Strain Fitness in Azospirillum sp. SherDot2

Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05723

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	NL-CCM, start OD=0.3
				remove
440,786	+	MPMX19_05721	0.78	+0.5
440,880	-	MPMX19_05721	0.87	-0.9
440,954	+			-0.1
440,954	+			-2.0
440,954	+			+0.1
440,954	+			+0.7
440,954	+			+0.7
440,955	-			+0.5
440,955	-			+0.5
440,955	-			+0.8
440,955	-			-0.8
440,955	-			+0.6
440,955	-			+1.4
440,955	-			+0.1
440,998	+			-1.1
440,998	+			+0.3
440,998	+			+0.1
440,998	+			-0.4
440,998	+			+0.3
440,998	+			-0.0
440,998	+			+0.6
440,998	+			-0.2
440,998	+			-1.2
440,999	-			-1.2
440,999	-			+0.1
440,999	-			-1.5
440,999	-			-0.8
440,999	-			+0.1
440,999	-			-2.1
440,999	-			+1.5
440,999	-			-1.2
440,999	-			+1.5
440,999	-			+0.1
441,159	+	MPMX19_05722	0.53	-0.2
441,159	+	MPMX19_05722	0.53	-1.3
441,159	+	MPMX19_05722	0.53	-0.4
441,159	+	MPMX19_05722	0.53	-0.3
441,159	+	MPMX19_05722	0.53	-0.5
441,159	+	MPMX19_05722	0.53	-2.1
441,159	+	MPMX19_05722	0.53	-1.1
441,160	-	MPMX19_05722	0.54	-0.4
441,160	-	MPMX19_05722	0.54	-0.8
441,160	-	MPMX19_05722	0.54	-0.9
441,160	-	MPMX19_05722	0.54	-1.8
441,160	-	MPMX19_05722	0.54	-0.5
441,160	-	MPMX19_05722	0.54	-0.6
441,160	-	MPMX19_05722	0.54	-0.4
441,181	-	MPMX19_05722	0.63	+0.2
441,181	-	MPMX19_05722	0.63	-0.6
441,765	+	MPMX19_05723	0.43	-0.5
441,765	+	MPMX19_05723	0.43	+1.1
441,765	+	MPMX19_05723	0.43	-0.5
441,766	-	MPMX19_05723	0.43	-1.4
441,766	-	MPMX19_05723	0.43	-0.4
441,766	-	MPMX19_05723	0.43	+0.5
441,766	-	MPMX19_05723	0.43	-1.3
441,766	-	MPMX19_05723	0.43	-1.6
441,797	+	MPMX19_05723	0.46	-1.5
441,798	-	MPMX19_05723	0.46	-1.7
442,144	+	MPMX19_05723	0.79	-0.8
442,144	+	MPMX19_05723	0.79	-0.2
442,145	-	MPMX19_05723	0.79	-0.6
442,145	-	MPMX19_05723	0.79	-0.9
442,145	-	MPMX19_05723	0.79	-0.4
442,145	-	MPMX19_05723	0.79	-2.0
442,145	-	MPMX19_05723	0.79	+0.3
442,162	-	MPMX19_05723	0.81	-1.1
442,162	-	MPMX19_05723	0.81	-0.7
442,360	+			-0.0
442,360	+			-1.7
442,360	+			+1.5
442,360	+			-0.4
442,360	+			-1.1
442,360	+			-0.4
442,360	+			-0.4
442,361	-			-1.7
442,361	-			-0.5
442,364	+			-0.5
442,364	+			+1.4
442,364	+			-0.6
442,365	-			-0.9
442,365	-			+0.7
442,454	+			+0.5
442,454	+			+0.1
442,454	+			+0.1
442,454	+			-1.9
442,454	+			-1.2
442,454	+			-0.6
442,454	+			+1.8
442,454	+			-1.0
442,454	+			-0.9
442,454	+			+0.5
442,454	+			-1.0
442,454	+			-0.8
442,454	+			-0.2
442,455	-			+0.9
442,455	-			-1.4
442,455	-			-0.2
442,455	-			-1.8
442,455	-			+0.2
442,455	-			-1.5
