Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05724 and MPMX19_05725 are separated by 306 nucleotides MPMX19_05725 and MPMX19_05726 are separated by 13 nucleotides MPMX19_05726 and MPMX19_05727 are separated by 103 nucleotides
MPMX19_05724: MPMX19_05724 - Undecaprenyl phosphate N,N'-diacetylbacillosamine 1-phosphate transferase, at 442,493 to 443,215
_05724
MPMX19_05725: MPMX19_05725 - hypothetical protein, at 443,522 to 444,949
_05725
MPMX19_05726: MPMX19_05726 - hypothetical protein, at 444,963 to 445,739
_05726
MPMX19_05727: MPMX19_05727 - Phosphoribosylaminoimidazole-succinocarboxamide synthase, at 445,843 to 446,823
_05727
Position (kb) 443
444
445 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 442.821 kb on + strand, within MPMX19_05724 at 443.011 kb on + strand, within MPMX19_05724 at 443.012 kb on + strand, within MPMX19_05724 at 443.012 kb on + strand, within MPMX19_05724 at 443.012 kb on + strand, within MPMX19_05724 at 443.012 kb on + strand, within MPMX19_05724 at 443.012 kb on + strand, within MPMX19_05724 at 443.012 kb on + strand, within MPMX19_05724 at 443.012 kb on + strand, within MPMX19_05724 at 443.012 kb on + strand, within MPMX19_05724 at 443.012 kb on + strand, within MPMX19_05724 at 443.012 kb on + strand, within MPMX19_05724 at 443.012 kb on + strand, within MPMX19_05724 at 443.012 kb on + strand, within MPMX19_05724 at 443.012 kb on + strand, within MPMX19_05724 at 443.013 kb on - strand, within MPMX19_05724 at 443.013 kb on - strand, within MPMX19_05724 at 443.013 kb on - strand, within MPMX19_05724 at 443.013 kb on - strand, within MPMX19_05724 at 443.013 kb on - strand, within MPMX19_05724 at 443.013 kb on - strand, within MPMX19_05724 at 443.013 kb on - strand, within MPMX19_05724 at 443.013 kb on - strand, within MPMX19_05724 at 443.013 kb on - strand, within MPMX19_05724 at 443.013 kb on - strand, within MPMX19_05724 at 443.013 kb on - strand, within MPMX19_05724 at 443.013 kb on - strand, within MPMX19_05724 at 443.013 kb on - strand, within MPMX19_05724 at 443.013 kb on - strand, within MPMX19_05724 at 443.013 kb on - strand, within MPMX19_05724 at 443.013 kb on - strand, within MPMX19_05724 at 443.013 kb on - strand, within MPMX19_05724 at 443.015 kb on + strand, within MPMX19_05724 at 443.015 kb on + strand, within MPMX19_05724 at 443.015 kb on + strand, within MPMX19_05724 at 443.015 kb on + strand, within MPMX19_05724 at 443.015 kb on + strand, within MPMX19_05724 at 443.015 kb on + strand, within MPMX19_05724 at 443.015 kb on + strand, within MPMX19_05724 at 443.015 kb on + strand, within MPMX19_05724 at 443.016 kb on - strand, within MPMX19_05724 at 443.016 kb on - strand, within MPMX19_05724 at 443.016 kb on - strand, within MPMX19_05724 at 443.016 kb on - strand, within MPMX19_05724 at 443.016 kb