Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05703 and MPMX19_05704 are separated by 267 nucleotides MPMX19_05704 and MPMX19_05705 are separated by 11 nucleotides MPMX19_05705 and MPMX19_05706 are separated by 401 nucleotides
MPMX19_05703: MPMX19_05703 - Ethanolamine ammonia-lyase heavy chain, at 420,282 to 421,673
_05703
MPMX19_05704: MPMX19_05704 - hypothetical protein, at 421,941 to 422,129
_05704
MPMX19_05705: MPMX19_05705 - hypothetical protein, at 422,141 to 422,929
_05705
MPMX19_05706: MPMX19_05706 - hypothetical protein, at 423,331 to 425,361
_05706
Position (kb) 422
423 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 421.363 kb on + strand, within MPMX19_05703 at 421.363 kb on + strand, within MPMX19_05703 at 421.363 kb on + strand, within MPMX19_05703 at 421.363 kb on + strand, within MPMX19_05703 at 421.363 kb on + strand, within MPMX19_05703 at 421.363 kb on + strand, within MPMX19_05703 at 421.363 kb on + strand, within MPMX19_05703 at 421.363 kb on + strand, within MPMX19_05703 at 421.363 kb on + strand, within MPMX19_05703 at 421.363 kb on + strand, within MPMX19_05703 at 421.363 kb on + strand, within MPMX19_05703 at 421.364 kb on - strand, within MPMX19_05703 at 421.364 kb on - strand, within MPMX19_05703 at 421.364 kb on - strand, within MPMX19_05703 at 421.364 kb on - strand, within MPMX19_05703 at 421.364 kb on - strand, within MPMX19_05703 at 421.364 kb on - strand, within MPMX19_05703 at 421.364 kb on - strand, within MPMX19_05703 at 421.364 kb on - strand, within MPMX19_05703 at 421.471 kb on + strand, within MPMX19_05703 at 421.472 kb on - strand, within MPMX19_05703 at 421.741 kb on + strand at 421.741 kb on + strand at 421.741 kb on + strand at 421.741 kb on + strand at 421.741 kb on + strand at 421.741 kb on + strand at 421.741 kb on + strand at 421.741 kb on + strand at 421.741 kb on + strand at 421.741 kb on + strand at 421.742 kb on - strand at 421.742 kb on - strand at 421.742 kb on - strand at 421.742 kb on - strand at 421.742 kb on - strand at 421.742 kb on - strand at 421.742 kb on - strand at 421.742 kb on - strand at 421.742 kb on - strand at 421.742 kb on - strand at 421.742 kb on - strand at 421.742 kb on - strand at 421.742 kb on - strand at 421.742 kb on - strand at 421.789 kb on + strand at 421.789 kb on + strand at 421.789 kb on + strand at 421.789 kb on + strand at 421.789 kb on + strand at 421.789 kb on + strand at 421.789 kb on + strand at 421.789 kb on + strand at 421.789 kb on + strand at 421.789 kb on + strand at 421.789 kb on + strand at 421.789 kb on + strand at 421.790 kb on - strand at 421.790 kb on - strand at 421.790 kb on - strand at 421.790 kb on - strand at 421.790 kb on - strand at 421.843 kb on + strand at 421.923 kb on + strand at 421.923 kb on + strand at 421.923 kb on + strand at 421.923 kb on + strand at 421.924 kb on - strand