Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05735 and MPMX19_05736 are separated by 76 nucleotides MPMX19_05736 and MPMX19_05737 overlap by 4 nucleotides MPMX19_05737 and MPMX19_05738 overlap by 38 nucleotides MPMX19_05738 and MPMX19_05739 are separated by 16 nucleotides
MPMX19_05735: MPMX19_05735 - hypothetical protein, at 453,173 to 453,427
_05735
MPMX19_05736: MPMX19_05736 - hypothetical protein, at 453,504 to 454,274
_05736
MPMX19_05737: MPMX19_05737 - hypothetical protein, at 454,271 to 454,717
_05737
MPMX19_05738: MPMX19_05738 - hypothetical protein, at 454,680 to 455,207
_05738
MPMX19_05739: MPMX19_05739 - Tuberculostearic acid methyltransferase UfaA1, at 455,224 to 456,486
_05739
Position (kb) 454
455 Strain fitness (log2 ratio) -2
-1
0
1
2 at 453.450 kb on - strand at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.851 kb on + strand, within MPMX19_05736 at 453.851 kb on + strand, within MPMX19_05736 at 453.851 kb on + strand, within MPMX19_05736 at 453.852 kb on - strand, within MPMX19_05736 at 453.852 kb on - strand, within MPMX19_05736 at 453.852 kb on - strand, within MPMX19_05736 at 453.852 kb on - strand, within MPMX19_05736 at 453.852 kb on - strand, within MPMX19_05736 at 453.852 kb on - strand, within MPMX19_05736 at 453.852 kb on - strand, within MPMX19_05736 at 453.852 kb on - strand, within MPMX19_05736 at 453.852 kb on - strand, within MPMX19_05736 at 453.969 kb on + strand, within MPMX19_05736 at 453.969 kb on + strand, within MPMX19_05736 at 453.969 kb on + strand, within MPMX19_05736 at 453.970 kb on - strand, within MPMX19_05736 at 454.239 kb on + strand at 454.239 kb on + strand at 454.239 kb on + strand at 454.239 kb on + strand at 454.239 kb on + strand at 454.239 kb on + strand at 454.239 kb on + strand at 454.240 kb on - strand at 454.240 kb on - strand at 454.240 kb on - strand at 454.240 kb on - strand at 454.240 kb on - strand at 454.240 kb on - strand at 454.643 kb on + strand, within MPMX19_05737 at 454.643 kb on + strand, within MPMX19_05737 at 454.643 kb on + strand, within MPMX19_05737 at 454.643 kb on + strand, within MPMX19_05737 at 454.643 kb on + strand, within MPMX19_05737 at 454.643 kb on + strand, within MPMX19_05737 at 454.644 kb on - strand, within MPMX19_05737 at 454.644 kb on - strand, within MPMX19_05737 at 454.644 kb on - strand, within MPMX19_05737 at 454.644 kb on - strand, within MPMX19_05737 at 454.644 kb on - strand, within MPMX19_05737 at 454.644 kb on - strand, within MPMX19_05737 at 454.644 kb on - strand, within MPMX19_05737 at 454.644 kb on - strand, within MPMX19_05737 at 454.644 kb on - strand, within MPMX19_05737 