on - strand, within MPMX19_05724 at 443.016 kb on - strand, within MPMX19_05724 at 443.016 kb on - strand, within MPMX19_05724 at 443.016 kb on - strand, within MPMX19_05724 at 443.016 kb on - strand, within MPMX19_05724 at 443.016 kb on - strand, within MPMX19_05724 at 443.016 kb on - strand, within MPMX19_05724 at 443.016 kb on - strand, within MPMX19_05724 at 443.036 kb on + strand, within MPMX19_05724 at 443.036 kb on + strand, within MPMX19_05724 at 443.036 kb on + strand, within MPMX19_05724 at 443.036 kb on + strand, within MPMX19_05724 at 443.036 kb on + strand, within MPMX19_05724 at 443.036 kb on + strand, within MPMX19_05724 at 443.036 kb on + strand, within MPMX19_05724 at 443.036 kb on + strand, within MPMX19_05724 at 443.036 kb on + strand, within MPMX19_05724 at 443.036 kb on + strand, within MPMX19_05724 at 443.036 kb on + strand, within MPMX19_05724 at 443.036 kb on + strand, within MPMX19_05724 at 443.037 kb on - strand, within MPMX19_05724 at 443.037 kb on - strand, within MPMX19_05724 at 443.037 kb on - strand, within MPMX19_05724 at 443.037 kb on - strand, within MPMX19_05724 at 443.037 kb on - strand, within MPMX19_05724 at 443.037 kb on - strand, within MPMX19_05724 at 443.037 kb on - strand, within MPMX19_05724 at 443.099 kb on + strand, within MPMX19_05724 at 443.099 kb on + strand, within MPMX19_05724 at 443.100 kb on - strand, within MPMX19_05724 at 443.100 kb on - strand, within MPMX19_05724 at 443.129 kb on + strand, within MPMX19_05724 at 443.129 kb on + strand, within MPMX19_05724 at 443.129 kb on + strand, within MPMX19_05724 at 443.129 kb on + strand, within MPMX19_05724 at 443.129 kb on + strand, within MPMX19_05724 at 443.129 kb on + strand, within MPMX19_05724 at 443.129 kb on + strand, within MPMX19_05724 at 443.129 kb on + strand, within MPMX19_05724 at 443.129 kb on + strand, within MPMX19_05724 at 443.129 kb on + strand, within MPMX19_05724 at 443.129 kb on + strand, within MPMX19_05724 at 443.129 kb on + strand, within MPMX19_05724 at 443.129 kb on + strand, within MPMX19_05724 at 443.129 kb on + strand, within MPMX19_05724 at 443.129 kb on + strand, within MPMX19_05724 at 443.130 kb on - strand, within MPMX19_05724 at 443.130 kb on - strand, within MPMX19_05724 at 443.130 kb on - strand, within MPMX19_05724 at 443.130 kb on - strand, within MPMX19_05724 at 443.130 kb on - strand, within MPMX19_05724 at 443.130 kb on - strand, within MPMX19_05724 at 443.130 kb on - strand, within MPMX19_05724 at 443.130 kb on - strand, within MPMX19_05724 at 443.130 kb on - strand, within MPMX19_05724 at 443.130 kb on - strand, within MPMX19_05724 at 443.130 kb on - strand, within MPMX19_05724 at 443.130 kb on - strand, within MPMX19_05724 at 443.130 kb on - strand, within MPMX19_05724 at 443.210 kb on + strand at 443.210 kb on + strand at 443.211 kb on - strand at 443.211 kb on - strand at 443.211 kb on - strand at 443.334 kb on + strand at 443.334 kb on + strand at 443.334 kb on + strand at 443.334 kb on + strand at 443.334 kb on + strand at 443.334 kb on + strand at 443.334 kb on + strand at 443.334 kb on + strand at 443.334 kb on + strand at 443.334 kb on + strand at 443.334 kb on + strand at 443.334 kb on + strand at 443.334 kb on + strand at 443.334 kb on + strand at 443.334 kb on + strand at 443.334 kb on + strand at 443.334 kb on + strand at 443.334 kb on + strand at 443.334 kb on + strand at 443.334 kb on + strand at 443.334 kb on + strand at 443.334 kb on + strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.434 kb on + strand at 443.434 kb on + strand at 443.434 kb on + strand at 443.435 kb on - strand at 443.435 kb on - strand at 443.435 kb on - strand at 443.435 kb on - strand at 443.435 kb on - strand at 443.435 kb on - strand at 443.435 kb on - strand at 443.435 kb on - strand at 443.463 kb on + strand at 443.463 kb on + strand at 443.463 kb on + strand at 443.463 kb on + strand at 443.463 kb on + strand at 443.463 kb on + strand at 443.463 kb on + strand at 443.463 kb on + strand at 443.463 kb on + strand at 443.463 kb on + strand at 443.463 kb on + strand at 443.463 kb on + strand at 443.463 kb on + strand at 443.463 kb on + strand at 443.463 kb on + strand at 443.463 kb on + strand at 443.463 kb on + strand at 443.464 kb on - strand at 443.464 kb on - strand at 443.464 kb on - strand at 443.465 kb on + strand at 443.465 kb on + strand at 443.465 kb on + strand at 443.465 kb on + strand at 443.465 kb on + strand at 443.465 kb on + strand at 443.465 kb on + strand at 443.465 kb on + strand at 443.465 kb on + strand at 443.465 kb on + strand at 443.465 kb on + strand at 443.466 kb on - strand at 443.466 kb on - strand at 443.466 kb on - strand at 443.466 kb on - strand at 443.466 kb on - strand at 443.466 kb on - strand at 443.633 kb on - strand at 443.687 kb on + strand, within MPMX19_05725 at 443.687 kb on + strand, within MPMX19_05725 at 443.687 kb on + strand, within MPMX19_05725 at 443.687 kb on + strand, within MPMX19_05725 at 443.688 kb on - strand, within MPMX19_05725 at 443.688 kb on - strand, within MPMX19_05725 at 443.688 kb on - strand, within MPMX19_05725 at 443.688 kb on - strand, within MPMX19_05725 at 443.871 kb on - strand, within MPMX19_05725 at 443.903 kb on + strand, within MPMX19_05725 at 444.242 kb on + strand, within MPMX19_05725 at 444.242 kb on + strand, within MPMX19_05725 at 444.242 kb on + strand, within MPMX19_05725 at 444.603 kb on - strand, within MPMX19_05725 at 444.674 kb on + strand, within MPMX19_05725 at 444.675 kb on - strand, within MPMX19_05725 at 444.678 kb on - strand, within MPMX19_05725 at 444.952 kb on + strand