Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05601

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05599 and MPMX19_05600 are separated by 16 nucleotidesMPMX19_05600 and MPMX19_05601 overlap by 4 nucleotidesMPMX19_05601 and MPMX19_05602 are separated by 96 nucleotides MPMX19_05599: MPMX19_05599 - hypothetical protein, at 309,425 to 310,189 _05599 MPMX19_05600: MPMX19_05600 - hypothetical protein, at 310,206 to 311,006 _05600 MPMX19_05601: MPMX19_05601 - putative ABC transporter ATP-binding protein YejF, at 311,003 to 312,703 _05601 MPMX19_05602: MPMX19_05602 - Adaptive-response sensory-kinase SasA, at 312,800 to 313,885 _05602 Position (kb) 311 312 313Strain fitness (log2 ratio) -2 -1 0 1at 310.110 kb on + strand, within MPMX19_05599at 310.110 kb on + strand, within MPMX19_05599at 310.111 kb on - strand, within MPMX19_05599at 310.111 kb on - strand, within MPMX19_05599at 310.175 kb on + strandat 310.175 kb on + strandat 310.175 kb on + strandat 310.175 kb on + strandat 310.175 kb on + strandat 310.176 kb on - strandat 310.176 kb on - strandat 310.176 kb on - strandat 310.176 kb on - strandat 310.176 kb on - strandat 310.215 kb on + strandat 310.216 kb on - strandat 310.216 kb on - strandat 310.216 kb on - strandat 311.747 kb on + strand, within MPMX19_05601at 311.747 kb on + strand, within MPMX19_05601at 311.748 kb on - strand, within MPMX19_05601at 311.748 kb on - strand, within MPMX19_05601at 312.386 kb on + strand, within MPMX19_05601at 312.491 kb on + strand, within MPMX19_05601at 312.491 kb on + strand, within MPMX19_05601at 312.492 kb on - strand, within MPMX19_05601at 312.492 kb on - strand, within MPMX19_05601at 312.492 kb on - strand, within MPMX19_05601at 312.677 kb on + strandat 313.187 kb on + strand, within MPMX19_05602at 313.187 kb on + strand, within MPMX19_05602at 313.187 kb on + strand, within MPMX19_05602at 313.187 kb on + strand, within MPMX19_05602at 313.187 kb on + strand, within MPMX19_05602at 313.187 kb on + strand, within MPMX19_05602at 313.187 kb on + strand, within MPMX19_05602at 313.187 kb on + strand, within MPMX19_05602at 313.187 kb on + strand, within MPMX19_05602at 313.187 kb on + strand, within MPMX19_05602at 313.187 kb on + strand, within MPMX19_05602at 313.188 kb on - strand, within MPMX19_05602at 313.188 kb on - strand, within MPMX19_05602at 313.188 kb on - strand, within MPMX19_05602at 313.188 kb on - strand, within MPMX19_05602at 313.188 kb on - strand, within MPMX19_05602at 313.188 kb on - strand, within MPMX19_05602at 313.188 kb on - strand, within MPMX19_05602at 313.188 kb on - strand, within MPMX19_05602at 313.188 kb on - strand, within MPMX19_05602at 313.188 kb on - strand, within MPMX19_05602at 313.292 kb on + strand, within MPMX19_05602at 313.293 kb on - strand, within MPMX19_05602at 313.331 kb on + strand, within MPMX19_05602at 313.331 kb on + strand, within MPMX19_05602at 313.331 kb on + strand, within MPMX19_05602at 313.331 kb on + strand, within MPMX19_05602at 313.331 kb on + strand, within MPMX19_05602at 313.331 kb on + strand, within MPMX19_05602at 313.331 kb on + strand, within MPMX19_05602at 313.331 kb on + strand, within MPMX19_05602at 313.331 kb on + strand, within MPMX19_05602at 313.332 kb on - strand, within MPMX19_05602at 313.332 kb on - strand, within MPMX19_05602at 313.332 kb on - strand, within MPMX19_05602at 313.332 kb on - strand, within MPMX19_05602at 313.332 kb on - strand, within MPMX19_05602at 313.332 kb on - strand, within MPMX19_05602at 313.332 kb on - strand, within MPMX19_05602at 313.332 kb on - strand, within MPMX19_05602at 313.332 kb on - strand, within MPMX19_05602at 313.333 kb on + strand, within MPMX19_05602at 313.333 kb on + strand, within MPMX19_05602at 313.333 kb on + strand, within MPMX19_05602at 313.333 kb on + strand, within MPMX19_05602at 313.333 kb on + strand, within MPMX19_05602at 313.333 kb on + strand, within MPMX19_05602at 313.333 kb on + strand, within MPMX19_05602at 313.333 kb on + strand, within MPMX19_05602at 313.333 kb on + strand, within MPMX19_05602at 313.333 kb on + strand, within MPMX19_05602at 313.333 kb on + strand, within MPMX19_05602at 313.333 kb on + strand, within MPMX19_05602at 313.333 kb on + strand, within MPMX19_05602at 313.334 kb on - strand, within MPMX19_05602at 313.334 kb on - strand, within MPMX19_05602at 313.334 kb on - strand, within MPMX19_05602at 313.334 kb on - strand, within MPMX19_05602at 313.334 kb on - strand, within MPMX19_05602at 313.334 kb on - strand, within MPMX19_05602at 313.334 kb on - strand, within MPMX19_05602at 313.334 kb on - strand, within MPMX19_05602at 313.334 kb on - strand, within MPMX19_05602at 313.334 kb on - strand, within MPMX19_05602at 313.334 kb on - strand, within MPMX19_05602at 313.334 kb on - strand, within MPMX19_05602at 313.334 kb on - strand, within MPMX19_05602at 313.334 kb on - strand, within MPMX19_05602at 313.334 kb on - strand, within MPMX19_05602at 313.334 kb on - strand, within MPMX19_05602at 313.334 kb on - strand, within MPMX19_05602at 313.334 kb on - strand, within MPMX19_05602at 313.564 kb on + strand, within MPMX19_05602

