Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05716 and MPMX19_05717 are separated by 12 nucleotides MPMX19_05717 and MPMX19_05718 are separated by 110 nucleotides MPMX19_05718 and MPMX19_05719 are separated by 198 nucleotides
MPMX19_05716: MPMX19_05716 - hypothetical protein, at 434,976 to 436,034
_05716
MPMX19_05717: MPMX19_05717 - hypothetical protein, at 436,047 to 436,874
_05717
MPMX19_05718: MPMX19_05718 - hypothetical protein, at 436,985 to 437,650
_05718
MPMX19_05719: MPMX19_05719 - hypothetical protein, at 437,849 to 438,448
_05719
Position (kb) 436
437
438 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 436.006 kb on + strand at 436.006 kb on + strand at 436.006 kb on + strand at 436.006 kb on + strand at 436.006 kb on + strand at 436.006 kb on + strand at 436.006 kb on + strand at 436.006 kb on + strand at 436.006 kb on + strand at 436.007 kb on - strand at 436.007 kb on - strand at 436.007 kb on - strand at 436.007 kb on - strand at 436.007 kb on - strand at 436.007 kb on - strand at 436.007 kb on - strand at 436.007 kb on - strand at 436.007 kb on - strand at 436.007 kb on - strand at 436.007 kb on - strand at 436.007 kb on - strand at 436.007 kb on - strand at 436.007 kb on - strand at 436.007 kb on - strand at 436.007 kb on - strand at 436.007 kb on - strand at 436.007 kb on - strand at 436.007 kb on - strand at 436.007 kb on - strand at 436.007 kb on - strand at 436.009 kb on + strand at 436.009 kb on + strand at 436.009 kb on + strand at 436.009 kb on + strand at 436.010 kb on - strand at 436.010 kb on - strand at 436.010 kb on - strand at 436.010 kb on - strand at 436.010 kb on - strand at 436.010 kb on - strand at 436.010 kb on - strand at 436.341 kb on + strand, within MPMX19_05717 at 436.341 kb on + strand, within MPMX19_05717 at 436.341 kb on + strand, within MPMX19_05717 at 436.341 kb on + strand, within MPMX19_05717 at 436.341 kb on + strand, within MPMX19_05717 at 436.341 kb on + strand, within MPMX19_05717 at 436.341 kb on + strand, within MPMX19_05717 at 436.341 kb on + strand, within MPMX19_05717 at 436.342 kb on - strand, within MPMX19_05717 at 436.342 kb on - strand, within MPMX19_05717 at 436.342 kb on - strand, within MPMX19_05717 at 436.342 kb on - strand, within MPMX19_05717 at 436.342 kb on - strand, within MPMX19_05717 at 436.342 kb on - strand, within MPMX19_05717 at 436.531 kb on + strand, within MPMX19_05717 at 436.531 kb on + strand, within MPMX19_05717 at 436.531 kb on + strand, within MPMX19_05717 at 436.531 kb on + strand, within MPMX19_05717 at 436.531 kb on + strand, within MPMX19_05717 at 436.532 kb on - strand, within MPMX19_05717 at 436.532 kb on - strand, within MPMX19_05717 at 436.532 kb on - strand, within MPMX19_05717 at 436.532 kb on - strand, within MPMX19_05717 at 436.532 kb on - strand, within MPMX19_05717 at 436.532 kb on - strand, within MPMX19_05717 at 436.980 kb on + strand at 436.980 kb on + strand at 436.981 kb on - strand at 436.981 kb on - strand at 436.994 kb on - strand at 437.052 kb on + strand, within MPMX19_05718 at 437.052 kb on + strand, within MPMX19_05718 at 437.052 kb on + strand, within MPMX19_05718 at 437.052 kb on + strand, within MPMX19_05718 at 437.052 kb on + strand, within MPMX19_05718 at 437.052 kb on + strand, within MPMX19_05718 at 437.052 kb on + strand, within MPMX19_05718 at 437.052 kb on + strand, within MPMX19_05718 at 437.052 kb on + strand, within MPMX19_05718 at 437.052 kb on + strand, within MPMX19_05718 at 437.052 kb on + strand, within MPMX19_05718 at 437.052 kb on + strand, within MPMX19_05718 at 437.052 kb on + strand, within MPMX19_05718 at 437.052 kb on + strand, within MPMX19_05718 at 437.052 kb on + strand, within MPMX19_05718 at 437.052 kb on + strand, within MPMX19_05718 at 437.053 kb on - strand, within MPMX19_05718 at 437.053 kb on - strand, within MPMX19_05718 at 437.053 kb on - strand, within MPMX19_05718 at 437.053 kb on - strand, within MPMX19_05718 at 437.053 kb on - strand, within MPMX19_05718 at 437.053 kb on - strand, within MPMX19_05718 at 437.053 kb on - strand, within MPMX19_05718 at 437.053 kb on - strand, within MPMX19_05718 at 437.053 kb on - strand, within MPMX19_05718 at 437.053 kb on - strand, within MPMX19_05718 at 437.053 kb on - strand, within MPMX19_05718 at 437.053 kb on - strand, within MPMX19_05718 at 437.053 kb on - strand, within MPMX19_05718 at 437.053 kb on - strand, within MPMX19_05718 at 437.053 kb on - strand, within MPMX19_05718 at 437.053 kb on - strand, within MPMX19_05718 at 437.076 kb on + strand, within MPMX19_05718 at 437.076 kb on + strand, within MPMX19_05718 at 437.077 kb on - strand, within MPMX19_05718 at 437.077 kb on - strand, within MPMX19_05718 at 437.077 kb on - strand, within MPMX19_05718 at 437.077 kb on - strand, within MPMX19_05718 at 437.077 kb on - strand, within MPMX19_05718 at 437.077 kb on - strand, within MPMX19_05718 at 437.703 kb on + strand at 437.703 kb on + strand at 437.703 kb on + strand at 437.703 kb on + strand at 437.703 kb on + strand at 437.703 kb on + strand at 437.704 kb on - strand at 437.704 kb on - strand at 437.704 kb on - strand at 437.704 kb on - strand at 437.704 kb on - strand at 437.704 kb on - strand at 437.704 kb on - strand at 437.704 kb on - strand at 437.704 kb on - strand at 437.705 kb on + strand at 437.705 kb on + strand at 437.705 kb on + strand at 437.705 kb on + strand at 437.705 kb on + strand at 437.705 kb on + strand at 437.705 kb on + strand at 437.705 kb on + strand at 437.705 kb on + strand at 437.706 kb on - strand at 437.706 kb on - strand at 437.706 kb on - strand at 437.706 kb on - strand at 438.012 kb on + strand, within MPMX19_05719 at 438.012 kb on + strand, within MPMX19_05719 at 438.013 kb on - strand, within MPMX19_05719 at 438.013 kb on - strand, within MPMX19_05719 at 438.013 kb on - strand, within MPMX19_05719 at 438.556 kb on + strand at 438.556 kb on + strand at 438.556 kb on + strand at 438.556 kb on + strand at 438.556 kb on + strand at 438.557 kb on - strand at 438.557 kb on - strand at 438.557 kb on - strand at 438.557 kb on - strand at 438.557 kb on - strand at 438.557 kb on - strand at 438.557 kb on - strand at 438.595 kb on + strand at 438.595 kb on + strand at 438.595 kb on + strand at 438.595 kb on + strand at 438.595 kb on + strand at 438.595 kb on + strand at 438.595 kb on + strand at 438.595 kb on + strand at 438.595 kb on + strand at 438.595 kb on + strand at 438.595 kb on + strand at 438.595 kb on + strand at 438.595 kb on + strand at 438.596 kb on - strand at 438.596 kb on - strand at 438.596 kb on - strand at 438.596 kb on - strand at 438.596 kb on - strand at 438.596 kb on - strand at 438.596 kb on - strand at 438.596 kb on - strand at 438.596 kb on - strand at 438.596 kb on - strand at 438.596 kb on - strand at 438.596 kb on - strand at 438.596 kb on - strand at 438.596 kb on - strand at 438.596 kb on - strand at 438.612 kb on + strand at 438.612 kb on + strand at 438.612 kb on + strand at 438.612 kb on + strand at 438.612 kb on + strand at 438.613 kb on - strand at 438.613 kb on - strand at 438.613 kb on - strand at 438.613 kb on - strand at 438.613 kb on - strand at 438.616 kb on + strand at 438.616 kb on + strand at 438.616 kb on + strand at 438.616 kb on + strand at 438.616 kb on + strand at 438.616 kb on + strand at 438.617 kb on - strand at 438.617 kb on - strand at 438.617 kb on - strand at 438.617 kb on - strand at 438.617 kb on - strand at 438.617 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 436,006 + -1.6 436,006 + -0.4 436,006 + -1.1 436,006 + -0.1 436,006 + -0.5 436,006 + -1.4 436,006 + -0.9 436,006 + +0.2 436,006 + -1.1 436,007 - -0.2 436,007 - -0.9 436,007 - +0.0 436,007 - -1.1 436,007 - +0.6 436,007 - +0.1 436,007 - +2.6 436,007 - -0.7 436,007 - +1.7 436,007 - -0.1 436,007 - -0.2 436,007 - -0.1 436,007 - +0.4 436,007 - -0.8 436,007 - -0.0 436,007 - +0.9 436,007 - +0.5 436,007 - -0.6 436,007 - -1.1 436,007 - -1.1 436,007 - -1.4 436,009 + -2.2 436,009 + -0.2 436,009 + -1.4 436,009 + +0.3 436,010 - -2.8 436,010 - -1.5 436,010 - -2.2 436,010 - +1.3 436,010 - +0.1 436,010 - -1.6 436,010 - -0.4 436,341 + MPMX19_05717 0.36 -0.9 436,341 + MPMX19_05717 0.36 +1.1 436,341 + MPMX19_05717 0.36 +1.1 436,341 + MPMX19_05717 0.36 -1.3 436,341 + MPMX19_05717 0.36 +0.4 436,341 + MPMX19_05717 0.36 -0.5 436,341 + MPMX19_05717 0.36 +0.4 436,341 + MPMX19_05717 0.36 -0.2 436,342 - MPMX19_05717 0.36 -0.5 436,342 - MPMX19_05717 0.36 -0.8 436,342 - MPMX19_05717 0.36 -1.2 436,342 - MPMX19_05717 0.36 -0.2 436,342 - MPMX19_05717 0.36 -0.2 436,342 - MPMX19_05717 0.36 -0.5 436,531 + MPMX19_05717 0.58 -0.7 436,531 + MPMX19_05717 0.58 +0.7 436,531 + MPMX19_05717 0.58 -0.2 436,531 + MPMX19_05717 0.58 -1.7 436,531 + MPMX19_05717 0.58 -0.3 436,532 - MPMX19_05717 0.59 -0.1 436,532 - MPMX19_05717 0.59 -1.4 436,532 - MPMX19_05717 0.59 -1.5 436,532 - MPMX19_05717 0.59 +0.1 436,532 - MPMX19_05717 0.59 +0.1 436,532 - MPMX19_05717 0.59 +0.0 436,980 + +1.1 436,980 + +0.4 436,981 - -0.8 436,981 - +2.1 436,994 - +0.2 437,052 + MPMX19_05718 0.10 -0.8 437,052 + MPMX19_05718 0.10 -0.2 437,052 + MPMX19_05718 0.10 +0.5 437,052 + MPMX19_05718 0.10 -0.4 437,052 + MPMX19_05718 0.10 -0.5 437,052 + MPMX19_05718 0.10 +0.6 437,052 + MPMX19_05718 0.10 -0.4 437,052 + MPMX19_05718 0.10 -0.3 437,052 + MPMX19_05718 0.10 -1.2 437,052 + MPMX19_05718 0.10 +0.8 437,052 + MPMX19_05718 0.10 -0.1 437,052 + MPMX19_05718 0.10 -0.5 437,052 + MPMX19_05718 0.10 -1.0 437,052 + MPMX19_05718 0.10 -0.3 437,052 + MPMX19_05718 0.10 -1.5 437,052 + MPMX19_05718 0.10 +0.5 437,053 - MPMX19_05718 0.10 +0.2 437,053 - MPMX19_05718 0.10 +0.3 437,053 - MPMX19_05718 0.10 -1.0 437,053 - MPMX19_05718 0.10 +1.5 437,053 - MPMX19_05718 0.10 +0.7 437,053 - MPMX19_05718 0.10 -0.8 437,053 - MPMX19_05718 0.10 +0.4 437,053 - MPMX19_05718 0.10 +0.3 437,053 - MPMX19_05718 0.10 -0.7 437,053 - MPMX19_05718 0.10 -1.4 437,053 - MPMX19_05718 0.10 -1.5 437,053 - MPMX19_05718 0.10 -0.5 437,053 - MPMX19_05718 0.10 -1.2 437,053 - MPMX19_05718 0.10 -0.9 437,053 - MPMX19_05718 0.10 -1.3 437,053 - MPMX19_05718 0.10 -1.1 437,076 + MPMX19_05718 0.14 +1.3 437,076 + MPMX19_05718 0.14 -0.5 437,077 - MPMX19_05718 0.14 +0.5 437,077 - MPMX19_05718 0.14 +0.2 437,077 - MPMX19_05718 0.14 -1.1 437,077 - MPMX19_05718 0.14 +0.1 437,077 - MPMX19_05718 0.14 -0.3 437,077 - MPMX19_05718 0.14 -1.2 437,703 + -1.5 437,703 + -0.7 437,703 + -1.5 437,703 + -0.1 437,703 + -0.9 437,703 + -3.1 437,704 - +0.3 437,704 - -1.5 437,704 - +1.5 437,704 - -0.4 437,704 - +0.1 437,704 - -0.6 437,704 - +0.3 437,704 - -0.7 437,704 - -1.3 437,705 + -0.1 437,705 + -1.1 437,705 + -0.9 437,705 + -0.8 437,705 + -0.2 437,705 + -1.7 437,705 + +0.7 437,705 + +1.9 437,705 + -0.2 437,706 - -0.4 437,706 - +0.8 437,706 - -0.0 437,706 - -2.4 438,012 + MPMX19_05719 0.27 -1.5 438,012 + MPMX19_05719 0.27 -0.1 438,013 - MPMX19_05719 0.27 -0.1 438,013 - MPMX19_05719 0.27 +0.5 438,013 - MPMX19_05719 0.27 -1.4 438,556 + +0.1 438,556 + -0.1 438,556 + -0.3 438,556 + -0.4 438,556 + -2.2 438,557 - -0.7 438,557 - +1.1 438,557 - -0.4 438,557 - -1.1 438,557 - -0.5 438,557 - +0.4 438,557 - -0.3 438,595 + -0.9 438,595 + -0.9 438,595 + -0.5 438,595 + -0.2 438,595 + +1.1 438,595 + -2.6 438,595 + -0.7 438,595 + -0.2 438,595 + -0.7 438,595 + +1.1 438,595 + +0.3 438,595 + +0.1 438,595 + +0.6 438,596 - -0.5 438,596 - -0.1 438,596 - +0.3 438,596 - +0.8 438,596 - -0.7 438,596 - -0.4 438,596 - +1.1 438,596 - +0.5 438,596 - -0.9 438,596 - -0.6 438,596 - +0.5 438,596 - -0.9 438,596 - -1.4 438,596 - -1.4 438,596 - +0.6 438,612 + -0.5 438,612 + -1.2 438,612 + +0.1 438,612 + -1.4 438,612 + +0.5 438,613 - -0.5 438,613 - -0.9 438,613 - -2.0 438,613 - +0.1 438,613 - +0.1 438,616 + +0.2 438,616 + -0.8 438,616 + -1.5 438,616 + +0.1 438,616 + -0.2 438,616 + -0.7 438,617 - -0.2 438,617 - +0.3 438,617 - +0.5 438,617 - -0.3 438,617 - -1.4 438,617 - +0.0
Or see this region's nucleotide sequence