Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05629

Experiment: NL-CCM, start OD=0.3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_05628 and MPMX19_05629 are separated by 131 nucleotidesMPMX19_05629 and MPMX19_05630 are separated by 6 nucleotides MPMX19_05628: MPMX19_05628 - dTDP-4-oxo-6-deoxy-D-allose reductase, at 344,840 to 345,835 _05628 MPMX19_05629: MPMX19_05629 - GDP-L-fucose synthase, at 345,967 to 346,932 _05629 MPMX19_05630: MPMX19_05630 - hypothetical protein, at 346,939 to 348,234 _05630 Position (kb) 345 346 347Strain fitness (log2 ratio) -3 -2 -1 0 1at 345.092 kb on + strand, within MPMX19_05628at 345.093 kb on - strand, within MPMX19_05628at 345.206 kb on + strand, within MPMX19_05628at 345.206 kb on + strand, within MPMX19_05628at 345.206 kb on + strand, within MPMX19_05628at 345.206 kb on + strand, within MPMX19_05628at 345.206 kb on + strand, within MPMX19_05628at 345.207 kb on - strand, within MPMX19_05628at 345.278 kb on + strand, within MPMX19_05628at 345.278 kb on + strand, within MPMX19_05628at 345.278 kb on + strand, within MPMX19_05628at 345.284 kb on + strand, within MPMX19_05628at 345.285 kb on - strand, within MPMX19_05628at 345.285 kb on - strand, within MPMX19_05628at 345.285 kb on - strand, within MPMX19_05628at 345.377 kb on + strand, within MPMX19_05628at 345.377 kb on + strand, within MPMX19_05628at 345.377 kb on + strand, within MPMX19_05628at 345.378 kb on - strand, within MPMX19_05628at 345.378 kb on - strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.783 kb on - strandat 345.783 kb on - strandat 345.783 kb on - strandat 345.783 kb on - strandat 345.783 kb on - strandat 345.783 kb on - strandat 345.783 kb on - strandat 345.833 kb on + strandat 345.833 kb on + strandat 345.834 kb on - strandat 345.834 kb on - strandat 345.834 kb on - strandat 345.951 kb on + strandat 345.952 kb on - strandat 345.952 kb on - strandat 345.952 kb on - strandat 345.952 kb on - strandat 346.301 kb on - strand, within MPMX19_05629at 346.375 kb on + strand, within MPMX19_05629at 346.376 kb on - strand, within MPMX19_05629at 346.417 kb on + strand, within MPMX19_05629at 346.417 kb on + strand, within MPMX19_05629at 346.429 kb on + strand, within MPMX19_05629at 346.429 kb on + strand, within MPMX19_05629at 346.429 kb on + strand, within MPMX19_05629at 346.430 kb on - strand, within MPMX19_05629at 346.468 kb on + strand, within MPMX19_05629at 346.469 kb on - strand, within MPMX19_05629at 346.606 kb on + strand, within MPMX19_05629at 346.606 kb on + strand, within MPMX19_05629at 346.606 kb on + strand, within MPMX19_05629at 346.606 kb on + strand, within MPMX19_05629at 346.606 kb on + strand, within MPMX19_05629at 346.606 kb on + strand, within MPMX19_05629at 346.606 kb on + strand, within MPMX19_05629at 346.607 kb on - strand, within MPMX19_05629at 346.607 kb on - strand, within MPMX19_05629at 346.607 kb on - strand, within MPMX19_05629at 346.607 kb on - strand, within MPMX19_05629at 