442,455	-			-0.1
442,455	-			+1.8
442,455	-			-0.9
442,455	-			-0.7
442,455	-			+0.8
442,455	-			-0.2
442,455	-			+0.4
442,455	-			-0.5
442,455	-			-2.1
442,455	-			-0.8
442,489	+			-0.2
442,489	+			-0.2
442,489	+			+0.2
442,489	+			-0.5
442,489	+			+1.0
442,489	+			-1.2
442,489	+			-1.6
442,489	+			+0.9
442,489	+			-0.6
442,489	+			-1.8
442,489	+			-1.5
442,490	-			-0.5
442,490	-			-0.2
442,490	-			-0.5
442,490	-			-2.3
442,490	-			-0.0
442,490	-			-1.7
442,490	-			-1.2
442,490	-			-0.2
442,490	-			-1.1
442,490	-			-0.5
442,490	-			-0.4
442,490	-			-0.5
442,490	-			+1.1
442,490	-			+0.1
442,490	-			-1.4
442,821	+	MPMX19_05724	0.45	-1.1
443,011	+	MPMX19_05724	0.72	-2.0
443,012	+	MPMX19_05724	0.72	-0.5
443,012	+	MPMX19_05724	0.72	-0.6
443,012	+	MPMX19_05724	0.72	-1.4
443,012	+	MPMX19_05724	0.72	-2.1
443,012	+	MPMX19_05724	0.72	-1.0
443,012	+	MPMX19_05724	0.72	-0.6
443,012	+	MPMX19_05724	0.72	-0.0
443,012	+	MPMX19_05724	0.72	-1.1
443,012	+	MPMX19_05724	0.72	+0.4
443,012	+	MPMX19_05724	0.72	-0.4
443,012	+	MPMX19_05724	0.72	+0.1
443,012	+	MPMX19_05724	0.72	-1.4
443,012	+	MPMX19_05724	0.72	-1.4
443,013	-	MPMX19_05724	0.72	-0.7
443,013	-	MPMX19_05724	0.72	+0.2
443,013	-	MPMX19_05724	0.72	-1.1
443,013	-	MPMX19_05724	0.72	-1.8
443,013	-	MPMX19_05724	0.72	-0.4
443,013	-	MPMX19_05724	0.72	-0.3
443,013	-	MPMX19_05724	0.72	-0.9
443,013	-	MPMX19_05724	0.72	-0.7
443,013	-	MPMX19_05724	0.72	+0.3
443,013	-	MPMX19_05724	0.72	-1.2
443,013	-	MPMX19_05724	0.72	-0.4
443,013	-	MPMX19_05724	0.72	-0.3
443,013	-	MPMX19_05724	0.72	-0.4
443,013	-	MPMX19_05724	0.72	-0.4
443,013	-	MPMX19_05724	0.72	-2.0
443,013	-	MPMX19_05724	0.72	-0.7
443,013	-	MPMX19_05724	0.72	+0.2
443,015	+	MPMX19_05724	0.72	-1.3
443,015	+	MPMX19_05724	0.72	-0.7
443,015	+	MPMX19_05724	0.72	-2.1
443,015	+	MPMX19_05724	0.72	-0.4
443,015	+	MPMX19_05724	0.72	-0.7
443,015	+	MPMX19_05724	0.72	-0.4
443,015	+	MPMX19_05724	0.72	-0.3
443,015	+	MPMX19_05724	0.72	-0.7
443,016	-	MPMX19_05724	0.72	-0.5
443,016	-	MPMX19_05724	0.72	+0.5
443,016	-	MPMX19_05724	0.72	-0.2
443,016	-	MPMX19_05724	0.72	-1.1
443,016	-	MPMX19_05724	0.72	-0.1
443,016	-	MPMX19_05724	0.72	-0.7
443,016	-	MPMX19_05724	0.72	-1.1
443,016	-	MPMX19_05724	0.72	-2.1
443,016	-	MPMX19_05724	0.72	-0.2
443,016	-	MPMX19_05724	0.72	-0.0
443,016	-	MPMX19_05724	0.72	-0.4
443,016	-	MPMX19_05724	0.72	-1.5
443,036	+	MPMX19_05724	0.75	+2.1
443,036	+	MPMX19_05724	0.75	-0.0
443,036	+	MPMX19_05724	0.75	-0.7
443,036	+	MPMX19_05724	0.75	-0.6
443,036	+	MPMX19_05724	0.75	-0.7
