Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05654

Experiment: NL-CCM, start OD=0.3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_05652 and MPMX19_05653 are separated by 88 nucleotidesMPMX19_05653 and MPMX19_05654 are separated by 74 nucleotidesMPMX19_05654 and MPMX19_05655 are separated by 107 nucleotidesMPMX19_05655 and MPMX19_05656 overlap by 8 nucleotides MPMX19_05652: MPMX19_05652 - hypothetical protein, at 370,208 to 370,822 _05652 MPMX19_05653: MPMX19_05653 - Leucine-responsive regulatory protein, at 370,911 to 371,390 _05653 MPMX19_05654: MPMX19_05654 - hypothetical protein, at 371,465 to 372,154 _05654 MPMX19_05655: MPMX19_05655 - hypothetical protein, at 372,262 to 372,948 _05655 MPMX19_05656: MPMX19_05656 - HTH-type transcriptional activator RhaR, at 372,941 to 373,690 _05656 Position (kb) 371 372 373Strain fitness (log2 ratio) -2 -1 0 1at 370.538 kb on + strand, within MPMX19_05652at 370.556 kb on + strand, within MPMX19_05652at 370.556 kb on + strand, within MPMX19_05652at 370.556 kb on + strand, within MPMX19_05652at 370.556 kb on + strand, within MPMX19_05652at 370.557 kb on - strand, within MPMX19_05652at 370.596 kb on - strand, within MPMX19_05652at 370.596 kb on - strand, within MPMX19_05652at 370.596 kb on - strand, within MPMX19_05652at 370.596 kb on - strand, within MPMX19_05652at 371.029 kb on + strand, within MPMX19_05653at 371.029 kb on + strand, within MPMX19_05653at 371.030 kb on - strand, within MPMX19_05653at 371.030 kb on - strand, within MPMX19_05653at 371.030 kb on - strand, within MPMX19_05653at 371.030 kb on - strand, within MPMX19_05653at 371.030 kb on - strand, within MPMX19_05653at 371.065 kb on + strand, within MPMX19_05653at 371.065 kb on + strand, within MPMX19_05653at 371.065 kb on + strand, within MPMX19_05653at 371.065 kb on + strand, within MPMX19_05653at 371.065 kb on + strand, within MPMX19_05653at 371.065 kb on + strand, within MPMX19_05653at 371.066 kb on - strand, within MPMX19_05653at 371.066 kb on - strand, within MPMX19_05653at 371.066 kb on - strand, within MPMX19_05653at 371.066 kb on - strand, within MPMX19_05653at 371.227 kb on + strand, within MPMX19_05653at 371.227 kb on + strand, within MPMX19_05653at 371.228 kb on - strand, within MPMX19_05653at 371.432 kb on + strandat 371.557 kb on + strand, within MPMX19_05654at 371.557 kb on + strand, within MPMX19_05654at 371.558 kb on - strand, within MPMX19_05654at 371.558 kb on - strand, within MPMX19_05654at 371.558 kb on - strand, within MPMX19_05654at 371.558 kb on - strand, within MPMX19_05654at 371.558 kb on - strand, within MPMX19_05654at 371.576 kb on + strand, within MPMX19_05654at 371.576 kb on + strand, within MPMX19_05654at 371.576 kb on + strand, within MPMX19_05654at 371.577 kb on - strand, within MPMX19_05654at 371.577 kb on - strand, within MPMX19_05654at 371.963 kb on + strand, within MPMX19_05654at 371.963 kb on + strand, within MPMX19_05654at 