at 421.924 kb on - strand at 421.924 kb on - strand at 421.924 kb on - strand at 421.924 kb on - strand at 421.924 kb on - strand at 421.924 kb on - strand at 421.924 kb on - strand at 421.924 kb on - strand at 421.924 kb on - strand at 422.250 kb on - strand, within MPMX19_05705 at 422.289 kb on + strand, within MPMX19_05705 at 422.289 kb on + strand, within MPMX19_05705 at 422.290 kb on - strand, within MPMX19_05705 at 422.292 kb on + strand, within MPMX19_05705 at 422.292 kb on + strand, within MPMX19_05705 at 422.292 kb on + strand, within MPMX19_05705 at 422.292 kb on + strand, within MPMX19_05705 at 422.292 kb on + strand, within MPMX19_05705 at 422.293 kb on - strand, within MPMX19_05705 at 422.293 kb on - strand, within MPMX19_05705 at 422.293 kb on - strand, within MPMX19_05705 at 422.293 kb on - strand, within MPMX19_05705 at 422.293 kb on - strand, within MPMX19_05705 at 422.293 kb on - strand, within MPMX19_05705 at 422.499 kb on + strand, within MPMX19_05705 at 422.499 kb on + strand, within MPMX19_05705 at 422.499 kb on + strand, within MPMX19_05705 at 422.500 kb on - strand, within MPMX19_05705 at 422.500 kb on - strand, within MPMX19_05705 at 422.649 kb on + strand, within MPMX19_05705 at 422.649 kb on + strand, within MPMX19_05705 at 422.649 kb on + strand, within MPMX19_05705 at 422.649 kb on + strand, within MPMX19_05705 at 422.649 kb on + strand, within MPMX19_05705 at 422.649 kb on + strand, within MPMX19_05705 at 422.649 kb on + strand, within MPMX19_05705 at 422.649 kb on + strand, within MPMX19_05705 at 422.649 kb on + strand, within MPMX19_05705 at 422.649 kb on + strand, within MPMX19_05705 at 422.649 kb on + strand, within MPMX19_05705 at 422.649 kb on + strand, within MPMX19_05705 at 422.649 kb on + strand, within MPMX19_05705 at 422.649 kb on + strand, within MPMX19_05705 at 422.649 kb on + strand, within MPMX19_05705 at 422.649 kb on + strand, within MPMX19_05705 at 422.649 kb on + strand, within MPMX19_05705 at 422.649 kb on + strand, within MPMX19_05705 at 422.649 kb on + strand, within MPMX19_05705 at 422.649 kb on + strand, within MPMX19_05705 at 422.650 kb on - strand, within MPMX19_05705 at 422.650 kb on - strand, within MPMX19_05705 at 422.650 kb on - strand, within MPMX19_05705 at 422.650 kb on - strand, within MPMX19_05705 at 422.650 kb on - strand, within MPMX19_05705 at 422.650 kb on - strand, within MPMX19_05705 at 422.650 kb on - strand, within MPMX19_05705 at 422.650 kb on - strand, within MPMX19_05705 at 422.650 kb on - strand, within MPMX19_05705 at 422.650 kb on - strand, within MPMX19_05705 at 422.650 kb on - strand, within MPMX19_05705 at 422.650 kb on - strand, within MPMX19_05705 at 422.650 kb on - strand, within MPMX19_05705 at 422.724 kb on + strand, within MPMX19_05705 at 422.724 kb on + strand, within MPMX19_05705 at 422.724 kb on + strand, within