at 454.644 kb on - strand, within MPMX19_05737 at 454.644 kb on - strand, within MPMX19_05737 at 454.644 kb on - strand, within MPMX19_05737 at 454.681 kb on + strand at 454.681 kb on + strand at 454.682 kb on - strand at 454.682 kb on - strand at 454.682 kb on - strand at 454.682 kb on - strand at 454.792 kb on + strand, within MPMX19_05738 at 454.793 kb on - strand, within MPMX19_05738 at 454.793 kb on - strand, within MPMX19_05738 at 454.894 kb on + strand, within MPMX19_05738 at 454.894 kb on + strand, within MPMX19_05738 at 454.894 kb on + strand, within MPMX19_05738 at 454.894 kb on + strand, within MPMX19_05738 at 454.894 kb on + strand, within MPMX19_05738 at 454.894 kb on + strand, within MPMX19_05738 at 454.894 kb on + strand, within MPMX19_05738 at 454.894 kb on + strand, within MPMX19_05738 at 454.894 kb on + strand, within MPMX19_05738 at 454.894 kb on + strand, within MPMX19_05738 at 454.894 kb on + strand, within MPMX19_05738 at 454.895 kb on - strand, within MPMX19_05738 at 454.895 kb on - strand, within MPMX19_05738 at 454.895 kb on - strand, within MPMX19_05738 at 454.895 kb on - strand, within MPMX19_05738 at 454.895 kb on - strand, within MPMX19_05738 at 454.895 kb on - strand, within MPMX19_05738 at 454.895 kb on - strand, within MPMX19_05738 at 454.895 kb on - strand, within MPMX19_05738 at 454.895 kb on - strand, within MPMX19_05738 at 454.895 kb on - strand, within MPMX19_05738 at 454.966 kb on + strand, within MPMX19_05738 at 454.966 kb on + strand, within MPMX19_05738 at 454.966 kb on + strand, within MPMX19_05738 at 454.966 kb on + strand, within MPMX19_05738 at 454.966 kb on + strand, within MPMX19_05738 at 454.966 kb on + strand, within MPMX19_05738 at 454.967 kb on - strand, within MPMX19_05738 at 454.967 kb on - strand, within MPMX19_05738 at 454.967 kb on - strand, within MPMX19_05738 at 454.967 kb on - strand, within MPMX19_05738 at 455.027 kb on - strand, within MPMX19_05738 at 455.155 kb on + strand at 455.155 kb on + strand at 455.156 kb on - strand at 455.156 kb on - strand at 455.156 kb on - strand at 455.156 kb on - strand at 455.288 kb on + strand at 455.288 kb on + strand at 455.288 kb on + strand at 455.288 kb on + strand at 455.297 kb on + strand at 455.297 kb on + strand at 455.297 kb on + strand at 455.297 kb on + strand at 455.297 kb on + strand at 455.297 kb on + strand at 455.297 kb on + strand at 455.297 kb on + strand at 455.297 kb on + strand at 455.297 kb on + strand at 455.297 kb on + strand at 455.297 kb on + strand at 455.297 kb on + strand at 455.297 kb on + strand at 455.297 kb on + strand at 455.297 kb on + strand at 455.298 kb on - strand at 455.298 kb on - strand at 455.298 kb on - strand at 455.298 kb on - strand at 455.298 kb on - strand at 455.298 kb on - strand at 455.298 kb on - strand at 455.298 kb on - strand at 455.298 kb on - strand at 455.300 kb on + strand at 455.300 kb on + strand at 455.300 kb on + strand at 455.300 kb on + strand at 455.301 kb on - strand at 455.301 kb on - strand at 455.399 kb on + strand, within MPMX19_05739 at 455.399 kb on + strand, within MPMX19_05739 at 455.399 kb on + strand, within MPMX19_05739 at 455.399 kb on + strand, within MPMX19_05739 at 455.399 kb on + strand, within MPMX19_05739 at 455.400 kb on - strand, within MPMX19_05739 at 455.400 kb on - strand, within MPMX19_05739 at 455.400 kb on - strand, within MPMX19_05739 at 455.400 kb on - strand, within MPMX19_05739 at 455.400 kb on - strand, within MPMX19_05739 at 455.400 kb on - strand, within MPMX19_05739 at 455.400 kb on - strand, within MPMX19_05739 at 455.532 kb on - strand, within MPMX19_05739 at 455.532 kb on - strand, within MPMX19_05739 at 455.532 kb on - strand, within MPMX19_05739 at 455.618 kb on + strand, within MPMX19_05739 at 455.618 kb on + strand, within MPMX19_05739 at 455.619 kb on - strand, within MPMX19_05739 at 455.619 kb on - strand, within MPMX19_05739
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 453,450 - -0.5 453,849 + MPMX19_05736 0.45 -2.6 453,849 + MPMX19_05736 0.45 +0.3 453,849 + MPMX19_05736 0.45 -0.7 453,849 + MPMX19_05736 0.45 +0.4 453,849 + MPMX19_05736 0.45 -1.1 453,849 + MPMX19_05736 0.45 +0.5 453,849 + MPMX19_05736 0.45 +1.7 453,849 + MPMX19_05736 0.45 -0.4 453,849 + MPMX19_05736 0.45 +0.0 453,849 + MPMX19_05736 0.45 -0.5 453,849 + MPMX19_05736 0.45 +0.3 453,849 + MPMX19_05736 0.45 -0.8 453,849 + MPMX19_05736 0.45 -0.8 453,849 + MPMX19_05736 0.45 -1.1 453,849 + MPMX19_05736 0.45 +0.3 453,849 + MPMX19_05736 0.45 -1.1 453,849 + MPMX19_05736 0.45 -1.5 453,849 + MPMX19_05736 0.45 -0.9 453,849 + MPMX19_05736 0.45 -0.1 453,849 + MPMX19_05736 0.45 +1.1 453,849 + MPMX19_05736 0.45 +0.8 453,849 + MPMX19_05736 0.45 -0.5 453,849 + MPMX19_05736 0.45 -1.5 453,849 + MPMX19_05736 0.45 -0.2 453,849 + MPMX19_05736 0.45 +0.5 453,849 + MPMX19_05736 0.45 -1.6 453,849 + MPMX19_05736 0.45 -0.2 453,849 + MPMX19_05736 0.45 -0.9 453,849 + MPMX19_05736 0.45 -0.4 453,849 + MPMX19_05736 0.45 -0.0 453,849 + MPMX19_05736 0.45 -1.4 453,849 + MPMX19_05736 0.45 +2.1 453,849 + MPMX19_05736 0.45 -0.8 453,849 + MPMX19_05736 0.45 +0.8 453,849 + MPMX19_05736 0.45 -0.9 453,849 + MPMX19_05736 0.45 +0.6 453,849 + MPMX19_05736 0.45 +0.4 453,849 + MPMX19_05736 0.45 -0.2 453,849 + MPMX19_05736 0.45 +0.1 453,849 + MPMX19_05736 