371.963 kb on + strand, within MPMX19_05654at 371.963 kb on + strand, within MPMX19_05654at 371.963 kb on + strand, within MPMX19_05654at 371.963 kb on + strand, within MPMX19_05654at 371.963 kb on + strand, within MPMX19_05654at 371.963 kb on + strand, within MPMX19_05654at 371.963 kb on + strand, within MPMX19_05654at 371.963 kb on + strand, within MPMX19_05654at 371.963 kb on + strand, within MPMX19_05654at 371.964 kb on - strand, within MPMX19_05654at 371.964 kb on - strand, within MPMX19_05654at 371.964 kb on - strand, within MPMX19_05654at 371.964 kb on - strand, within MPMX19_05654at 371.964 kb on - strand, within MPMX19_05654at 371.964 kb on - strand, within MPMX19_05654at 371.964 kb on - strand, within MPMX19_05654at 371.964 kb on - strand, within MPMX19_05654at 371.964 kb on - strand, within MPMX19_05654at 371.964 kb on - strand, within MPMX19_05654at 371.964 kb on - strand, within MPMX19_05654at 372.014 kb on + strand, within MPMX19_05654at 372.014 kb on + strand, within MPMX19_05654at 372.014 kb on + strand, within MPMX19_05654at 372.015 kb on - strand, within MPMX19_05654at 372.015 kb on - strand, within MPMX19_05654at 372.015 kb on - strand, within MPMX19_05654at 372.042 kb on + strand, within MPMX19_05654at 372.042 kb on + strand, within MPMX19_05654at 372.042 kb on + strand, within MPMX19_05654at 372.043 kb on - strand, within MPMX19_05654at 372.043 kb on - strand, within MPMX19_05654at 372.098 kb on + strandat 372.098 kb on + strandat 372.098 kb on + strandat 372.098 kb on + strandat 372.098 kb on + strandat 372.098 kb on + strandat 372.098 kb on + strandat 372.098 kb on + strandat 372.098 kb on + strandat 372.098 kb on + strandat 372.099 kb on - strandat 372.099 kb on - strandat 372.099 kb on - strandat 372.099 kb on - strandat 372.099 kb on - strandat 372.099 kb on - strandat 372.099 kb on - strandat 372.099 kb on - strandat 372.099 kb on - strandat 372.099 kb on - strandat 372.099 kb on - strandat 372.099 kb on - strandat 372.104 kb on + strandat 372.104 kb on + strandat 372.104 kb on + strandat 372.104 kb on + strandat 372.105 kb on - strandat 372.523 kb on + strand, within MPMX19_05655at 372.523 kb on + strand, within MPMX19_05655at 372.523 kb on + strand, within MPMX19_05655at 372.523 kb on + strand, within MPMX19_05655at 372.523 kb on + strand, within MPMX19_05655at 372.523 kb on + strand, within MPMX19_05655at 372.523 kb on + strand, within MPMX19_05655at 372.523 kb on + strand, within MPMX19_05655at 372.523 kb on + strand, within MPMX19_05655at 372.523 kb on + strand, within MPMX19_05655at 372.523 kb on + strand, within MPMX19_05655at 372.523 kb on + strand, within MPMX19_05655at 372.523 kb on + strand, within MPMX19_05655at 372.523 kb on + strand, within MPMX19_05655at 372.523 kb on + strand, within MPMX19_05655at 372.523 kb on + strand, within MPMX19_05655at 372.523 kb on + strand, within MPMX19_05655at 372.523 kb on + strand, within