Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05728

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05727 and MPMX19_05728 are separated by 15 nucleotidesMPMX19_05728 and MPMX19_05729 are separated by 25 nucleotidesMPMX19_05729 and MPMX19_05730 are separated by 96 nucleotides MPMX19_05727: MPMX19_05727 - Phosphoribosylaminoimidazole-succinocarboxamide synthase, at 445,843 to 446,823 _05727 MPMX19_05728: MPMX19_05728 - Glyoxylate/hydroxypyruvate reductase B, at 446,839 to 447,792 _05728 MPMX19_05729: MPMX19_05729 - hypothetical protein, at 447,818 to 448,570 _05729 MPMX19_05730: MPMX19_05730 - hypothetical protein, at 448,667 to 449,161 _05730 Position (kb) 446 447 448Strain fitness (log2 ratio) -2 -1 0 1 2at 445.946 kb on - strand, within MPMX19_05727at 445.946 kb on - strand, within MPMX19_05727at 446.176 kb on + strand, within MPMX19_05727at 446.176 kb on + strand, within MPMX19_05727at 446.176 kb on + strand, within MPMX19_05727at 446.176 kb on + strand, within MPMX19_05727at 446.176 kb on + strand, within MPMX19_05727at 446.176 kb on + strand, within MPMX19_05727at 446.176 kb on + strand, within MPMX19_05727at 446.176 kb on + strand, within MPMX19_05727at 446.176 kb on + strand, within MPMX19_05727at 446.176 kb on + strand, within MPMX19_05727at 446.177 kb on - strand, within MPMX19_05727at 446.177 kb on - strand, within MPMX19_05727at 446.177 kb on - strand, within MPMX19_05727at 446.177 kb on - strand, within MPMX19_05727at 446.177 kb on - strand, within MPMX19_05727at 446.177 kb on - strand, within MPMX19_05727at 446.177 kb on - strand, within MPMX19_05727at 446.178 kb on + strand, within MPMX19_05727at 446.178 kb on + strand, within MPMX19_05727at 446.178 kb on + strand, within MPMX19_05727at 446.178 kb on + strand, within MPMX19_05727at 446.179 kb on - strand, within MPMX19_05727at 446.179 kb on - strand, within MPMX19_05727at 446.215 kb on + strand, within MPMX19_05727at 446.215 kb on + strand, within MPMX19_05727at 446.215 kb on + strand, within MPMX19_05727at 446.215 kb on + strand, within MPMX19_05727at 446.215 kb on + strand, within MPMX19_05727at 446.216 kb on - strand, within MPMX19_05727at 446.216 kb on - strand, within MPMX19_05727at 446.216 kb on - strand, within MPMX19_05727at 446.216 kb on - strand, within MPMX19_05727at 446.216 kb on - strand, within MPMX19_05727at 446.216 kb on - strand, within MPMX19_05727at 446.216 kb on - strand, within MPMX19_05727at 446.239 kb on + strand, within MPMX19_05727at 446.239 kb on + strand, within MPMX19_05727at 446.239 kb on + strand, within MPMX19_05727at 446.239 kb on + strand, within MPMX19_05727at 446.239 kb on + strand, within MPMX19_05727at 446.239 kb on + strand, within MPMX19_05727at 446.239 kb on + strand, within MPMX19_05727at 446.240 kb on - strand, within MPMX19_05727at 446.240 kb on - strand, within MPMX19_05727at 446.479 kb on + strand, within MPMX19_05727at 446.479 kb on + strand, within MPMX19_05727at 446.479 kb on + strand, within MPMX19_05727at 446.480 kb on - strand, within MPMX19_05727at 446.480 kb on - strand, within MPMX19_05727at 446.551 kb on + strand, within MPMX19_05727at 446.569 kb on + strand, within MPMX19_05727at 446.569 kb on + strand, within MPMX19_05727at 446.570 kb on - strand, within MPMX19_05727at 446.570 kb on - strand, within MPMX19_05727at 446.713 