Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05524

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05522 and MPMX19_05523 are separated by 112 nucleotidesMPMX19_05523 and MPMX19_05524 are separated by 76 nucleotidesMPMX19_05524 and MPMX19_05525 are separated by 118 nucleotides MPMX19_05522: MPMX19_05522 - Ubiquinone hydroxylase UbiL, at 229,185 to 230,459 _05522 MPMX19_05523: MPMX19_05523 - Outer-membrane lipoprotein carrier protein, at 230,572 to 231,249 _05523 MPMX19_05524: MPMX19_05524 - hypothetical protein, at 231,326 to 231,961 _05524 MPMX19_05525: MPMX19_05525 - HTH-type transcriptional regulator VirS, at 232,080 to 233,141 _05525 Position (kb) 231 232Strain fitness (log2 ratio) -2 -1 0 1 2at 230.457 kb on + strandat 230.457 kb on + strandat 230.457 kb on + strandat 230.457 kb on + strandat 230.457 kb on + strandat 230.457 kb on + strandat 230.457 kb on + strandat 230.457 kb on + strandat 230.457 kb on + strandat 230.457 kb on + strandat 230.457 kb on + strandat 230.457 kb on + strandat 230.457 kb on + strandat 230.457 kb on + strandat 230.457 kb on + strandat 230.457 kb on + strandat 230.457 kb on + strandat 230.457 kb on + strandat 230.457 kb on + strandat 230.458 kb on - strandat 230.458 kb on - strandat 230.458 kb on - strandat 230.458 kb on - strandat 230.458 kb on - strandat 230.458 kb on - strandat 230.458 kb on - strandat 230.458 kb on - strandat 230.458 kb on - strandat 230.458 kb on - strandat 230.458 kb on - strandat 230.458 kb on - strandat 230.458 kb on - strandat 230.458 kb on - strandat 230.458 kb on - strandat 230.458 kb on - strandat 230.458 kb on - strandat 230.458 kb on - strandat 230.458 kb on - strandat 230.458 kb on - strandat 230.458 kb on - strandat 230.458 kb on - strandat 230.458 kb on - strandat 230.458 kb on - strandat 230.458 kb on - strandat 230.458 kb on - strandat 230.458 kb on - strandat 230.458 kb on - strandat 230.458 kb on - strandat 230.458 kb on - strandat 230.458 kb on - strandat 230.513 kb on + strandat 230.513 kb on + strandat 230.513 kb on + strandat 230.513 kb on + strandat 230.513 kb on + strandat 230.513 kb on + strandat 230.513 kb on + strandat 230.513 kb on + strandat 230.513 kb on + strandat 230.513 kb on + strandat 230.513 kb on + strandat 230.513 kb on + strandat 230.513 kb on + strandat 230.513 kb on + strandat 230.513 kb on + strandat 230.513 kb on + strandat 230.513 kb on + strandat 230.513 kb on + strandat 231.332 kb on + strandat 231.332 kb on + strandat 231.332 kb on + strandat 231.332 kb on + strandat 231.332 kb on + strandat 231.333 kb on - strandat 231.333 kb on - strandat 231.333 kb on - strandat 231.333 kb on - strandat 231.333 kb on - strandat 231.506 kb on + strand, within MPMX19_05524at 231.506 kb on + strand, within MPMX19_05524at 231.506 kb on + strand, within MPMX19_05524at 231.506 kb on + strand, within MPMX19_05524at 231.506 kb on + strand, within MPMX19_05524at 231.506 kb on + strand, within MPMX19_05524at 231.506 kb on + strand, within MPMX19_05524at 231.507 kb on - strand, within MPMX19_05524at 231.507 kb on - strand, within MPMX19_05524at 231.507 kb on - strand, within MPMX19_05524at 231.507 kb on - strand, within MPMX19_05524at 231.507 kb on - strand, within MPMX19_05524at 231.507 kb on - strand, within MPMX19_05524at 231.845 kb on + strand, within MPMX19_05524at 231.845 kb on + strand, within MPMX19_05524at 231.845 kb on + strand, within MPMX19_05524at 231.845 kb on + strand, within MPMX19_05524at 231.845 kb on + strand, within MPMX19_05524at 231.846 kb on - strand, within MPMX19_05524at 231.846 kb on - strand, within MPMX19_05524at 231.846 kb on - strand, within MPMX19_05524at 231.979 kb on + strandat 232.002 kb on + strandat 232.293 kb on + strand, within MPMX19_05525at 232.293 kb on + strand, within MPMX19_05525at 232.293 kb on + strand, within MPMX19_05525at 232.293 kb on + strand, within MPMX19_05525at 232.293 kb on + strand, within MPMX19_05525at 232.293 kb on + strand, within MPMX19_05525at 232.293 kb on + strand, within MPMX19_05525at 232.293 kb on + strand, within MPMX19_05525at 232.293 kb on + strand, within MPMX19_05525at 232.293 kb on + strand, within