Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05653 and MPMX19_05654 are separated by 74 nucleotides MPMX19_05654 and MPMX19_05655 are separated by 107 nucleotides MPMX19_05655 and MPMX19_05656 overlap by 8 nucleotides
MPMX19_05653: MPMX19_05653 - Leucine-responsive regulatory protein, at 370,911 to 371,390
_05653
MPMX19_05654: MPMX19_05654 - hypothetical protein, at 371,465 to 372,154
_05654
MPMX19_05655: MPMX19_05655 - hypothetical protein, at 372,262 to 372,948
_05655
MPMX19_05656: MPMX19_05656 - HTH-type transcriptional activator RhaR, at 372,941 to 373,690
_05656
Position (kb) 372
373 Strain fitness (log2 ratio) -2
-1
0
1 at 371.432 kb on + strand at 371.557 kb on + strand, within MPMX19_05654 at 371.557 kb on + strand, within MPMX19_05654 at 371.558 kb on - strand, within MPMX19_05654 at 371.558 kb on - strand, within MPMX19_05654 at 371.558 kb on - strand, within MPMX19_05654 at 371.558 kb on - strand, within MPMX19_05654 at 371.558 kb on - strand, within MPMX19_05654 at 371.576 kb on + strand, within MPMX19_05654 at 371.576 kb on + strand, within MPMX19_05654 at 371.576 kb on + strand, within MPMX19_05654 at 371.577 kb on - strand, within MPMX19_05654 at 371.577 kb on - strand, within MPMX19_05654 at 371.963 kb on + strand, within MPMX19_05654 at 371.963 kb on + strand, within MPMX19_05654 at 371.963 kb on + strand, within MPMX19_05654 at 371.963 kb on + strand, within MPMX19_05654 at 371.963 kb on + strand, within MPMX19_05654 at 371.963 kb on + strand, within MPMX19_05654 at 371.963 kb on + strand, within MPMX19_05654 at 371.963 kb on + strand, within MPMX19_05654 at 371.963 kb on + strand, within MPMX19_05654 at 371.963 kb on + strand, within MPMX19_05654 at 371.963 kb on + strand, within MPMX19_05654 at 371.964 kb on - strand, within MPMX19_05654 at 371.964 kb on - strand, within MPMX19_05654 at 371.964 kb on - strand, within MPMX19_05654 at 371.964 kb on - strand, within MPMX19_05654 at 371.964 kb on - strand, within MPMX19_05654 at 371.964 kb on - strand, within MPMX19_05654 at 371.964 kb on - strand, within MPMX19_05654 at 371.964 kb on - strand, within MPMX19_05654 at 371.964 kb on - strand, within MPMX19_05654 at 371.964 kb on - strand, within MPMX19_05654 at 371.964 kb on - strand, within MPMX19_05654 at 372.014 kb on + strand, within MPMX19_05654 at 372.014 kb on + strand, within MPMX19_05654 at 372.014 kb on + strand, within MPMX19_05654 at 372.015 kb on - strand, within MPMX19_05654 at 372.015 kb on - strand, within MPMX19_05654 at 372.015 kb on - strand, within MPMX19_05654 at 372.042 kb on + strand, within MPMX19_05654 at 372.042 kb on + strand, within MPMX19_05654 at 372.042 kb on + strand, within MPMX19_05654 at 372.043 kb on - strand, within MPMX19_05654 at 372.043 kb on - strand, within MPMX19_05654 at 372.098 kb on + strand at 372.098 kb on + strand at 372.098 kb on + strand at 372.098 kb on + strand at 372.098 kb on + strand at 372.098 kb on + strand at 372.098 kb on + strand at 372.098 kb on + strand at 372.098 kb on + strand at 372.098 kb on + strand at 372.099 kb on - strand at 372.099 kb on - strand at 372.099 kb on - strand at 372.099 kb on - strand at 372.099 kb on - strand at 372.099 kb on - strand at 372.099 kb on - strand at 372.099 kb on - strand at 372.099 kb on - strand at 372.099 kb on - strand at 372.099 kb on - strand at 372.099 kb on - strand at 372.104 kb on + strand at 372.104 kb on + strand at 372.104 kb