Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05553 and MPMX19_05554 overlap by 4 nucleotides MPMX19_05554 and MPMX19_05555 are separated by 7 nucleotides
MPMX19_05553: MPMX19_05553 - hypothetical protein, at 260,421 to 262,397
_05553
MPMX19_05554: MPMX19_05554 - hypothetical protein, at 262,394 to 264,079
_05554
MPMX19_05555: MPMX19_05555 - Protein-glutamate methylesterase/protein-glutamine glutaminase, at 264,087 to 265,223
_05555
Position (kb) 262
263
264
265 Strain fitness (log2 ratio) -2
-1
0
1 at 261.758 kb on + strand, within MPMX19_05553 at 261.759 kb on - strand, within MPMX19_05553 at 263.600 kb on + strand, within MPMX19_05554 at 263.600 kb on + strand, within MPMX19_05554 at 263.600 kb on + strand, within MPMX19_05554 at 263.601 kb on - strand, within MPMX19_05554 at 263.601 kb on - strand, within MPMX19_05554 at 263.601 kb on - strand, within MPMX19_05554 at 263.601 kb on - strand, within MPMX19_05554 at 263.601 kb on - strand, within MPMX19_05554 at 263.601 kb on - strand, within MPMX19_05554 at 263.601 kb on - strand, within MPMX19_05554 at 263.601 kb on - strand, within MPMX19_05554 at 263.601 kb on - strand, within MPMX19_05554 at 263.974 kb on + strand at 263.975 kb on - strand at 264.422 kb on + strand, within MPMX19_05555 at 264.719 kb on + strand, within MPMX19_05555 at 264.719 kb on + strand, within MPMX19_05555 at 264.719 kb on + strand, within MPMX19_05555 at 264.719 kb on + strand, within MPMX19_05555 at 264.719 kb on + strand, within MPMX19_05555 at 264.719 kb on + strand, within MPMX19_05555 at 264.719 kb on + strand, within MPMX19_05555 at 264.719 kb on + strand, within MPMX19_05555 at 264.719 kb on + strand, within MPMX19_05555 at 264.719 kb on + strand, within MPMX19_05555 at 264.719 kb on + strand, within MPMX19_05555 at 264.719 kb on + strand, within MPMX19_05555 at 264.719 kb on + strand, within MPMX19_05555 at 264.720 kb on - strand, within MPMX19_05555 at 264.720 kb on - strand, within MPMX19_05555 at 264.720 kb on - strand, within MPMX19_05555 at 264.720 kb on - strand, within MPMX19_05555 at 264.720 kb on - strand, within MPMX19_05555 at 264.720 kb on - strand, within MPMX19_05555 at 264.720 kb on - strand, within MPMX19_05555 at 264.720 kb on - strand, within MPMX19_05555 at 264.720 kb on - strand, within MPMX19_05555 at 264.720 kb on - strand, within MPMX19_05555
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 261,758 + MPMX19_05553 0.68 -0.8 261,759 - MPMX19_05553 0.68 -1.4 263,600 + MPMX19_05554 0.72 -0.2 263,600 + MPMX19_05554 0.72 +0.1 263,600 + MPMX19_05554 0.72 -0.3 263,601 - MPMX19_05554 0.72 +0.0 263,601 - MPMX19_05554 0.72 +0.6 263,601 - MPMX19_05554 0.72 +0.2 263,601 - MPMX19_05554 0.72 -0.9 263,601 - MPMX19_05554 0.72 +0.1 263,601 - MPMX19_05554 0.72 +0.0 263,601 - MPMX19_05554 0.72 +0.1 263,601 - MPMX19_05554 0.72 -0.7 263,601 - MPMX19_05554 0.72 -0.7 263,974 + -1.6 263,975 - +0.7 264,422 + MPMX19_05555 0.29 +0.3 264,719 + MPMX19_05555 0.56 -2.2 264,719 + MPMX19_05555 0.56 -0.6 264,719 + MPMX19_05555 0.56 -0.5 264,719 + MPMX19_05555 0.56 -0.9 264,719 + MPMX19_05555 0.56 +0.2 264,719 + MPMX19_05555 0.56 +0.1 264,719 + MPMX19_05555 0.56 -0.4 264,719 + MPMX19_05555 0.56 +0.9 264,719 + MPMX19_05555 0.56 -1.7 264,719 + MPMX19_05555 0.56 -0.4 264,719 + MPMX19_05555 0.56 +0.3 264,719 + MPMX19_05555 0.56 +0.4 264,719 + MPMX19_05555 0.56 +0.6 264,720 - MPMX19_05555 0.56 -0.1 264,720 - MPMX19_05555 0.56 -0.4 264,720 - MPMX19_05555 0.56 +0.3 264,720 - MPMX19_05555 0.56 -0.6 264,720 - MPMX19_05555 0.56 -2.3 264,720 - MPMX19_05555 0.56 -0.8 264,720 - MPMX19_05555 0.56 -0.1 264,720 - MPMX19_05555 0.56 -1.0 264,720 - MPMX19_05555 0.56 -0.4 264,720 - MPMX19_05555 0.56 +1.1
Or see this region's nucleotide sequence