0.45 -0.0 453,850 - MPMX19_05736 0.45 -0.1 453,850 - MPMX19_05736 0.45 +1.4 453,850 - MPMX19_05736 0.45 +0.9 453,850 - MPMX19_05736 0.45 -0.5 453,850 - MPMX19_05736 0.45 +0.4 453,850 - MPMX19_05736 0.45 -0.2 453,850 - MPMX19_05736 0.45 -0.7 453,850 - MPMX19_05736 0.45 -0.0 453,850 - MPMX19_05736 0.45 +0.1 453,850 - MPMX19_05736 0.45 +0.3 453,850 - MPMX19_05736 0.45 +0.3 453,850 - MPMX19_05736 0.45 +0.1 453,850 - MPMX19_05736 0.45 -0.8 453,850 - MPMX19_05736 0.45 -0.4 453,850 - MPMX19_05736 0.45 -0.0 453,850 - MPMX19_05736 0.45 -0.8 453,850 - MPMX19_05736 0.45 +0.9 453,850 - MPMX19_05736 0.45 -1.5 453,850 - MPMX19_05736 0.45 -1.5 453,850 - MPMX19_05736 0.45 +0.0 453,850 - MPMX19_05736 0.45 +0.8 453,850 - MPMX19_05736 0.45 -1.5 453,850 - MPMX19_05736 0.45 -2.0 453,850 - MPMX19_05736 0.45 -1.1 453,850 - MPMX19_05736 0.45 -0.9 453,850 - MPMX19_05736 0.45 -1.9 453,850 - MPMX19_05736 0.45 -0.0 453,850 - MPMX19_05736 0.45 -0.1 453,850 - MPMX19_05736 0.45 -0.9 453,850 - MPMX19_05736 0.45 -0.9 453,850 - MPMX19_05736 0.45 +0.5 453,850 - MPMX19_05736 0.45 -0.3 453,850 - MPMX19_05736 0.45 +0.1 453,850 - MPMX19_05736 0.45 +0.4 453,850 - MPMX19_05736 0.45 -0.6 453,850 - MPMX19_05736 0.45 -0.3 453,850 - MPMX19_05736 0.45 -1.4 453,850 - MPMX19_05736 0.45 +0.3 453,850 - MPMX19_05736 0.45 +0.3 453,850 - MPMX19_05736 0.45 +0.5 453,850 - MPMX19_05736 0.45 -0.2 453,850 - MPMX19_05736 0.45 -0.7 453,850 - MPMX19_05736 0.45 -0.2 453,851 + MPMX19_05736 0.45 -0.9 453,851 + MPMX19_05736 0.45 -1.1 453,851 + MPMX19_05736 0.45 -0.5 453,852 - MPMX19_05736 0.45 +0.3 453,852 - MPMX19_05736 0.45 +1.1 453,852 - MPMX19_05736 0.45 -0.7 453,852 - MPMX19_05736 0.45 +0.4 453,852 - MPMX19_05736 0.45 +0.1 453,852 - MPMX19_05736 0.45 -1.1 453,852 - MPMX19_05736 0.45 -0.4 453,852 - MPMX19_05736 0.45 -0.5 453,852 - MPMX19_05736 0.45 -0.7 453,969 + MPMX19_05736 0.60 -0.6 453,969 + MPMX19_05736 0.60 -0.4 453,969 + MPMX19_05736 0.60 +0.1 453,970 - MPMX19_05736 0.60 +0.0 454,239 + -1.7 454,239 + +1.1 454,239 + -2.1 454,239 + +0.1 454,239 + -0.1 454,239 + +0.3 454,239 + -1.1 454,240 - -0.1 454,240 - -0.2 454,240 - +0.2 454,240 - -0.8 454,240 - -0.7 454,240 - -0.6 454,643 + MPMX19_05737 0.83 -1.4 454,643 + MPMX19_05737 0.83 -0.5 454,643 + MPMX19_05737 0.83 +0.8 454,643 + MPMX19_05737 0.83 +0.5 454,643 + MPMX19_05737 0.83 -0.2 454,643 + MPMX19_05737 0.83 -1.7 454,644 - MPMX19_05737 0.83 -0.9 454,644 - MPMX19_05737 0.83 -1.7 454,644 - MPMX19_05737 0.83 +0.1 454,644 - MPMX19_05737 0.83 +1.0 454,644 - MPMX19_05737 0.83 +1.4 454,644 - MPMX19_05737 0.83 -0.7 454,644 - MPMX19_05737 0.83 +0.3 454,644 - MPMX19_05737 0.83 -0.6 454,644 - MPMX19_05737 