kb on + strand, within MPMX19_05727at 446.713 kb on + strand, within MPMX19_05727at 446.714 kb on - strand, within MPMX19_05727at 446.809 kb on + strandat 446.809 kb on + strandat 446.809 kb on + strandat 446.809 kb on + strandat 446.809 kb on + strandat 446.810 kb on - strandat 446.810 kb on - strandat 446.810 kb on - strandat 446.810 kb on - strandat 446.810 kb on - strandat 446.810 kb on - strandat 446.810 kb on - strandat 446.810 kb on - strandat 446.821 kb on + strandat 446.821 kb on + strandat 446.821 kb on + strandat 446.821 kb on + strandat 446.821 kb on + strandat 446.821 kb on + strandat 446.822 kb on - strandat 446.822 kb on - strandat 446.822 kb on - strandat 446.822 kb on - strandat 446.822 kb on - strandat 446.822 kb on - strandat 446.822 kb on - strandat 446.822 kb on - strandat 446.822 kb on - strandat 446.822 kb on - strandat 446.822 kb on - strandat 446.822 kb on - strandat 446.822 kb on - strandat 446.863 kb on + strandat 446.863 kb on + strandat 446.863 kb on + strandat 446.864 kb on - strandat 446.864 kb on - strandat 447.692 kb on - strand, within MPMX19_05728at 447.709 kb on + strandat 447.709 kb on + strandat 447.710 kb on - strandat 447.721 kb on + strandat 447.721 kb on + strandat 447.721 kb on + strandat 447.721 kb on + strandat 447.722 kb on - strandat 448.313 kb on + strand, within MPMX19_05729at 448.314 kb on - strand, within MPMX19_05729at 448.314 kb on - strand, within MPMX19_05729at 448.314 kb on - strand, within MPMX19_05729at 448.314 kb on - strand, within MPMX19_05729at 448.314 kb on - strand, within MPMX19_05729at 448.314 kb on - strand, within MPMX19_05729at 448.370 kb on + strand, within MPMX19_05729at 448.370 kb on + strand, within MPMX19_05729at 448.370 kb on + strand, within MPMX19_05729at 448.370 kb on + strand, within MPMX19_05729at 448.370 kb on + strand, within MPMX19_05729at 448.370 kb on + strand, within MPMX19_05729at 448.371 kb on - strand, within MPMX19_05729at 448.371 kb on - strand, within MPMX19_05729at 448.371 kb on - strand, within MPMX19_05729at 448.371 kb on - strand, within MPMX19_05729at 448.371 kb on - strand, within MPMX19_05729at 448.371 kb on - strand, within MPMX19_05729at 448.371 kb on - strand, within MPMX19_05729at 448.424 kb on + strand, within MPMX19_05729at 448.424 kb on + strand, within MPMX19_05729at 448.425 kb on - strand, within MPMX19_05729at 448.425 kb on - strand, within MPMX19_05729at 448.425 kb on - strand, within MPMX19_05729at 448.425 kb on - strand, within MPMX19_05729at 448.425 kb on - strand, within MPMX19_05729at 448.594 kb on + strandat 448.610 kb on + strandat 448.610 kb on + strandat 448.610 kb on + strandat 448.610 kb on + strandat 448.611 kb on - strandat 448.611 kb on - strandat 448.611 kb on - strandat 448.631 kb on - strandat 448.631 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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445,946 - MPMX19_05727 0.10 -0.5
445,946 - MPMX19_05727 0.10 +1.1
446,176 + MPMX19_05727 0.34 -1.7
446,176 + MPMX19_05727 0.34 -0.7
446,176 + MPMX19_05727 0.34 -0.2
446,176 + MPMX19_05727 0.34 +0.1
446,176 + MPMX19_05727 0.34 -1.6
446,176 + MPMX19_05727 0.34 -0.9
446,176 + MPMX19_05727 0.34 -0.7
446,176 + MPMX19_05727 0.34 -1.2
446,176 + MPMX19_05727 0.34 -0.5
446,176 + MPMX19_05727 0.34 -1.8
446,177 - MPMX19_05727 0.34 -0.0