MPMX19_05655at 372.523 kb on + strand, within MPMX19_05655at 372.524 kb on - strand, within MPMX19_05655at 372.524 kb on - strand, within MPMX19_05655at 372.524 kb on - strand, within MPMX19_05655at 372.524 kb on - strand, within MPMX19_05655at 372.524 kb on - strand, within MPMX19_05655at 372.524 kb on - strand, within MPMX19_05655at 372.524 kb on - strand, within MPMX19_05655at 372.524 kb on - strand, within MPMX19_05655at 372.524 kb on - strand, within MPMX19_05655at 372.524 kb on - strand, within MPMX19_05655at 372.524 kb on - strand, within MPMX19_05655at 372.524 kb on - strand, within MPMX19_05655at 372.524 kb on - strand, within MPMX19_05655at 372.524 kb on - strand, within MPMX19_05655at 372.784 kb on + strand, within MPMX19_05655at 372.784 kb on + strand, within MPMX19_05655at 372.784 kb on + strand, within MPMX19_05655at 372.784 kb on + strand, within MPMX19_05655at 372.784 kb on + strand, within MPMX19_05655at 372.784 kb on + strand, within MPMX19_05655at 372.784 kb on + strand, within MPMX19_05655at 372.784 kb on + strand, within MPMX19_05655at 372.784 kb on + strand, within MPMX19_05655at 372.784 kb on + strand, within MPMX19_05655at 372.784 kb on + strand, within MPMX19_05655at 372.784 kb on + strand, within MPMX19_05655at 372.784 kb on + strand, within MPMX19_05655at 372.784 kb on + strand, within MPMX19_05655at 372.784 kb on + strand, within MPMX19_05655at 372.784 kb on + strand, within MPMX19_05655at 372.784 kb on + strand, within MPMX19_05655at 372.784 kb on + strand, within MPMX19_05655at 372.784 kb on + strand, within MPMX19_05655at 372.784 kb on + strand, within MPMX19_05655at 372.785 kb on - strand, within MPMX19_05655at 372.785 kb on - strand, within MPMX19_05655at 372.785 kb on - strand, within MPMX19_05655at 372.785 kb on - strand, within MPMX19_05655at 372.785 kb on - strand, within MPMX19_05655at 372.785 kb on - strand, within MPMX19_05655at 372.785 kb on - strand, within MPMX19_05655at 372.785 kb on - strand, within MPMX19_05655at 372.785 kb on - strand, within MPMX19_05655at 372.785 kb on - strand, within MPMX19_05655at 372.785 kb on - strand, within MPMX19_05655at 372.785 kb on - strand, within MPMX19_05655at 372.785 kb on - strand, within MPMX19_05655at 372.785 kb on - strand, within MPMX19_05655at 372.785 kb on - strand, within MPMX19_05655at 372.785 kb on - strand, within MPMX19_05655at 372.942 kb on + strandat 372.942 kb on + strandat 372.942 kb on + strandat 372.943 kb on - strandat 372.943 kb on - strandat 372.946 kb on + strandat 372.946 kb on + strandat 372.946 kb on + strandat 372.946 kb on + strandat 372.946 kb on + strandat 372.946 kb on + strandat 372.946 kb on + strandat 372.946 kb on + strandat 372.946 kb on + strandat 372.946 kb on + strandat 372.946 kb on + strandat 372.946 kb on + strandat 372.946 kb on + strandat 372.947 kb on - strandat 372.947 kb on - strandat 372.947 kb on - strandat 372.947 kb on - strandat 372.947 kb on - strandat 372.947 kb on - strandat 372.947 kb on - strandat 372.947 kb on - strandat 372.947 kb on - strandat 372.947 kb on - strandat 372.947 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