0.83 -0.1 454,644 - MPMX19_05737 0.83 -1.4 454,644 - MPMX19_05737 0.83 +1.4 454,644 - MPMX19_05737 0.83 -0.5 454,681 + +1.1 454,681 + -0.9 454,682 - -2.0 454,682 - -0.1 454,682 - -0.1 454,682 - -1.9 454,792 + MPMX19_05738 0.21 -1.9 454,793 - MPMX19_05738 0.21 -0.9 454,793 - MPMX19_05738 0.21 -1.1 454,894 + MPMX19_05738 0.41 +1.4 454,894 + MPMX19_05738 0.41 -0.1 454,894 + MPMX19_05738 0.41 +0.5 454,894 + MPMX19_05738 0.41 +1.1 454,894 + MPMX19_05738 0.41 -0.7 454,894 + MPMX19_05738 0.41 +0.8 454,894 + MPMX19_05738 0.41 -0.4 454,894 + MPMX19_05738 0.41 -0.9 454,894 + MPMX19_05738 0.41 -0.8 454,894 + MPMX19_05738 0.41 -0.7 454,894 + MPMX19_05738 0.41 +1.5 454,895 - MPMX19_05738 0.41 -0.5 454,895 - MPMX19_05738 0.41 +0.4 454,895 - MPMX19_05738 0.41 +0.4 454,895 - MPMX19_05738 0.41 -0.1 454,895 - MPMX19_05738 0.41 -0.5 454,895 - MPMX19_05738 0.41 -0.5 454,895 - MPMX19_05738 0.41 -0.9 454,895 - MPMX19_05738 0.41 -0.1 454,895 - MPMX19_05738 0.41 -1.2 454,895 - MPMX19_05738 0.41 +0.1 454,966 + MPMX19_05738 0.54 -1.0 454,966 + MPMX19_05738 0.54 +0.5 454,966 + MPMX19_05738 0.54 +1.0 454,966 + MPMX19_05738 0.54 -0.7 454,966 + MPMX19_05738 0.54 -0.0 454,966 + MPMX19_05738 0.54 +0.3 454,967 - MPMX19_05738 0.54 -0.2 454,967 - MPMX19_05738 0.54 -0.5 454,967 - MPMX19_05738 0.54 +0.1 454,967 - MPMX19_05738 0.54 +0.5 455,027 - MPMX19_05738 0.66 -1.0 455,155 + -0.2 455,155 + -1.2 455,156 - -0.1 455,156 - -0.7 455,156 - -1.1 455,156 - -1.6 455,288 + -0.5 455,288 + +1.0 455,288 + -1.8 455,288 + +0.5 455,297 + +0.1 455,297 + -1.6 455,297 + -1.1 455,297 + -1.2 455,297 + -0.5 455,297 + -1.9 455,297 + -1.5 455,297 + -0.6 455,297 + -0.4 455,297 + -0.7 455,297 + -1.4 455,297 + -1.4 455,297 + -1.2 455,297 + -0.3 455,297 + -1.7 455,297 + -0.7 455,298 - +0.3 455,298 - -0.5 455,298 - -1.2 455,298 - -0.2 455,298 - -1.1 455,298 - -1.9 455,298 - +0.5 455,298 - -0.5 455,298 - +0.9 455,300 + -0.5 455,300 + -1.8 455,300 + -0.9 455,300 + -2.0 455,301 - +0.1 455,301 - -1.7 455,399 + MPMX19_05739 0.14 +1.4 455,399 + MPMX19_05739 0.14 +0.8 455,399 + MPMX19_05739 0.14 -1.9 455,399 + MPMX19_05739 0.14 -1.6 455,399 + MPMX19_05739 0.14 -0.4 455,400 - MPMX19_05739 0.14 -0.5 455,400 - MPMX19_05739 0.14 -0.6 455,400 - MPMX19_05739 0.14 +0.4 455,400 - MPMX19_05739 0.14 -0.9 455,400 - MPMX19_05739 0.14 -1.0 455,400 - MPMX19_05739 0.14 +1.9 455,400 - MPMX19_05739 0.14 -0.1 455,532 - MPMX19_05739 0.24 -0.5 455,532 - MPMX19_05739 0.24 -1.2 455,532 - MPMX19_05739 0.24 -0.1 455,618 + MPMX19_05739 0.31 -0.7 455,618 + MPMX19_05739 0.31 -0.7 455,619 - MPMX19_05739 0.31 -0.1 455,619 - MPMX19_05739 0.31 -0.1
Or see this region's nucleotide sequence