446,177 - MPMX19_05727 0.34 -0.9
446,177 - MPMX19_05727 0.34 -0.2
446,177 - MPMX19_05727 0.34 +1.0
446,177 - MPMX19_05727 0.34 -1.5
446,177 - MPMX19_05727 0.34 -0.9
446,177 - MPMX19_05727 0.34 -1.2
446,178 + MPMX19_05727 0.34 -1.8
446,178 + MPMX19_05727 0.34 +0.8
446,178 + MPMX19_05727 0.34 -0.8
446,178 + MPMX19_05727 0.34 +0.4
446,179 - MPMX19_05727 0.34 +1.1
446,179 - MPMX19_05727 0.34 -2.2
446,215 + MPMX19_05727 0.38 -0.6
446,215 + MPMX19_05727 0.38 +1.0
446,215 + MPMX19_05727 0.38 +0.5
446,215 + MPMX19_05727 0.38 +0.3
446,215 + MPMX19_05727 0.38 -1.2
446,216 - MPMX19_05727 0.38 -1.1
446,216 - MPMX19_05727 0.38 -0.7
446,216 - MPMX19_05727 0.38 -0.9
446,216 - MPMX19_05727 0.38 +0.3
446,216 - MPMX19_05727 0.38 -0.2
446,216 - MPMX19_05727 0.38 +0.1
446,216 - MPMX19_05727 0.38 -0.1
446,239 + MPMX19_05727 0.40 -1.5
446,239 + MPMX19_05727 0.40 -0.7
446,239 + MPMX19_05727 0.40 -1.2
446,239 + MPMX19_05727 0.40 -0.5
446,239 + MPMX19_05727 0.40 -0.7
446,239 + MPMX19_05727 0.40 -1.4
446,239 + MPMX19_05727 0.40 -0.7
446,240 - MPMX19_05727 0.40 -2.0
446,240 - MPMX19_05727 0.40 -0.4
446,479 + MPMX19_05727 0.65 -1.4
446,479 + MPMX19_05727 0.65 -1.1
446,479 + MPMX19_05727 0.65 +1.0
446,480 - MPMX19_05727 0.65 -0.4
446,480 - MPMX19_05727 0.65 -0.9
446,551 + MPMX19_05727 0.72 -1.5
446,569 + MPMX19_05727 0.74 -0.5
446,569 + MPMX19_05727 0.74 +0.9
446,570 - MPMX19_05727 0.74 +1.5
446,570 - MPMX19_05727 0.74 -1.1
446,713 + MPMX19_05727 0.89 -0.5
446,713 + MPMX19_05727 0.89 -0.9
446,714 - MPMX19_05727 0.89 -1.4
446,809 + -0.5
446,809 + -0.3
446,809 + +0.8
446,809 + -2.4
446,809 + -1.1
446,810 - -1.0
446,810 - -0.1
446,810 - +0.2
446,810 - -0.1
446,810 - -2.4
446,810 - -1.1
446,810 - -0.2
446,810 - -0.2
446,821 + +1.7
446,821 + +1.3
446,821 + -0.1
446,821 + -0.5
446,821 + +0.2
446,821 + -0.5
446,822 - -1.1
446,822 - -0.7
446,822 - -1.5
446,822 - -0.3
446,822 - -1.3
446,822 - -1.2
446,822 - +0.1
446,822 - -2.1
446,822 - -0.1
446,822 - +0.6
446,822 - -0.0
446,822 - -0.4
446,822 - -0.9
446,863 + -1.4
446,863 + -0.7
446,863 + -0.9
446,864 - -0.1
446,864 - -0.8
447,692 - MPMX19_05728 0.89 -0.5
447,709 + -0.1
447,709 + +0.5
447,710 - -0.4
447,721 + -1.7
447,721 + -0.9
447,721 + -1.2
447,721 + +0.1
447,722 - -0.5
448,313 + MPMX19_05729 0.66 -0.5
448,314 - MPMX19_05729 0.66 +1.1
448,314 - MPMX19_05729 0.66 +0.5
448,314 - MPMX19_05729 0.66 -0.1
448,314 - MPMX19_05729 0.66 +1.2
448,314 - MPMX19_05729 0.66 -0.5
448,314 - MPMX19_05729 0.66 +0.1
448,370 + MPMX19_05729 0.73 -0.9
448,370 + MPMX19_05729 0.73 +1.1
448,370 + MPMX19_05729 0.73 +2.4
448,370 + MPMX19_05729 0.73 -0.2
448,370 + MPMX19_05729 0.73 -0.3
448,370 + MPMX19_05729 0.73 -1.4
448,371 - MPMX19_05729 0.73 -0.5
448,371 - MPMX19_05729 0.73 -0.8
448,371 - MPMX19_05729 0.73 +0.1
448,371 - MPMX19_05729 0.73 -0.7
448,371 - MPMX19_05729 0.73 -1.4
448,371 - MPMX19_05729 0.73 +0.8
448,371 - MPMX19_05729 0.73 +1.0
448,424 + MPMX19_05729 0.80 -1.6
448,424 + MPMX19_05729 0.80 -0.4
448,425 - MPMX19_05729 0.81 -0.4
448,425 - MPMX19_05729 0.81 -1.9
448,425 - MPMX19_05729 0.81 +1.1
448,425 - MPMX19_05729 0.81 -0.7
448,425 - MPMX19_05729 0.81 +0.6
448,594 + -0.1
448,610 + -1.5
448,610 + -1.2
448,610 + -0.6
448,610 + -0.9
448,611 - -1.7
448,611 - +0.8
448,611 - +0.8
448,631 - -0.5
448,631 - +0.7

Or see this region's nucleotide sequence