remove
370,538 + MPMX19_05652 0.54 +0.3
370,556 + MPMX19_05652 0.57 -1.5
370,556 + MPMX19_05652 0.57 -0.2
370,556 + MPMX19_05652 0.57 -1.1
370,556 + MPMX19_05652 0.57 +1.1
370,557 - MPMX19_05652 0.57 -0.1
370,596 - MPMX19_05652 0.63 -0.9
370,596 - MPMX19_05652 0.63 +0.8
370,596 - MPMX19_05652 0.63 -1.9
370,596 - MPMX19_05652 0.63 -0.5
371,029 + MPMX19_05653 0.25 -0.5
371,029 + MPMX19_05653 0.25 -0.6
371,030 - MPMX19_05653 0.25 -1.6
371,030 - MPMX19_05653 0.25 -0.5
371,030 - MPMX19_05653 0.25 -0.6
371,030 - MPMX19_05653 0.25 -0.4
371,030 - MPMX19_05653 0.25 +0.2
371,065 + MPMX19_05653 0.32 -0.5
371,065 + MPMX19_05653 0.32 -0.6
371,065 + MPMX19_05653 0.32 -1.1
371,065 + MPMX19_05653 0.32 -1.6
371,065 + MPMX19_05653 0.32 -1.0
371,065 + MPMX19_05653 0.32 +0.7
371,066 - MPMX19_05653 0.32 +0.4
371,066 - MPMX19_05653 0.32 +0.1
371,066 - MPMX19_05653 0.32 -0.6
371,066 - MPMX19_05653 0.32 -0.4
371,227 + MPMX19_05653 0.66 -0.4
371,227 + MPMX19_05653 0.66 -1.5
371,228 - MPMX19_05653 0.66 +0.5
371,432 + -0.5
371,557 + MPMX19_05654 0.13 -0.5
371,557 + MPMX19_05654 0.13 +0.4
371,558 - MPMX19_05654 0.13 -0.8
371,558 - MPMX19_05654 0.13 -0.9
371,558 - MPMX19_05654 0.13 -0.1
371,558 - MPMX19_05654 0.13 -1.0
371,558 - MPMX19_05654 0.13 -1.0
371,576 + MPMX19_05654 0.16 -1.1
371,576 + MPMX19_05654 0.16 -0.7
371,576 + MPMX19_05654 0.16 -0.7
371,577 - MPMX19_05654 0.16 -0.2
371,577 - MPMX19_05654 0.16 -0.4
371,963 + MPMX19_05654 0.72 -1.2
371,963 + MPMX19_05654 0.72 -0.8
371,963 + MPMX19_05654 0.72 +0.1
371,963 + MPMX19_05654 0.72 +0.6
371,963 + MPMX19_05654 0.72 +0.1
371,963 + MPMX19_05654 0.72 -0.3
371,963 + MPMX19_05654 0.72 -1.9
371,963 + MPMX19_05654 0.72 -2.0
371,963 + MPMX19_05654 0.72 +0.5
371,963 + MPMX19_05654 0.72 +0.5
371,963 + MPMX19_05654 0.72 -0.5
371,964 - MPMX19_05654 0.72 -0.6
371,964 - MPMX19_05654 0.72 +1.5
371,964 - MPMX19_05654 0.72 -0.1
371,964 - MPMX19_05654 0.72 -0.2
371,964 - MPMX19_05654 0.72 -0.0
371,964 - MPMX19_05654 0.72 +0.2
371,964 - MPMX19_05654 0.72 +0.9
371,964 - MPMX19_05654 0.72 -0.4
371,964 - MPMX19_05654 0.72 -0.4
371,964 - MPMX19_05654 0.72 -1.5
371,964 - MPMX19_05654 0.72 -0.9
372,014 + MPMX19_05654 0.80 -0.2
372,014 + MPMX19_05654 0.80 +0.5
372,014 + MPMX19_05654 0.80 +0.0
372,015 - MPMX19_05654 0.80 +0.4
372,015 - MPMX19_05654 0.80 -1.7
372,015 - MPMX19_05654 0.80 +0.4
372,042 + MPMX19_05654 0.84 +1.4
372,042 + MPMX19_05654 0.84 +0.3
372,042 + MPMX19_05654 0.84 -0.0
372,043 - MPMX19_05654 0.84 -0.0
372,043 - MPMX19_05654 0.84 +0.4
372,098 + -1.0
372,098 + -0.7
372,098 + +0.1
372,098 + -0.7
372,098 + -0.6
372,098 + -0.1
372,098 + -0.1
372,098 + +0.2
372,098 + -1.1
372,098 + -0.2
372,099 - -0.1
372,099 - -1.8
372,099 - -0.1
372,099 - -0.6
372,099 - -0.3
372,099 - -1.2