MPMX19_05705 at 422.725 kb on - strand, within MPMX19_05705 at 422.725 kb on - strand, within MPMX19_05705 at 422.725 kb on - strand, within MPMX19_05705 at 422.725 kb on - strand, within MPMX19_05705 at 422.725 kb on - strand, within MPMX19_05705 at 422.725 kb on - strand, within MPMX19_05705 at 422.795 kb on + strand, within MPMX19_05705 at 422.795 kb on + strand, within MPMX19_05705 at 422.795 kb on + strand, within MPMX19_05705 at 422.795 kb on + strand, within MPMX19_05705 at 422.795 kb on + strand, within MPMX19_05705 at 422.795 kb on + strand, within MPMX19_05705 at 422.795 kb on + strand, within MPMX19_05705 at 422.795 kb on + strand, within MPMX19_05705 at 422.795 kb on + strand, within MPMX19_05705 at 422.795 kb on + strand, within MPMX19_05705 at 422.796 kb on - strand, within MPMX19_05705 at 422.796 kb on - strand, within MPMX19_05705 at 422.796 kb on - strand, within MPMX19_05705 at 422.846 kb on + strand, within MPMX19_05705 at 422.846 kb on + strand, within MPMX19_05705 at 422.846 kb on + strand, within MPMX19_05705 at 422.846 kb on + strand, within MPMX19_05705 at 422.846 kb on + strand, within MPMX19_05705 at 422.846 kb on + strand, within MPMX19_05705 at 422.846 kb on + strand, within MPMX19_05705 at 422.846 kb on + strand, within MPMX19_05705 at 422.846 kb on + strand, within MPMX19_05705 at 422.847 kb on - strand, within MPMX19_05705 at 422.847 kb on - strand, within MPMX19_05705 at 422.847 kb on - strand, within MPMX19_05705 at 422.847 kb on - strand, within MPMX19_05705 at 422.847 kb on - strand, within MPMX19_05705 at 422.847 kb on - strand, within MPMX19_05705 at 422.847 kb on - strand, within MPMX19_05705 at 422.847 kb on - strand, within MPMX19_05705 at 422.847 kb on - strand, within MPMX19_05705 at 422.919 kb on + strand at 422.919 kb on + strand at 422.919 kb on + strand at 422.919 kb on + strand at 422.919 kb on + strand at 422.919 kb on + strand at 422.919 kb on + strand at 422.920 kb on - strand at 422.920 kb on - strand at 422.929 kb on + strand at 422.929 kb on + strand at 422.929 kb on + strand at 422.929 kb on + strand at 422.929 kb on + strand at 422.929 kb on + strand at 422.929 kb on + strand at 422.930 kb on - strand at 422.930 kb on - strand at 422.930 kb on - strand at 422.930 kb on - strand at 422.930 kb on - strand at 422.930 kb on - strand at 422.930 kb on - strand at 422.930 kb on - strand at 422.930 kb on - strand at 422.930 kb on - strand at 423.024 kb on + strand at 423.024 kb on + strand at 423.024 kb on + strand at 423.024 kb on + strand at 423.024 kb on + strand at 423.025 kb on - strand at 423.025 kb on - strand at 423.025 kb on - strand at 423.030 kb on + strand at 423.030 kb on + strand at 423.030 kb on + strand at 423.030 kb on + strand at 423.030 kb on + strand at 423.031 kb on - strand at 423.031 kb on - strand at 423.031 kb on - strand at 423.031 