346.607 kb on - strand, within MPMX19_05629at 346.607 kb on - strand, within MPMX19_05629at 346.651 kb on + strand, within MPMX19_05629at 346.651 kb on + strand, within MPMX19_05629at 346.651 kb on + strand, within MPMX19_05629at 346.652 kb on - strand, within MPMX19_05629at 346.652 kb on - strand, within MPMX19_05629at 346.652 kb on - strand, within MPMX19_05629at 346.652 kb on - strand, within MPMX19_05629at 346.652 kb on - strand, within MPMX19_05629at 346.652 kb on - strand, within MPMX19_05629at 346.652 kb on - strand, within MPMX19_05629at 346.739 kb on - strand, within MPMX19_05629at 346.867 kb on + strandat 346.867 kb on + strandat 346.867 kb on + strandat 346.867 kb on + strandat 346.867 kb on + strandat 346.867 kb on + strandat 346.867 kb on + strandat 346.867 kb on + strandat 346.867 kb on + strandat 346.868 kb on - strandat 346.868 kb on - strandat 346.868 kb on - strandat 346.868 kb on - strandat 346.868 kb on - strandat 346.930 kb on + strandat 346.930 kb on + strandat 346.931 kb on - strandat 346.931 kb on - strandat 347.065 kb on + strandat 347.065 kb on + strandat 347.065 kb on + strandat 347.065 kb on + strandat 347.065 kb on + strandat 347.065 kb on + strandat 347.065 kb on + strandat 347.065 kb on + strandat 347.065 kb on + strandat 347.065 kb on + strandat 347.065 kb on + strandat 347.065 kb on + strandat 347.066 kb on - strandat 347.066 kb on - strandat 347.066 kb on - strandat 347.066 kb on - strandat 347.066 kb on - strandat 347.066 kb on - strandat 347.167 kb on + strand, within MPMX19_05630at 347.167 kb on + strand, within MPMX19_05630at 347.167 kb on + strand, within MPMX19_05630at 347.167 kb on + strand, within MPMX19_05630at 347.168 kb on - strand, within MPMX19_05630at 347.168 kb on - strand, within MPMX19_05630at 347.168 kb on - strand, within MPMX19_05630at 347.185 kb on + strand, within MPMX19_05630at 347.185 kb on + strand, within MPMX19_05630at 347.185 kb on + strand, within MPMX19_05630at 347.185 kb on + strand, within MPMX19_05630at 347.185 kb on + strand, within MPMX19_05630at 347.185 kb on + strand, within MPMX19_05630at 347.185 kb on + strand, within MPMX19_05630at 347.185 kb on + strand, within MPMX19_05630at 347.185 kb on + strand, within MPMX19_05630at 347.185 kb on + strand, within MPMX19_05630at 347.185 kb on + strand, within MPMX19_05630at 347.186 kb on - strand, within MPMX19_05630at 347.186 kb on - strand, within MPMX19_05630at 347.186 kb on - strand, within MPMX19_05630at 347.186 kb on - strand, within MPMX19_05630at 347.186 kb on - strand, within MPMX19_05630at 347.186 kb on - strand, within MPMX19_05630at 347.186 kb on - strand, within MPMX19_05630at 347.186 kb on - strand, within MPMX19_05630at 347.186 kb on - strand, within MPMX19_05630at 347.186 kb on - strand, within MPMX19_05630at 347.186 kb on - strand, within MPMX19_05630at 347.186 kb on - strand, within MPMX19_05630at 347.692 kb on + strand, within MPMX19_05630at 347.692 kb on + strand, within MPMX19_05630at 347.692 kb on + strand, within MPMX19_05630at 347.692 kb on + strand, within MPMX19_05630at 347.693 kb on - strand, within MPMX19_05630at 347.693 kb on - strand, within MPMX19_05630at 347.693 kb on - strand, within MPMX19_05630