at 444.952 kb on + strand at 444.952 kb on + strand at 444.952 kb on + strand at 444.952 kb on + strand at 444.952 kb on + strand at 444.952 kb on + strand at 444.952 kb on + strand at 444.952 kb on + strand at 444.952 kb on + strand at 444.953 kb on - strand at 444.953 kb on - strand at 444.953 kb on - strand at 444.953 kb on - strand at 444.953 kb on - strand at 444.953 kb on - strand at 444.953 kb on - strand at 445.457 kb on - strand, within MPMX19_05726 at 445.457 kb on - strand, within MPMX19_05726 at 445.457 kb on - strand, within MPMX19_05726 at 445.678 kb on + strand at 445.678 kb on + strand at 445.678 kb on + strand at 445.678 kb on + strand at 445.678 kb on + strand at 445.678 kb on + strand at 445.678 kb on + strand at 445.678 kb on + strand at 445.678 kb on + strand at 445.678 kb on + strand at 445.678 kb on + strand at 445.678 kb on + strand at 445.678 kb on + strand at 445.679 kb on - strand at 445.679 kb on - strand at 445.679 kb on - strand at 445.679 kb on - strand at 445.679 kb on - strand at 445.679 kb on - strand at 445.679 kb on - strand at 445.679 kb on - strand at 445.679 kb on - strand at 445.679 kb on - strand at 445.679 kb on - strand at 445.679 kb on - strand at 445.679 kb on - strand at 445.760 kb on + strand at 445.760 kb on + strand at 445.761 kb on - strand at 445.761 kb on - strand at 445.761 kb on - strand at 445.761 kb on - strand at 445.765 kb on + strand at 445.765 kb on + strand at 445.765 kb on + strand at 445.765 kb on + strand at 445.765 kb on + strand at 445.765 kb on + strand at 445.766 kb on - strand at 445.766 kb on - strand at 445.766 kb on - strand at 445.795 kb on + strand at 445.946 kb on - strand, within MPMX19_05727 at 445.946 kb on - strand, within MPMX19_05727
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 442,821 + MPMX19_05724 0.45 -1.1 443,011 + MPMX19_05724 0.72 -2.0 443,012 + MPMX19_05724 0.72 -0.5 443,012 + MPMX19_05724 0.72 -0.6 443,012 + MPMX19_05724 0.72 -1.4 443,012 + MPMX19_05724 0.72 -2.1 443,012 + MPMX19_05724 0.72 -1.0 443,012 + MPMX19_05724 0.72 -0.6 443,012 + MPMX19_05724 0.72 -0.0 443,012 + MPMX19_05724 0.72 -1.1 443,012 + MPMX19_05724 0.72 +0.4 443,012 + MPMX19_05724 0.72 -0.4 443,012 + MPMX19_05724 0.72 +0.1 443,012 + MPMX19_05724 0.72 -1.4 443,012 + MPMX19_05724 0.72 -1.4 443,013 - MPMX19_05724 0.72 -0.7 443,013 - MPMX19_05724 0.72 +0.2 443,013 - MPMX19_05724 0.72 -1.1 443,013 - MPMX19_05724 0.72 -1.8 443,013 - MPMX19_05724 0.72 -0.4 443,013 - MPMX19_05724 0.72 -0.3 443,013 - MPMX19_05724 0.72 -0.9 443,013 - MPMX19_05724 0.72 -0.7 443,013 - MPMX19_05724 0.72 +0.3 443,013 - MPMX19_05724 0.72 -1.2 443,013 - MPMX19_05724 0.72 -0.4 443,013 - MPMX19_05724 0.72 -0.3 443,013 - MPMX19_05724 0.72 -0.4 443,013 - MPMX19_05724 0.72 -0.4 443,013 - MPMX19_05724 0.72 -2.0 443,013 - MPMX19_05724 