372,099 - -1.1
372,099 - +1.6
372,099 - -2.1
372,099 - -0.7
372,099 - -0.5
372,099 - +0.0
372,104 + -2.1
372,104 + -0.8
372,104 + -1.0
372,104 + -1.5
372,105 - +1.4
372,523 + MPMX19_05655 0.38 -1.9
372,523 + MPMX19_05655 0.38 -0.8
372,523 + MPMX19_05655 0.38 +0.8
372,523 + MPMX19_05655 0.38 -0.6
372,523 + MPMX19_05655 0.38 -1.5
372,523 + MPMX19_05655 0.38 -1.5
372,523 + MPMX19_05655 0.38 +1.0
372,523 + MPMX19_05655 0.38 -0.7
372,523 + MPMX19_05655 0.38 -0.3
372,523 + MPMX19_05655 0.38 +0.2
372,523 + MPMX19_05655 0.38 +0.1
372,523 + MPMX19_05655 0.38 +0.9
372,523 + MPMX19_05655 0.38 -0.6
372,523 + MPMX19_05655 0.38 -0.9
372,523 + MPMX19_05655 0.38 -0.1
372,523 + MPMX19_05655 0.38 -0.7
372,523 + MPMX19_05655 0.38 -1.4
372,523 + MPMX19_05655 0.38 +1.1
372,523 + MPMX19_05655 0.38 -0.4
372,524 - MPMX19_05655 0.38 +0.1
372,524 - MPMX19_05655 0.38 -0.5
372,524 - MPMX19_05655 0.38 +0.5
372,524 - MPMX19_05655 0.38 -0.7
372,524 - MPMX19_05655 0.38 -0.2
372,524 - MPMX19_05655 0.38 +0.3
372,524 - MPMX19_05655 0.38 -0.7
372,524 - MPMX19_05655 0.38 -1.1
372,524 - MPMX19_05655 0.38 +0.4
372,524 - MPMX19_05655 0.38 -0.8
372,524 - MPMX19_05655 0.38 +0.4
372,524 - MPMX19_05655 0.38 +1.4
372,524 - MPMX19_05655 0.38 -0.6
372,524 - MPMX19_05655 0.38 +0.4
372,784 + MPMX19_05655 0.76 -2.7
372,784 + MPMX19_05655 0.76 -0.0
372,784 + MPMX19_05655 0.76 -0.1
372,784 + MPMX19_05655 0.76 +0.3
372,784 + MPMX19_05655 0.76 -1.1
372,784 + MPMX19_05655 0.76 -0.7
372,784 + MPMX19_05655 0.76 -1.8
372,784 + MPMX19_05655 0.76 -1.4
372,784 + MPMX19_05655 0.76 -0.2
372,784 + MPMX19_05655 0.76 +0.1
372,784 + MPMX19_05655 0.76 +1.0
372,784 + MPMX19_05655 0.76 +1.1
372,784 + MPMX19_05655 0.76 -1.5
372,784 + MPMX19_05655 0.76 +0.8
372,784 + MPMX19_05655 0.76 +1.1
372,784 + MPMX19_05655 0.76 +0.7
372,784 + MPMX19_05655 0.76 -0.7
372,784 + MPMX19_05655 0.76 -2.1
372,784 + MPMX19_05655 0.76 -1.2
372,784 + MPMX19_05655 0.76 -0.6
372,785 - MPMX19_05655 0.76 -0.4
372,785 - MPMX19_05655 0.76 +0.7
372,785 - MPMX19_05655 0.76 +0.1
372,785 - MPMX19_05655 0.76 -0.9
372,785 - MPMX19_05655 0.76 -0.2
372,785 - MPMX19_05655 0.76 -0.6
372,785 - MPMX19_05655 0.76 -1.4
372,785 - MPMX19_05655 0.76 +0.2
372,785 - MPMX19_05655 0.76 +0.0
372,785 - MPMX19_05655 0.76 -0.1
372,785 - MPMX19_05655 0.76 -0.5
372,785 - MPMX19_05655 0.76 -0.8
372,785 - MPMX19_05655 0.76 -0.7
372,785 - MPMX19_05655 0.76 -0.7
372,785 - MPMX19_05655 0.76 -0.9
372,785 - MPMX19_05655 0.76 -1.4
372,942 + +0.7
372,942 + +0.3
372,942 + -0.4
372,943 - -0.0
372,943 - -0.1
372,946 + -0.1
372,946 + -0.7
372,946 + -0.7
372,946 + -0.7
372,946 + -0.6
372,946 + +0.1
372,946 + -1.1
372,946 + -1.0
372,946 + -0.1
372,946 + +0.0
372,946 + +0.2
372,946 + -0.5
372,946 + -0.7
372,947 - -0.7
372,947 - +0.1
372,947 - -1.4
372,947 - -1.1
372,947 - -0.3
372,947 - +0.5
372,947 - -0.7
372,947 - +0.8
372,947 - -0.1
372,947 - -0.3
372,947 - -1.8

Or see this region's nucleotide sequence