on + strand at 372.104 kb on + strand at 372.105 kb on - strand at 372.523 kb on + strand, within MPMX19_05655 at 372.523 kb on + strand, within MPMX19_05655 at 372.523 kb on + strand, within MPMX19_05655 at 372.523 kb on + strand, within MPMX19_05655 at 372.523 kb on + strand, within MPMX19_05655 at 372.523 kb on + strand, within MPMX19_05655 at 372.523 kb on + strand, within MPMX19_05655 at 372.523 kb on + strand, within MPMX19_05655 at 372.523 kb on + strand, within MPMX19_05655 at 372.523 kb on + strand, within MPMX19_05655 at 372.523 kb on + strand, within MPMX19_05655 at 372.523 kb on + strand, within MPMX19_05655 at 372.523 kb on + strand, within MPMX19_05655 at 372.523 kb on + strand, within MPMX19_05655 at 372.523 kb on + strand, within MPMX19_05655 at 372.523 kb on + strand, within MPMX19_05655 at 372.523 kb on + strand, within MPMX19_05655 at 372.523 kb on + strand, within MPMX19_05655 at 372.523 kb on + strand, within MPMX19_05655 at 372.524 kb on - strand, within MPMX19_05655 at 372.524 kb on - strand, within MPMX19_05655 at 372.524 kb on - strand, within MPMX19_05655 at 372.524 kb on - strand, within MPMX19_05655 at 372.524 kb on - strand, within MPMX19_05655 at 372.524 kb on - strand, within MPMX19_05655 at 372.524 kb on - strand, within MPMX19_05655 at 372.524 kb on - strand, within MPMX19_05655 at 372.524 kb on - strand, within MPMX19_05655 at 372.524 kb on - strand, within MPMX19_05655 at 372.524 kb on - strand, within MPMX19_05655 at 372.524 kb on - strand, within MPMX19_05655 at 372.524 kb on - strand, within MPMX19_05655 at 372.524 kb on - strand, within MPMX19_05655 at 372.784 kb on + strand, within MPMX19_05655 at 372.784 kb on + strand, within MPMX19_05655 at 372.784 kb on + strand, within MPMX19_05655 at 372.784 kb on + strand, within MPMX19_05655 at 372.784 kb on + strand, within MPMX19_05655 at 372.784 kb on + strand, within MPMX19_05655 at 372.784 kb on + strand, within MPMX19_05655 at 372.784 kb on + strand, within MPMX19_05655 at 372.784 kb on + strand, within MPMX19_05655 at 372.784 kb on + strand, within MPMX19_05655 at 372.784 kb on + strand, within MPMX19_05655 at 372.784 kb on + strand, within MPMX19_05655 at 372.784 kb on + strand, within MPMX19_05655 at 372.784 kb on + strand, within MPMX19_05655 at 372.784 kb on + strand, within MPMX19_05655 at 372.784 kb on + strand, within MPMX19_05655 at 372.784 kb on + strand, within MPMX19_05655 at 372.784 kb on + strand, within MPMX19_05655 at 372.784 kb on + strand, within MPMX19_05655 at 372.784 kb on + strand, within MPMX19_05655 at 372.785 kb on - strand, within MPMX19_05655 at 372.785 kb on - strand, within MPMX19_05655 at 372.785 kb on - strand, within MPMX19_05655 at 372.785 kb on - strand, within MPMX19_05655 at 372.785 kb on - strand, within MPMX19_05655 at 372.785 kb on - strand, within MPMX19_05655 at 372.785 kb on - strand, within MPMX19_05655 at 372.785 kb on - strand, within MPMX19_05655 at 372.785 kb on - strand, within MPMX19_05655 at 372.785 kb on - strand, within MPMX19_05655 at 372.785 kb on - strand, within MPMX19_05655 at 372.785 kb on - strand, within MPMX19_05655 at 372.785 kb on - strand, within MPMX19_05655 at 372.785 kb on - strand, within MPMX19_05655 at 372.785 kb on - strand, within MPMX19_05655 at 372.785 kb on - strand, within MPMX19_05655 at 372.942 kb on + strand at 372.942 kb on + strand at 372.942 kb on + strand at 372.943 kb on - strand at 372.943 