0.72 -0.7 443,013 - MPMX19_05724 0.72 +0.2 443,015 + MPMX19_05724 0.72 -1.3 443,015 + MPMX19_05724 0.72 -0.7 443,015 + MPMX19_05724 0.72 -2.1 443,015 + MPMX19_05724 0.72 -0.4 443,015 + MPMX19_05724 0.72 -0.7 443,015 + MPMX19_05724 0.72 -0.4 443,015 + MPMX19_05724 0.72 -0.3 443,015 + MPMX19_05724 0.72 -0.7 443,016 - MPMX19_05724 0.72 -0.5 443,016 - MPMX19_05724 0.72 +0.5 443,016 - MPMX19_05724 0.72 -0.2 443,016 - MPMX19_05724 0.72 -1.1 443,016 - MPMX19_05724 0.72 -0.1 443,016 - MPMX19_05724 0.72 -0.7 443,016 - MPMX19_05724 0.72 -1.1 443,016 - MPMX19_05724 0.72 -2.1 443,016 - MPMX19_05724 0.72 -0.2 443,016 - MPMX19_05724 0.72 -0.0 443,016 - MPMX19_05724 0.72 -0.4 443,016 - MPMX19_05724 0.72 -1.5 443,036 + MPMX19_05724 0.75 +2.1 443,036 + MPMX19_05724 0.75 -0.0 443,036 + MPMX19_05724 0.75 -0.7 443,036 + MPMX19_05724 0.75 -0.6 443,036 + MPMX19_05724 0.75 -0.7 443,036 + MPMX19_05724 0.75 -2.5 443,036 + MPMX19_05724 0.75 -0.1 443,036 + MPMX19_05724 0.75 -0.5 443,036 + MPMX19_05724 0.75 -0.3 443,036 + MPMX19_05724 0.75 +0.7 443,036 + MPMX19_05724 0.75 -0.8 443,036 + MPMX19_05724 0.75 +0.1 443,037 - MPMX19_05724 0.75 +1.5 443,037 - MPMX19_05724 0.75 -2.5 443,037 - MPMX19_05724 0.75 -0.6 443,037 - MPMX19_05724 0.75 -0.9 443,037 - MPMX19_05724 0.75 -0.9 443,037 - MPMX19_05724 0.75 -0.3 443,037 - MPMX19_05724 0.75 -0.5 443,099 + MPMX19_05724 0.84 -0.9 443,099 + MPMX19_05724 0.84 -1.0 443,100 - MPMX19_05724 0.84 +0.2 443,100 - MPMX19_05724 0.84 +0.8 443,129 + MPMX19_05724 0.88 -2.3 443,129 + MPMX19_05724 0.88 -1.2 443,129 + MPMX19_05724 0.88 -1.5 443,129 + MPMX19_05724 0.88 +0.3 443,129 + MPMX19_05724 0.88 -1.4 443,129 + MPMX19_05724 0.88 -1.2 443,129 + MPMX19_05724 0.88 -0.0 443,129 + MPMX19_05724 0.88 -0.8 443,129 + MPMX19_05724 0.88 -2.4 443,129 + MPMX19_05724 0.88 -0.8 443,129 + MPMX19_05724 0.88 -0.3 443,129 + MPMX19_05724 0.88 -1.4 443,129 + MPMX19_05724 0.88 -1.1 443,129 + MPMX19_05724 0.88 -2.1 443,129 + MPMX19_05724 0.88 -1.8 443,130 - MPMX19_05724 0.88 -0.4 443,130 - MPMX19_05724 0.88 -0.3 443,130 - MPMX19_05724 0.88 -1.8 443,130 - MPMX19_05724 0.88 -0.4 443,130 - MPMX19_05724 0.88 -1.3 443,130 - MPMX19_05724 0.88 +1.4 443,130 - MPMX19_05724 0.88 -0.1 443,130 - MPMX19_05724 0.88 +0.3 443,130 - MPMX19_05724 0.88 +1.1 443,130 - MPMX19_05724 0.88 -0.4 443,130 - MPMX19_05724 0.88 -0.2 443,130 - MPMX19_05724 0.88 -1.4 443,130 - MPMX19_05724 0.88 +0.5 443,210 + -0.2 443,210 + -1.1 443,211 - -1.0 443,211 - -0.9 443,211 - +0.1 443,334 + -0.4 443,334 + -1.0 443,334 + +1.1 443,334 + -1.1 443,334 + +0.1 443,334 + -0.9 443,334 + -1.4 443,334 + -0.7 443,334 + -0.7 443,334 + -0.8 443,334 + +0.1 443,334 + +0.7 443,334 + -0.2 443,334 + -0.0 443,334 + -1.9 443,334 + -0.4 443,334 + -1.3 443,334 + -0.5 443,334 + +0.2 443,334 + -0.3 443,334 + -0.3 443,334 + -0.7 