443,036	+	MPMX19_05724	0.75	-2.5
443,036	+	MPMX19_05724	0.75	-0.1
443,036	+	MPMX19_05724	0.75	-0.5
443,036	+	MPMX19_05724	0.75	-0.3
443,036	+	MPMX19_05724	0.75	+0.7
443,036	+	MPMX19_05724	0.75	-0.8
443,036	+	MPMX19_05724	0.75	+0.1
443,037	-	MPMX19_05724	0.75	+1.5
443,037	-	MPMX19_05724	0.75	-2.5
443,037	-	MPMX19_05724	0.75	-0.6
443,037	-	MPMX19_05724	0.75	-0.9
443,037	-	MPMX19_05724	0.75	-0.9
443,037	-	MPMX19_05724	0.75	-0.3
443,037	-	MPMX19_05724	0.75	-0.5
443,099	+	MPMX19_05724	0.84	-0.9
443,099	+	MPMX19_05724	0.84	-1.0
443,100	-	MPMX19_05724	0.84	+0.2
443,100	-	MPMX19_05724	0.84	+0.8
443,129	+	MPMX19_05724	0.88	-2.3
443,129	+	MPMX19_05724	0.88	-1.2
443,129	+	MPMX19_05724	0.88	-1.5
443,129	+	MPMX19_05724	0.88	+0.3
443,129	+	MPMX19_05724	0.88	-1.4
443,129	+	MPMX19_05724	0.88	-1.2
443,129	+	MPMX19_05724	0.88	-0.0
443,129	+	MPMX19_05724	0.88	-0.8
443,129	+	MPMX19_05724	0.88	-2.4
443,129	+	MPMX19_05724	0.88	-0.8
443,129	+	MPMX19_05724	0.88	-0.3
443,129	+	MPMX19_05724	0.88	-1.4
443,129	+	MPMX19_05724	0.88	-1.1
443,129	+	MPMX19_05724	0.88	-2.1
443,129	+	MPMX19_05724	0.88	-1.8
443,130	-	MPMX19_05724	0.88	-0.4
443,130	-	MPMX19_05724	0.88	-0.3
443,130	-	MPMX19_05724	0.88	-1.8
443,130	-	MPMX19_05724	0.88	-0.4
443,130	-	MPMX19_05724	0.88	-1.3
443,130	-	MPMX19_05724	0.88	+1.4
443,130	-	MPMX19_05724	0.88	-0.1
443,130	-	MPMX19_05724	0.88	+0.3
443,130	-	MPMX19_05724	0.88	+1.1
443,130	-	MPMX19_05724	0.88	-0.4
443,130	-	MPMX19_05724	0.88	-0.2
443,130	-	MPMX19_05724	0.88	-1.4
443,130	-	MPMX19_05724	0.88	+0.5
443,210	+			-0.2
443,210	+			-1.1
443,211	-			-1.0
443,211	-			-0.9
443,211	-			+0.1
443,334	+			-0.4
443,334	+			-1.0
443,334	+			+1.1
443,334	+			-1.1
443,334	+			+0.1
443,334	+			-0.9
443,334	+			-1.4
443,334	+			-0.7
443,334	+			-0.7
443,334	+			-0.8
443,334	+			+0.1
443,334	+			+0.7
443,334	+			-0.2
443,334	+			-0.0
443,334	+			-1.9
443,334	+			-0.4
443,334	+			-1.3
443,334	+			-0.5
443,334	+			+0.2
443,334	+			-0.3
443,334	+			-0.3
443,334	+			-0.7
443,335	-			-1.5
443,335	-			-0.1
443,335	-			-2.1
443,335	-			+0.5
443,335	-			-0.8
443,335	-			-0.5
443,335	-			+1.4
443,335	-			-0.6
443,335	-			-0.7
443,335	-			+0.3
443,335	-			-0.4
443,335	-			-1.1
443,335	-			+1.1
443,335	-			-1.4
443,335	-			-0.9
443,335	-			-0.8
443,335	-			+0.3
443,335	-			-1.5
443,335	-			+0.4
443,335	-			-0.0
443,335	-			+1.6
443,335	-			-0.1
443,335	-			-1.8
443,335	-			+1.7
443,335	-			+0.1
443,335	-			-0.1
443,335	-			-3.1
443,335	-			+0.2

Or see this region's nucleotide sequence