kb on - strand at 372.946 kb on + strand at 372.946 kb on + strand at 372.946 kb on + strand at 372.946 kb on + strand at 372.946 kb on + strand at 372.946 kb on + strand at 372.946 kb on + strand at 372.946 kb on + strand at 372.946 kb on + strand at 372.946 kb on + strand at 372.946 kb on + strand at 372.946 kb on + strand at 372.946 kb on + strand at 372.947 kb on - strand at 372.947 kb on - strand at 372.947 kb on - strand at 372.947 kb on - strand at 372.947 kb on - strand at 372.947 kb on - strand at 372.947 kb on - strand at 372.947 kb on - strand at 372.947 kb on - strand at 372.947 kb on - strand at 372.947 kb on - strand at 373.268 kb on + strand, within MPMX19_05656 at 373.374 kb on + strand, within MPMX19_05656 at 373.374 kb on + strand, within MPMX19_05656 at 373.374 kb on + strand, within MPMX19_05656 at 373.374 kb on + strand, within MPMX19_05656 at 373.374 kb on + strand, within MPMX19_05656 at 373.375 kb on - strand, within MPMX19_05656 at 373.650 kb on + strand at 373.650 kb on + strand at 373.650 kb on + strand at 373.650 kb on + strand at 373.650 kb on + strand at 373.651 kb on - strand at 373.651 kb on - strand at 373.651 kb on - strand at 373.651 kb on - strand at 373.651 kb on - strand at 373.729 kb on + strand at 373.729 kb on + strand at 373.729 kb on + strand at 373.729 kb on + strand at 373.729 kb on + strand at 373.729 kb on + strand at 373.729 kb on + strand at 373.730 kb on - strand at 373.785 kb on + strand at 373.848 kb on - strand at 373.868 kb on + strand at 373.903 kb on - strand at 373.942 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 371,432 + -0.5 371,557 + MPMX19_05654 0.13 -0.5 371,557 + MPMX19_05654 0.13 +0.4 371,558 - MPMX19_05654 0.13 -0.8 371,558 - MPMX19_05654 0.13 -0.9 371,558 - MPMX19_05654 0.13 -0.1 371,558 - MPMX19_05654 0.13 -1.0 371,558 - MPMX19_05654 0.13 -1.0 371,576 + MPMX19_05654 0.16 -1.1 371,576 + MPMX19_05654 0.16 -0.7 371,576 + MPMX19_05654 0.16 -0.7 371,577 - MPMX19_05654 0.16 -0.2 371,577 - MPMX19_05654 0.16 -0.4 371,963 + MPMX19_05654 0.72 -1.2 371,963 + MPMX19_05654 0.72 -0.8 371,963 + MPMX19_05654 0.72 +0.1 371,963 + MPMX19_05654 0.72 +0.6 371,963 + MPMX19_05654 0.72 +0.1 371,963 + MPMX19_05654 0.72 -0.3 371,963 + MPMX19_05654 0.72 -1.9 371,963 + MPMX19_05654 0.72 -2.0 371,963 + MPMX19_05654 0.72 +0.5 371,963 + MPMX19_05654 0.72 +0.5 371,963 + MPMX19_05654 0.72 -0.5 371,964 - MPMX19_05654 0.72 -0.6 371,964 - MPMX19_05654 0.72 +1.5 371,964 - MPMX19_05654 0.72 -0.1 371,964 - MPMX19_05654 0.72 -0.2 371,964 - MPMX19_05654 0.72 -0.0 371,964 - MPMX19_05654 0.72 +0.2 371,964 - MPMX19_05654 0.72 +0.9 371,964 - MPMX19_05654 0.72 -0.4 371,964 - MPMX19_05654 0.72 -0.4 371,964 - MPMX19_05654 0.72 -1.5 371,964 - MPMX19_05654 0.72 -0.9 372,014 + MPMX19_05654 0.80 -0.2 372,014 + MPMX19_05654 0.80 +0.5 372,014 + MPMX19_05654 0.80 +0.0 372,015 - MPMX19_05654 0.80 +0.4 372,015 - MPMX19_05654 0.80 -1.7 372,015 - MPMX19_05654 0.80 +0.4 372,042 + MPMX19_05654 0.84 +1.4 372,042 + MPMX19_05654 0.84 +0.3 372,042 + MPMX19_05654 0.84 -0.0 372,043 - MPMX19_05654 0.84 -0.0 372,043 - MPMX19_05654 0.84 +0.4 372,098 + -1.0 372,098 + -0.7 372,098 + +0.1 372,098 + -0.7 372,098 + -0.6 372,098 + -0.1 372,098 + -0.1 372,098 + +0.2 372,098 + -1.1 372,098 + -0.2 372,099 - -0.1 372,099 - -1.8 372,099 - -0.1 372,099 - -0.6 372,099 - -0.3 372,099 - -1.2 372,099 - -1.1 372,099 - +1.6 372,099 - -2.1 372,099 - -0.7 372,099 - -0.5 