kb on - strand at 423.031 kb on - strand at 423.031 kb on - strand at 423.056 kb on + strand at 423.056 kb on + strand at 423.056 kb on + strand at 423.057 kb on - strand at 423.081 kb on + strand at 423.081 kb on + strand at 423.081 kb on + strand at 423.081 kb on + strand at 423.081 kb on + strand at 423.081 kb on + strand at 423.081 kb on + strand at 423.081 kb on + strand at 423.081 kb on + strand at 423.082 kb on - strand at 423.082 kb on - strand at 423.082 kb on - strand at 423.082 kb on - strand at 423.082 kb on - strand at 423.082 kb on - strand at 423.082 kb on - strand at 423.082 kb on - strand at 423.082 kb on - strand at 423.082 kb on - strand at 423.082 kb on - strand at 423.131 kb on - strand at 423.131 kb on - strand at 423.135 kb on + strand at 423.135 kb on + strand at 423.135 kb on + strand at 423.136 kb on - strand at 423.136 kb on - strand at 423.136 kb on - strand at 423.150 kb on - strand at 423.459 kb on + strand at 423.459 kb on + strand at 423.459 kb on + strand at 423.459 kb on + strand at 423.898 kb on + strand, within MPMX19_05706 at 423.898 kb on + strand, within MPMX19_05706 at 423.898 kb on + strand, within MPMX19_05706 at 423.898 kb on + strand, within MPMX19_05706 at 423.898 kb on + strand, within MPMX19_05706 at 423.898 kb on + strand, within MPMX19_05706 at 423.898 kb on + strand, within MPMX19_05706 at 423.898 kb on + strand, within MPMX19_05706 at 423.898 kb on + strand, within MPMX19_05706 at 423.898 kb on + strand, within MPMX19_05706 at 423.898 kb on + strand, within MPMX19_05706 at 423.899 kb on - strand, within MPMX19_05706 at 423.899 kb on - strand, within MPMX19_05706 at 423.899 kb on - strand, within MPMX19_05706 at 423.899 kb on - strand, within MPMX19_05706 at 423.899 kb on - strand, within MPMX19_05706 at 423.899 kb on - strand, within MPMX19_05706 at 423.899 kb on - strand, within MPMX19_05706 at 423.899 kb on - strand, within MPMX19_05706 at 423.899 kb on - strand, within MPMX19_05706
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 421,363 + MPMX19_05703 0.78 -1.6 421,363 + MPMX19_05703 0.78 -0.5 421,363 + MPMX19_05703 0.78 +0.1 421,363 + MPMX19_05703 0.78 +1.5 421,363 + MPMX19_05703 0.78 -0.8 421,363 + MPMX19_05703 0.78 -0.6 421,363 + MPMX19_05703 0.78 -0.9 421,363 + MPMX19_05703 0.78 -0.9 421,363 + MPMX19_05703 0.78 +0.4 421,363 + MPMX19_05703 0.78 -0.7 421,363 + MPMX19_05703 0.78 +0.1 421,364 - MPMX19_05703 0.78 -2.3 421,364 - MPMX19_05703 0.78 -0.7 421,364 - MPMX19_05703 0.78 -1.2 421,364 - MPMX19_05703 0.78 -0.2 421,364 - MPMX19_05703 0.78 +0.5 421,364 - MPMX19_05703 0.78 +0.1 421,364 - MPMX19_05703 0.78 +0.4 421,364 - MPMX19_05703 0.78 -0.6 421,471 + MPMX19_05703 0.85 -0.9 421,472 - MPMX19_05703 0.85 -1.7 421,741 + +1.4 421,741 + -0.2 421,741 + -0.1 421,741 + -0.1 421,741 + -0.9 421,741 + -0.4 421,741 + -1.6 421,741 + +0.4 421,741 + -1.1 