4 493,510 - +0.1 493,510 - -0.7 493,510 - -1.1 493,510 - +0.7 493,510 - +0.7 493,812 + MPMX19_05770 0.30 -0.5 493,812 + MPMX19_05770 0.30 -1.1 493,812 + MPMX19_05770 0.30 -0.9 493,812 + MPMX19_05770 0.30 -0.5 493,812 + MPMX19_05770 0.30 -1.6 493,812 + MPMX19_05770 0.30 -0.8 493,813 - MPMX19_05770 0.30 -0.1 493,813 - MPMX19_05770 0.30 -0.5 493,813 - MPMX19_05770 0.30 -0.2 493,813 - MPMX19_05770 0.30 -1.1 493,813 - MPMX19_05770 0.30 -0.7 493,813 - MPMX19_05770 0.30 -0.9 493,813 - MPMX19_05770 0.30 +0.8 493,813 - MPMX19_05770 0.30 -2.1 493,813 - MPMX19_05770 0.30 +1.2 493,818 + MPMX19_05770 0.31 +0.4 493,818 + MPMX19_05770 0.31 -0.6 493,819 - MPMX19_05770 0.31 -0.9 493,819 - MPMX19_05770 0.31 +0.4 493,819 - MPMX19_05770 0.31 -1.3 493,890 + MPMX19_05770 0.38 +0.1 493,890 + MPMX19_05770 0.38 -0.9 493,890 + MPMX19_05770 0.38 +1.0 493,891 - MPMX19_05770 0.38 -0.7 493,908 + MPMX19_05770 0.40 -0.8 493,908 + MPMX19_05770 0.40 -0.1 493,908 + MPMX19_05770 0.40 +0.7 493,909 - MPMX19_05770 0.40 -2.9 494,001 + MPMX19_05770 0.49 -0.1 494,001 + MPMX19_05770 0.49 -1.4 494,001 + MPMX19_05770 0.49 -0.1 494,001 + MPMX19_05770 0.49 -1.4 494,001 + MPMX19_05770 0.49 -0.2 494,001 + MPMX19_05770 0.49 -0.7 494,002 - MPMX19_05770 0.49 -0.2 494,010 + MPMX19_05770 0.50 +0.4 494,010 + MPMX19_05770 0.50 -0.4 494,010 + MPMX19_05770 0.50 -1.1 494,010 + MPMX19_05770 0.50 +0.3 494,010 + MPMX19_05770 0.50 -0.1 494,010 + MPMX19_05770 0.50 -1.7 494,011 - MPMX19_05770 0.50 +1.1 494,011 - MPMX19_05770 0.50 -0.4 494,011 - MPMX19_05770 0.50 -0.4 494,011 - MPMX19_05770 0.50 -0.2 494,011 - MPMX19_05770 0.50 -2.0 494,011 - MPMX19_05770 0.50 -0.1 494,011 - MPMX19_05770 0.50 +1.0 494,011 - MPMX19_05770 0.50 -1.8 494,011 - MPMX19_05770 0.50 -0.5
Or see this region's nucleotide sequence