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
remove
345,092 + MPMX19_05628 0.25 +0.3
345,093 - MPMX19_05628 0.25 -0.5
345,206 + MPMX19_05628 0.37 -1.2
345,206 + MPMX19_05628 0.37 +0.4
345,206 + MPMX19_05628 0.37 -0.7
345,206 + MPMX19_05628 0.37 -0.7
345,206 + MPMX19_05628 0.37 -0.5
345,207 - MPMX19_05628 0.37 -1.9
345,278 + MPMX19_05628 0.44 -1.2
345,278 + MPMX19_05628 0.44 +0.1
345,278 + MPMX19_05628 0.44 -0.3
345,284 + MPMX19_05628 0.45 +0.8
345,285 - MPMX19_05628 0.45 +1.0
345,285 - MPMX19_05628 0.45 +0.3
345,285 - MPMX19_05628 0.45 -0.8
345,377 + MPMX19_05628 0.54 -1.1
345,377 + MPMX19_05628 0.54 +0.2
345,377 + MPMX19_05628 0.54 -1.2
345,378 - MPMX19_05628 0.54 +0.4
345,378 - MPMX19_05628 0.54 -0.5
345,575 + MPMX19_05628 0.74 -0.1
345,575 + MPMX19_05628 0.74 -0.1
345,575 + MPMX19_05628 0.74 +0.4
345,575 + MPMX19_05628 0.74 -2.1
345,575 + MPMX19_05628 0.74 -2.0
345,575 + MPMX19_05628 0.74 -0.4
345,575 + MPMX19_05628 0.74 -0.6
345,575 + MPMX19_05628 0.74 +0.3
345,575 + MPMX19_05628 0.74 +0.5
345,575 + MPMX19_05628 0.74 -1.4
345,575 + MPMX19_05628 0.74 -0.5
345,575 + MPMX19_05628 0.74 +0.8
345,575 + MPMX19_05628 0.74 +0.5
345,575 + MPMX19_05628 0.74 -0.6
345,575 + MPMX19_05628 0.74 -1.5
345,575 + MPMX19_05628 0.74 +0.9
345,575 + MPMX19_05628 0.74 +1.4
345,575 + MPMX19_05628 0.74 +0.1
345,575 + MPMX19_05628 0.74 +0.2
345,575 + MPMX19_05628 0.74 -0.2
345,575 + MPMX19_05628 0.74 -0.9
345,575 + MPMX19_05628 0.74 -0.2
345,575 + MPMX19_05628 0.74 -2.1
345,575 + MPMX19_05628 0.74 +0.0
345,575 + MPMX19_05628 0.74 +0.5
345,576 - MPMX19_05628 0.74 -1.6
345,576 - MPMX19_05628 0.74 +1.4
345,576 - MPMX19_05628 0.74 -0.1
345,576 - MPMX19_05628 0.74 +0.5
345,576 - MPMX19_05628 0.74 +0.3
345,576 - MPMX19_05628 0.74 +0.4
345,576 - MPMX19_05628 0.74 +0.2
345,576 - MPMX19_05628 0.74 -2.1
345,576 - MPMX19_05628 0.74 -0.7
345,576 - MPMX19_05628 0.74 -1.1
345,576 - MPMX19_05628 0.74 +1.5
345,576 - MPMX19_05628 0.74 -2.5
345,576 - MPMX19_05628 0.74 +0.4
345,576 - MPMX19_05628 0.74 +0.8
345,576 - MPMX19_05628 0.74 -0.4
345,576 - MPMX19_05628 0.74 -0.4
345,576 - MPMX19_05628 0.74 -0.7
345,576 - MPMX19_05628 0.74 -0.4
345,576 - MPMX19_05628 0.74 +0.3
345,576 - MPMX19_05628 0.74 -1.3
345,576 - MPMX19_05628 0.74 -1.6
345,576 - MPMX19_05628 0.74 -1.3
345,576 - MPMX19_05628 0.74 -0.7
345,576 - MPMX19_05628 0.74 -0.3
345,576 - MPMX19_05628 0.74 +0.2
345,576 - MPMX19_05628 0.74 -1.1
345,576 - MPMX19_05628 0.74 -0.6
345,576 - MPMX19_05628 0.74 +0.5
345,783 - -0.9
345,783 - -0.6
345,783 - +0.7
345,783 - -2.0
345,783 - +0.2
345,783 - -1.9
345,783 - -1.6
345,833 + -0.8
345,833 + +0.3
345,834 - -0.5
345,834 - -1.0
345,834 - -3.0
345,951 + -1.1
345,952 - +0.9
345,952 - +0.8
345,952 - -1.7
345,952 - -0.4