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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310,110 + MPMX19_05599 0.90 -0.3
310,110 + MPMX19_05599 0.90 -0.9
310,111 - MPMX19_05599 0.90 -2.0
310,111 - MPMX19_05599 0.90 +0.1
310,175 + +1.6
310,175 + -1.0
310,175 + +0.3
310,175 + -0.2
310,175 + +0.4
310,176 - +0.5
310,176 - -0.7
310,176 - -0.5
310,176 - +0.7
310,176 - -0.0
310,215 + -0.5
310,216 - -0.9
310,216 - -0.9
310,216 - -1.3
311,747 + MPMX19_05601 0.44 +0.5
311,747 + MPMX19_05601 0.44 -2.3
311,748 - MPMX19_05601 0.44 -1.5
311,748 - MPMX19_05601 0.44 +0.4
312,386 + MPMX19_05601 0.81 +0.1
312,491 + MPMX19_05601 0.87 -1.0
312,491 + MPMX19_05601 0.87 -0.8
312,492 - MPMX19_05601 0.88 -0.5
312,492 - MPMX19_05601 0.88 -0.2
312,492 - MPMX19_05601 0.88 -1.3
312,677 + -0.2
313,187 + MPMX19_05602 0.36 -0.4
313,187 + MPMX19_05602 0.36 +0.9
313,187 + MPMX19_05602 0.36 -0.6
313,187 + MPMX19_05602 0.36 -0.1
313,187 + MPMX19_05602 0.36 -0.8
313,187 + MPMX19_05602 0.36 +0.7
313,187 + MPMX19_05602 0.36 -1.2
313,187 + MPMX19_05602 0.36 -1.8
313,187 + MPMX19_05602 0.36 -0.1
313,187 + MPMX19_05602 0.36 -0.3
313,187 + MPMX19_05602 0.36 -0.4
313,188 - MPMX19_05602 0.36 -0.9
313,188 - MPMX19_05602 0.36 +0.0
313,188 - MPMX19_05602 0.36 +1.4
313,188 - MPMX19_05602 0.36 -0.9
313,188 - MPMX19_05602 0.36 +0.9
313,188 - MPMX19_05602 0.36 +0.2
313,188 - MPMX19_05602 0.36 -0.7
313,188 - MPMX19_05602 0.36 -1.0
313,188 - MPMX19_05602 0.36 -1.1
313,188 - MPMX19_05602 0.36 +0.5
313,292 + MPMX19_05602 0.45 -1.4
313,293 - MPMX19_05602 0.45 +0.0
313,331 + MPMX19_05602 0.49 +0.5
313,331 + MPMX19_05602 0.49 -1.6
313,331 + MPMX19_05602 0.49 -0.8
313,331 + MPMX19_05602 0.49 -0.5
313,331 + MPMX19_05602 0.49 -1.3
313,331 + MPMX19_05602 0.49 -1.0
313,331 + MPMX19_05602 0.49 +0.1
313,331 + MPMX19_05602 0.49 -0.6
313,331 + MPMX19_05602 0.49 -0.7
313,332 - MPMX19_05602 0.49 -0.3
313,332 - MPMX19_05602 0.49 -1.8
313,332 - MPMX19_05602 0.49 -0.8
313,332 - MPMX19_05602 0.49 +0.3
313,332 - MPMX19_05602 0.49 -1.0
313,332 - MPMX19_05602 0.49 -2.3
313,332 - MPMX19_05602 0.49 -0.2
313,332 - MPMX19_05602 0.49 -0.6
313,332 - MPMX19_05602 0.49 +0.0
313,333 + MPMX19_05602 0.49 +0.2
313,333 + MPMX19_05602 0.49 +0.2
313,333 + MPMX19_05602 0.49 -0.8
313,333 + MPMX19_05602 0.49 -0.6
313,333 + MPMX19_05602 0.49 -2.1
313,333 + MPMX19_05602 0.49 -1.1
313,333 + MPMX19_05602 0.49 +0.1
313,333 + MPMX19_05602 0.49 +0.8
313,333 + MPMX19_05602 0.49 -0.2
313,333 + MPMX19_05602 0.49 +0.9
313,333 + MPMX19_05602 0.49 +0.7
313,333 + MPMX19_05602 0.49 -0.3
313,333 + MPMX19_05602 0.49 +1.0
313,334 - MPMX19_05602 0.49 -0.2
313,334 - MPMX19_05602 0.49 +0.1
313,334 - MPMX19_05602 0.49 +0.1
313,334 - MPMX19_05602 0.49 -0.8
313,334 - MPMX19_05602 0.49 -1.3
313,334 - MPMX19_05602 0.49 -0.8
313,334 - MPMX19_05602 0.49 +0.0
313,334 - MPMX19_05602 0.49 +0.1
313,334 - MPMX19_05602 0.49 -0.9
313,334 - MPMX19_05602 0.49 -0.4
313,334 - MPMX19_05602 0.49 -0.9
313,334 - MPMX19_05602 0.49 +0.1
313,334 - MPMX19_05602 0.49 -1.2
313,334 - MPMX19_05602 0.49 -0.2
313,334 - MPMX19_05602 0.49 -0.1
313,334 - MPMX19_05602 0.49 -1.5
313,334 - MPMX19_05602 0.49 -0.8
313,334 - MPMX19_05602 0.49 -0.8
313,564 + MPMX19_05602 0.70 -1.3

Or see this region's nucleotide sequence