421,741 + -0.5 421,742 - -0.8 421,742 - -0.1 421,742 - -0.9 421,742 - -2.3 421,742 - -0.3 421,742 - -0.7 421,742 - -0.5 421,742 - +0.6 421,742 - -1.2 421,742 - -0.7 421,742 - -0.4 421,742 - -0.1 421,742 - -0.2 421,742 - -1.5 421,789 + -2.4 421,789 + -0.5 421,789 + -1.0 421,789 + -0.3 421,789 + -0.5 421,789 + -1.5 421,789 + +0.0 421,789 + -0.4 421,789 + -0.9 421,789 + -0.3 421,789 + +0.5 421,789 + +0.2 421,790 - -1.8 421,790 - +1.4 421,790 - -1.0 421,790 - -0.4 421,790 - +0.3 421,843 + -1.7 421,923 + -0.6 421,923 + -1.1 421,923 + +1.4 421,923 + +0.9 421,924 - -3.3 421,924 - -0.3 421,924 - -0.7 421,924 - -0.5 421,924 - -0.5 421,924 - +0.7 421,924 - -2.1 421,924 - -1.5 421,924 - -0.1 421,924 - -1.2 422,250 - MPMX19_05705 0.14 +0.7 422,289 + MPMX19_05705 0.19 +0.6 422,289 + MPMX19_05705 0.19 +0.1 422,290 - MPMX19_05705 0.19 -0.4 422,292 + MPMX19_05705 0.19 -1.4 422,292 + MPMX19_05705 0.19 -1.2 422,292 + MPMX19_05705 0.19 -0.1 422,292 + MPMX19_05705 0.19 +0.6 422,292 + MPMX19_05705 0.19 -0.9 422,293 - MPMX19_05705 0.19 +0.3 422,293 - MPMX19_05705 0.19 -1.4 422,293 - MPMX19_05705 0.19 +0.9 422,293 - MPMX19_05705 0.19 -0.5 422,293 - MPMX19_05705 0.19 +0.6 422,293 - MPMX19_05705 0.19 -0.4 422,499 + MPMX19_05705 0.45 -0.2 422,499 + MPMX19_05705 0.45 -1.1 422,499 + MPMX19_05705 0.45 +0.1 422,500 - MPMX19_05705 0.46 +1.7 422,500 - MPMX19_05705 0.46 -0.4 422,649 + MPMX19_05705 0.64 -2.1 422,649 + MPMX19_05705 0.64 -0.4 422,649 + MPMX19_05705 0.64 -2.0 422,649 + MPMX19_05705 0.64 -0.3 422,649 + MPMX19_05705 0.64 +0.5 422,649 + MPMX19_05705 0.64 -1.0 422,649 + MPMX19_05705 0.64 +0.4 422,649 + MPMX19_05705 0.64 -1.4 422,649 + MPMX19_05705 0.64 -0.9 422,649 + MPMX19_05705 0.64 -0.7 422,649 + MPMX19_05705 0.64 -1.4 422,649 + MPMX19_05705 0.64 -0.6 422,649 + MPMX19_05705 0.64 -0.2 422,649 + MPMX19_05705 0.64 +0.2 422,649 + MPMX19_05705 0.64 -0.7 422,649 + MPMX19_05705 0.64 -0.4 422,649 + MPMX19_05705 0.64 +0.5 422,649 + MPMX19_05705 0.64 -0.4 422,649 + MPMX19_05705 0.64 -0.7 422,649 + MPMX19_05705 0.64 -0.8 422,650 - MPMX19_05705 0.65 +0.0 422,650 - MPMX19_05705 0.65 -0.2 422,650 - MPMX19_05705 0.65 +1.3 422,650 - MPMX19_05705 0.65 -0.8 422,650 - MPMX19_05705 0.65 -0.4 422,650 - MPMX19_05705 0.65 -0.7 422,650 - MPMX19_05705 0.65 +1.8 422,650 - MPMX19_05705 0.65 -0.9 422,650 - MPMX19_05705 0.65 +0.8 422,650 - MPMX19_05705 0.65 +0.3 422,650 - MPMX19_05705 0.65 -0.2 422,650 - MPMX19_05705 0.65 -0.9 422,650 - MPMX19_05705 0.65 -1.0 422,724 + MPMX19_05705 0.74 -0.4 422,724 + MPMX19_05705 0.74 -0.6 422,724 + MPMX19_05705 0.74 -0.3 422,725 - MPMX19_05705 0.74 -0.4 422,725 - MPMX19_05705 0.74 -0.0 422,725 - MPMX19_05705 0.74 -0.2 422,725 - MPMX19_05705 0.74 -1.0 422,725 - MPMX19_05705 0.74 -1.4 422,725 - MPMX19_05705 0.74 -0.1 422,795 + MPMX19_05705 0.83 +0.4 422,795 + MPMX19_05705 0.83 +0.0 422,795 + MPMX19_05705 0.83 -1.4 