346,301 - MPMX19_05629 0.35 -1.1
346,375 + MPMX19_05629 0.42 -2.2
346,376 - MPMX19_05629 0.42 -1.0
346,417 + MPMX19_05629 0.47 -0.1
346,417 + MPMX19_05629 0.47 -0.1
346,429 + MPMX19_05629 0.48 -1.7
346,429 + MPMX19_05629 0.48 -0.9
346,429 + MPMX19_05629 0.48 -0.5
346,430 - MPMX19_05629 0.48 +0.1
346,468 + MPMX19_05629 0.52 -0.1
346,469 - MPMX19_05629 0.52 -0.2
346,606 + MPMX19_05629 0.66 +0.0
346,606 + MPMX19_05629 0.66 -2.3
346,606 + MPMX19_05629 0.66 -1.3
346,606 + MPMX19_05629 0.66 -0.5
346,606 + MPMX19_05629 0.66 -0.8
346,606 + MPMX19_05629 0.66 -1.5
346,606 + MPMX19_05629 0.66 -0.1
346,607 - MPMX19_05629 0.66 -1.6
346,607 - MPMX19_05629 0.66 +0.1
346,607 - MPMX19_05629 0.66 -0.1
346,607 - MPMX19_05629 0.66 +1.1
346,607 - MPMX19_05629 0.66 -0.5
346,607 - MPMX19_05629 0.66 -0.7
346,651 + MPMX19_05629 0.71 -3.0
346,651 + MPMX19_05629 0.71 -0.2
346,651 + MPMX19_05629 0.71 -0.4
346,652 - MPMX19_05629 0.71 -1.7
346,652 - MPMX19_05629 0.71 -1.1
346,652 - MPMX19_05629 0.71 +0.3
346,652 - MPMX19_05629 0.71 -0.1
346,652 - MPMX19_05629 0.71 -1.2
346,652 - MPMX19_05629 0.71 -0.5
346,652 - MPMX19_05629 0.71 +1.3
346,739 - MPMX19_05629 0.80 -0.4
346,867 + -0.6
346,867 + -1.5
346,867 + -0.5
346,867 + -0.6
346,867 + +0.9
346,867 + -0.7
346,867 + -0.7
346,867 + +0.8
346,867 + -0.3
346,868 - -1.5
346,868 - +1.1
346,868 - -0.4
346,868 - -0.8
346,868 - -0.7
346,930 + -1.5
346,930 + +0.5
346,931 - -1.5
346,931 - -1.2
347,065 + +0.2
347,065 + -0.3
347,065 + -3.4
347,065 + +1.7
347,065 + +1.3
347,065 + +0.2
347,065 + -0.7
347,065 + -0.4
347,065 + +0.1
347,065 + -0.9
347,065 + +0.7
347,065 + -2.7
347,066 - -1.0
347,066 - -1.5
347,066 - -0.7
347,066 - -0.8
347,066 - +0.0
347,066 - -0.6
347,167 + MPMX19_05630 0.18 -1.1
347,167 + MPMX19_05630 0.18 +0.7
347,167 + MPMX19_05630 0.18 -0.6
347,167 + MPMX19_05630 0.18 +1.5
347,168 - MPMX19_05630 0.18 -0.4
347,168 - MPMX19_05630 0.18 +0.1
347,168 - MPMX19_05630 0.18 -1.1
347,185 + MPMX19_05630 0.19 -0.8
347,185 + MPMX19_05630 0.19 -0.4
347,185 + MPMX19_05630 0.19 -0.7
347,185 + MPMX19_05630 0.19 -1.1
347,185 + MPMX19_05630 0.19 -2.9
347,185 + MPMX19_05630 0.19 +1.1
347,185 + MPMX19_05630 0.19 -0.5
347,185 + MPMX19_05630 0.19 -0.2
347,185 + MPMX19_05630 0.19 -0.1
347,185 + MPMX19_05630 0.19 +1.1
347,185 + MPMX19_05630 0.19 -0.7
347,186 - MPMX19_05630 0.19 -2.5
347,186 - MPMX19_05630 0.19 -0.2
347,186 - MPMX19_05630 0.19 -0.2
347,186 - MPMX19_05630 0.19 +0.7
347,186 - MPMX19_05630 0.19 -0.7
347,186 - MPMX19_05630 0.19 -0.9
347,186 - MPMX19_05630 0.19 +1.1
347,186 - MPMX19_05630 0.19 -2.2
347,186 - MPMX19_05630 0.19 +0.8
347,186 - MPMX19_05630 0.19 +0.5
347,186 - MPMX19_05630 0.19 +0.5
347,186 - MPMX19_05630 0.19 +1.1
347,692 + MPMX19_05630 0.58 -2.1
347,692 + MPMX19_05630 0.58 -2.8
347,692 + MPMX19_05630 0.58 +0.0
347,692 + MPMX19_05630 0.58 +1.0
347,693 - MPMX19_05630 0.58 -1.1
347,693 - MPMX19_05630 0.58 -1.4
347,693 - MPMX19_05630 0.58 +0.9

Or see this region's nucleotide sequence