443,335 - -1.5 443,335 - -0.1 443,335 - -2.1 443,335 - +0.5 443,335 - -0.8 443,335 - -0.5 443,335 - +1.4 443,335 - -0.6 443,335 - -0.7 443,335 - +0.3 443,335 - -0.4 443,335 - -1.1 443,335 - +1.1 443,335 - -1.4 443,335 - -0.9 443,335 - -0.8 443,335 - +0.3 443,335 - -1.5 443,335 - +0.4 443,335 - -0.0 443,335 - +1.6 443,335 - -0.1 443,335 - -1.8 443,335 - +1.7 443,335 - +0.1 443,335 - -0.1 443,335 - -3.1 443,335 - +0.2 443,434 + +0.5 443,434 + -1.6 443,434 + +1.7 443,435 - +1.3 443,435 - +1.1 443,435 - +0.8 443,435 - -1.2 443,435 - -1.1 443,435 - +0.1 443,435 - -1.1 443,435 - -2.0 443,463 + +0.3 443,463 + +0.1 443,463 + +0.5 443,463 + -1.0 443,463 + -1.2 443,463 + +1.4 443,463 + +0.9 443,463 + -1.1 443,463 + -0.9 443,463 + -0.3 443,463 + -1.1 443,463 + +0.7 443,463 + -1.1 443,463 + -0.1 443,463 + -1.5 443,463 + -2.4 443,463 + -1.1 443,464 - -0.6 443,464 - +0.1 443,464 - -0.8 443,465 + -1.7 443,465 + +1.0 443,465 + -1.5 443,465 + -1.4 443,465 + -0.2 443,465 + +1.1 443,465 + -0.2 443,465 + -0.7 443,465 + +0.1 443,465 + -1.1 443,465 + +1.1 443,466 - +0.1 443,466 - -0.7 443,466 - -0.6 443,466 - -1.2 443,466 - -0.4 443,466 - +0.5 443,633 - +0.2 443,687 + MPMX19_05725 0.12 +0.5 443,687 + MPMX19_05725 0.12 -0.7 443,687 + MPMX19_05725 0.12 +2.1 443,687 + MPMX19_05725 0.12 -0.2 443,688 - MPMX19_05725 0.12 +0.3 443,688 - MPMX19_05725 0.12 +1.1 443,688 - MPMX19_05725 0.12 +0.1 443,688 - MPMX19_05725 0.12 +0.5 443,871 - MPMX19_05725 0.24 +0.5 443,903 + MPMX19_05725 0.27 +2.1 444,242 + MPMX19_05725 0.50 +0.5 444,242 + MPMX19_05725 0.50 +1.1 444,242 + MPMX19_05725 0.50 -0.9 444,603 - MPMX19_05725 0.76 -0.5 444,674 + MPMX19_05725 0.81 +1.1 444,675 - MPMX19_05725 0.81 -0.5 444,678 - MPMX19_05725 0.81 +0.5 444,952 + +0.1 444,952 + +0.8 444,952 + -0.5 444,952 + -0.4 444,952 + -0.2 444,952 + -0.0 444,952 + +1.3 444,952 + +0.1 444,952 + -0.8 444,952 + -0.4 444,953 - +1.1 444,953 - -0.9 444,953 - -0.6 444,953 - +0.4 444,953 - -0.4 444,953 - -0.5 444,953 - +0.2 445,457 - MPMX19_05726 0.64 -0.2 445,457 - MPMX19_05726 0.64 +0.1 445,457 - MPMX19_05726 0.64 -1.4 445,678 + -1.0 445,678 + +0.6 445,678 + +0.6 445,678 + -0.8 445,678 + -1.3 445,678 + -2.3 445,678 + -0.6 445,678 + -0.1 445,678 + +0.1 445,678 + -2.8 445,678 + +1.1 445,678 + -0.9 445,678 + +1.0 445,679 - -0.7 445,679 - +0.8 445,679 - +0.5 445,679 - -0.6 445,679 - -0.9 445,679 - +1.1 445,679 - -0.0 445,679 - -0.2 445,679 - -0.3 445,679 - -0.5 445,679 - +0.1 445,679 - +1.1 445,679 - -0.3 445,760 + -0.7 445,760 + -2.3 445,761 - -0.3 445,761 - -0.4 445,761 - -0.1 445,761 - -1.4 445,765 + +0.1 445,765 + +0.8 445,765 + -1.0 445,765 + +0.1 445,765 + -0.5 445,765 + -1.5 445,766 - -0.4 445,766 - -1.1 445,766 - -1.6 445,795 + +0.4 445,946 - MPMX19_05727 0.10 -0.5 445,946 - MPMX19_05727 0.10 +1.1
Or see this region's nucleotide sequence