422,795 + MPMX19_05705 0.83 -1.6 422,795 + MPMX19_05705 0.83 -1.5 422,795 + MPMX19_05705 0.83 -0.4 422,795 + MPMX19_05705 0.83 -1.6 422,795 + MPMX19_05705 0.83 +0.9 422,795 + MPMX19_05705 0.83 -0.4 422,795 + MPMX19_05705 0.83 -0.5 422,796 - MPMX19_05705 0.83 -0.1 422,796 - MPMX19_05705 0.83 -0.9 422,796 - MPMX19_05705 0.83 -1.9 422,846 + MPMX19_05705 0.89 -0.5 422,846 + MPMX19_05705 0.89 -0.3 422,846 + MPMX19_05705 0.89 +0.1 422,846 + MPMX19_05705 0.89 -1.6 422,846 + MPMX19_05705 0.89 -1.1 422,846 + MPMX19_05705 0.89 +0.0 422,846 + MPMX19_05705 0.89 -1.4 422,846 + MPMX19_05705 0.89 -1.1 422,846 + MPMX19_05705 0.89 -1.4 422,847 - MPMX19_05705 0.89 +0.5 422,847 - MPMX19_05705 0.89 -1.3 422,847 - MPMX19_05705 0.89 +0.9 422,847 - MPMX19_05705 0.89 -2.9 422,847 - MPMX19_05705 0.89 -0.2 422,847 - MPMX19_05705 0.89 -0.4 422,847 - MPMX19_05705 0.89 -1.2 422,847 - MPMX19_05705 0.89 -0.3 422,847 - MPMX19_05705 0.89 -2.6 422,919 + +1.3 422,919 + -0.5 422,919 + -0.9 422,919 + +0.1 422,919 + -1.5 422,919 + -0.8 422,919 + -0.2 422,920 - -0.9 422,920 - -0.5 422,929 + -0.5 422,929 + +0.3 422,929 + -1.3 422,929 + -0.0 422,929 + -2.1 422,929 + +0.4 422,929 + -1.3 422,930 - -1.1 422,930 - +1.0 422,930 - -1.1 422,930 - -0.1 422,930 - +0.5 422,930 - -0.2 422,930 - -0.8 422,930 - -0.9 422,930 - -0.7 422,930 - +1.3 423,024 + -0.9 423,024 + +1.1 423,024 + -0.9 423,024 + -1.6 423,024 + +0.1 423,025 - -0.0 423,025 - -0.0 423,025 - +0.0 423,030 + -0.1 423,030 + -0.5 423,030 + +0.3 423,030 + -0.8 423,030 + -1.4 423,031 - +1.6 423,031 - -0.8 423,031 - +1.1 423,031 - -0.7 423,031 - -0.9 423,031 - +0.5 423,056 + -1.0 423,056 + +0.8 423,056 + -0.0 423,057 - -0.2 423,081 + +0.1 423,081 + +0.5 423,081 + +1.5 423,081 + -1.1 423,081 + +1.0 423,081 + +1.1 423,081 + +0.8 423,081 + +0.8 423,081 + +0.8 423,082 - -0.3 423,082 - -1.4 423,082 - -1.8 423,082 - -0.2 423,082 - -0.6 423,082 - -0.9 423,082 - -0.2 423,082 - -0.9 423,082 - -0.9 423,082 - -1.9 423,082 - -1.1 423,131 - -0.3 423,131 - +0.4 423,135 + -1.4 423,135 + -0.2 423,135 + +0.8 423,136 - +0.9 423,136 - -1.1 423,136 - -0.7 423,150 - +1.1 423,459 + -1.3 423,459 + -1.4 423,459 + -0.2 423,459 + +0.5 423,898 + MPMX19_05706 0.28 +1.0 423,898 + MPMX19_05706 0.28 -0.4 423,898 + MPMX19_05706 0.28 -1.8 423,898 + MPMX19_05706 0.28 -0.9 423,898 + MPMX19_05706 0.28 +0.3 423,898 + MPMX19_05706 0.28 +1.5 423,898 + MPMX19_05706 0.28 +0.1 423,898 + MPMX19_05706 0.28 -1.1 423,898 + MPMX19_05706 0.28 -0.4 423,898 + MPMX19_05706 0.28 +0.6 423,898 + MPMX19_05706 0.28 -0.7 423,899 - MPMX19_05706 0.28 +0.0 423,899 - MPMX19_05706 0.28 +0.7 423,899 - MPMX19_05706 0.28 -0.4 423,899 - MPMX19_05706 0.28 -0.3 423,899 - MPMX19_05706 0.28 -0.9 423,899 - MPMX19_05706 0.28 +0.7 423,899 - MPMX19_05706 0.28 -0.0 423,899 - MPMX19_05706 0.28 -1.4 423,899 - MPMX19_05706 0.28 +0.6
Or see this region's nucleotide sequence