372,099 - +0.0 372,104 + -2.1 372,104 + -0.8 372,104 + -1.0 372,104 + -1.5 372,105 - +1.4 372,523 + MPMX19_05655 0.38 -1.9 372,523 + MPMX19_05655 0.38 -0.8 372,523 + MPMX19_05655 0.38 +0.8 372,523 + MPMX19_05655 0.38 -0.6 372,523 + MPMX19_05655 0.38 -1.5 372,523 + MPMX19_05655 0.38 -1.5 372,523 + MPMX19_05655 0.38 +1.0 372,523 + MPMX19_05655 0.38 -0.7 372,523 + MPMX19_05655 0.38 -0.3 372,523 + MPMX19_05655 0.38 +0.2 372,523 + MPMX19_05655 0.38 +0.1 372,523 + MPMX19_05655 0.38 +0.9 372,523 + MPMX19_05655 0.38 -0.6 372,523 + MPMX19_05655 0.38 -0.9 372,523 + MPMX19_05655 0.38 -0.1 372,523 + MPMX19_05655 0.38 -0.7 372,523 + MPMX19_05655 0.38 -1.4 372,523 + MPMX19_05655 0.38 +1.1 372,523 + MPMX19_05655 0.38 -0.4 372,524 - MPMX19_05655 0.38 +0.1 372,524 - MPMX19_05655 0.38 -0.5 372,524 - MPMX19_05655 0.38 +0.5 372,524 - MPMX19_05655 0.38 -0.7 372,524 - MPMX19_05655 0.38 -0.2 372,524 - MPMX19_05655 0.38 +0.3 372,524 - MPMX19_05655 0.38 -0.7 372,524 - MPMX19_05655 0.38 -1.1 372,524 - MPMX19_05655 0.38 +0.4 372,524 - MPMX19_05655 0.38 -0.8 372,524 - MPMX19_05655 0.38 +0.4 372,524 - MPMX19_05655 0.38 +1.4 372,524 - MPMX19_05655 0.38 -0.6 372,524 - MPMX19_05655 0.38 +0.4 372,784 + MPMX19_05655 0.76 -2.7 372,784 + MPMX19_05655 0.76 -0.0 372,784 + MPMX19_05655 0.76 -0.1 372,784 + MPMX19_05655 0.76 +0.3 372,784 + MPMX19_05655 0.76 -1.1 372,784 + MPMX19_05655 0.76 -0.7 372,784 + MPMX19_05655 0.76 -1.8 372,784 + MPMX19_05655 0.76 -1.4 372,784 + MPMX19_05655 0.76 -0.2 372,784 + MPMX19_05655 0.76 +0.1 372,784 + MPMX19_05655 0.76 +1.0 372,784 + MPMX19_05655 0.76 +1.1 372,784 + MPMX19_05655 0.76 -1.5 372,784 + MPMX19_05655 0.76 +0.8 372,784 + MPMX19_05655 0.76 +1.1 372,784 + MPMX19_05655 0.76 +0.7 372,784 + MPMX19_05655 0.76 -0.7 372,784 + MPMX19_05655 0.76 -2.1 372,784 + MPMX19_05655 0.76 -1.2 372,784 + MPMX19_05655 0.76 -0.6 372,785 - MPMX19_05655 0.76 -0.4 372,785 - MPMX19_05655 0.76 +0.7 372,785 - MPMX19_05655 0.76 +0.1 372,785 - MPMX19_05655 0.76 -0.9 372,785 - MPMX19_05655 0.76 -0.2 372,785 - MPMX19_05655 0.76 -0.6 372,785 - MPMX19_05655 0.76 -1.4 372,785 - MPMX19_05655 0.76 +0.2 372,785 - MPMX19_05655 0.76 +0.0 372,785 - MPMX19_05655 0.76 -0.1 372,785 - MPMX19_05655 0.76 -0.5 372,785 - MPMX19_05655 0.76 -0.8 372,785 - MPMX19_05655 0.76 -0.7 372,785 - MPMX19_05655 0.76 -0.7 372,785 - MPMX19_05655 0.76 -0.9 372,785 - MPMX19_05655 0.76 -1.4 372,942 + +0.7 372,942 + +0.3 372,942 + -0.4 372,943 - -0.0 372,943 - -0.1 372,946 + -0.1 372,946 + -0.7 372,946 + -0.7 372,946 + -0.7 372,946 + -0.6 372,946 + +0.1 372,946 + -1.1 372,946 + -1.0 372,946 + -0.1 372,946 + +0.0 372,946 + +0.2 372,946 + -0.5 372,946 + -0.7 372,947 - -0.7 372,947 - +0.1 372,947 - -1.4 372,947 - -1.1 372,947 - -0.3 372,947 - +0.5 372,947 - -0.7 372,947 - +0.8 372,947 - -0.1 372,947 - -0.3 372,947 - -1.8 373,268 + MPMX19_05656 0.44 -0.5 373,374 + MPMX19_05656 0.58 -0.6 373,374 + MPMX19_05656 0.58 +0.5 373,374 + MPMX19_05656 0.58 +1.5 373,374 + MPMX19_05656 0.58 -0.2 373,374 + MPMX19_05656 0.58 -0.5 373,375 - MPMX19_05656 0.58 -1.5 373,650 + -0.2 373,650 + -1.1 373,650 + -1.6 373,650 + -0.9 373,650 + -0.1 373,651 - -1.6 373,651 - -1.2 373,651 - -0.2 373,651 - -0.4 373,651 - -0.6 373,729 + +1.5 373,729 + +0.1 373,729 + -0.2 373,729 + -1.9 373,729 + +1.1 373,729 + -0.1 373,729 + -1.1 373,730 - -0.0 373,785 + -0.5 373,848 - -1.8 373,868 + -0.5 373,903 - +0.1 373,942 + -0.3
Or see this region's nucleotide sequence