MPMX19_05525at 232.293 kb on + strand, within MPMX19_05525at 232.294 kb on - strand, within MPMX19_05525at 232.294 kb on - strand, within MPMX19_05525at 232.294 kb on - strand, within MPMX19_05525at 232.294 kb on - strand, within MPMX19_05525at 232.294 kb on - strand, within MPMX19_05525at 232.294 kb on - strand, within MPMX19_05525at 232.294 kb on - strand, within MPMX19_05525at 232.294 kb on - strand, within MPMX19_05525at 232.518 kb on + strand, within MPMX19_05525at 232.519 kb on - strand, within MPMX19_05525at 232.519 kb on - strand, within MPMX19_05525at 232.890 kb on + strand, within MPMX19_05525at 232.890 kb on + strand, within MPMX19_05525at 232.890 kb on + strand, within MPMX19_05525at 232.891 kb on - strand, within MPMX19_05525at 232.891 kb on - strand, within MPMX19_05525at 232.891 kb on - strand, within MPMX19_05525at 232.891 kb on - strand, within MPMX19_05525at 232.891 kb on - strand, within MPMX19_05525at 232.891 kb on - strand, within MPMX19_05525at 232.891 kb on - strand, within MPMX19_05525at 232.891 kb on - strand, within MPMX19_05525at 232.891 kb on - strand, within MPMX19_05525at 232.891 kb on - strand, within MPMX19_05525at 232.891 kb on - strand, within MPMX19_05525

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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230,457 + -1.2
230,457 + -0.2
230,457 + -0.5
230,457 + -0.6
230,457 + -0.5
230,457 + -0.9
230,457 + +0.8
230,457 + -0.2
230,457 + -0.3
230,457 + -1.3
230,457 + -1.3
230,457 + -0.2
230,457 + +0.3
230,457 + +0.3
230,457 + -1.6
230,457 + +0.8
230,457 + +0.1
230,457 + -0.4
230,457 + +0.3
230,458 - -1.3
230,458 - -0.9
230,458 - +1.4
230,458 - -0.2
230,458 - -0.5
230,458 - -0.8
230,458 - -0.3
230,458 - -0.2
230,458 - +0.4
230,458 - -0.3
230,458 - +0.8
230,458 - -0.4
230,458 - -2.1
230,458 - -2.2
230,458 - -1.0
230,458 - +1.6
230,458 - -0.2
230,458 - +0.3
230,458 - -0.3
230,458 - -0.8
230,458 - +0.1
230,458 - -1.6
230,458 - -0.3
230,458 - -1.7
230,458 - -0.4
230,458 - +0.3
230,458 - -2.1
230,458 - -2.0
230,458 - -1.1
230,458 - +0.1
230,458 - -0.7
230,513 + -0.8
230,513 + -0.4
230,513 + -1.0
230,513 + -0.4
230,513 + -0.5
230,513 + +0.1
230,513 + +1.1
230,513 + -1.2
230,513 + -1.1
230,513 + +0.3
230,513 + -0.2
230,513 + -0.6
230,513 + -0.7
230,513 + -0.1
230,513 + -1.0
230,513 + -0.7
230,513 + -1.2
230,513 + -0.1
231,332 + -0.2
231,332 + -0.9
231,332 + -0.1
231,332 + -0.6
231,332 + +1.0
231,333 - -1.4
231,333 - -1.9
231,333 - +0.6
231,333 - -1.6
231,333 - -1.8
231,506 + MPMX19_05524 0.28 -1.2
231,506 + MPMX19_05524 0.28 -0.4
231,506 + MPMX19_05524 0.28 -0.4
231,506 + MPMX19_05524 0.28 -1.0
231,506 + MPMX19_05524 0.28 -1.2
231,506 + MPMX19_05524 0.28 -0.6
231,506 + MPMX19_05524 0.28 +0.0
231,507 - MPMX19_05524 0.28 -1.6
231,507 - MPMX19_05524 0.28 +0.7
231,507 - MPMX19_05524 0.28 -0.8
231,507 - MPMX19_05524 0.28 -1.4
231,507 - MPMX19_05524 0.28 -0.8
231,507 - MPMX19_05524 0.28 -0.4
231,845 + MPMX19_05524 0.82 -1.7
231,845 + MPMX19_05524 0.82 -0.9
231,845 + MPMX19_05524 0.82 -0.9
231,845 + MPMX19_05524 0.82 -2.0
231,845 + MPMX19_05524 0.82 -0.5
231,846 - MPMX19_05524 0.82 +0.6
231,846 - MPMX19_05524 0.82 -0.9
231,846 - MPMX19_05524 0.82 -1.7
231,979 + -0.4
232,002 + +1.3
232,293 + MPMX19_05525 0.20 +0.6
232,293 + MPMX19_05525 0.20 +0.4
232,293 + MPMX19_05525 0.20 +0.0
232,293 + MPMX19_05525 0.20 -0.4
232,293 + MPMX19_05525 0.20 -0.8
232,293 + MPMX19_05525 0.20 -0.3
232,293 + MPMX19_05525 0.20 +2.1
232,293 + MPMX19_05525 0.20 +2.1
232,293 + MPMX19_05525 0.20 -1.0
232,293 + MPMX19_05525 0.20 -0.3
232,293 + MPMX19_05525 0.20 +2.1
232,294 - MPMX19_05525 0.20 -1.0
232,294 - MPMX19_05525 0.20 +0.0
232,294 - MPMX19_05525 0.20 +0.9
232,294 - MPMX19_05525 0.20 -0.4
232,294 - MPMX19_05525 0.20 -0.8
232,294 - MPMX19_05525 0.20 -1.9
232,294 - MPMX19_05525 0.20 -0.6
232,294 - MPMX19_05525 0.20 -0.1
232,518 + MPMX19_05525 0.41 -0.7
232,519 - MPMX19_05525 0.41 -0.9
232,519 - MPMX19_05525 0.41 -0.5
232,890 + MPMX19_05525 0.76 -0.2
232,890 + MPMX19_05525 0.76 -1.2
232,890 + MPMX19_05525 0.76 -1.2
232,891 - MPMX19_05525 0.76 +0.7
232,891 - MPMX19_05525 0.76 -0.4
232,891 - MPMX19_05525 0.76 -0.8
232,891 - MPMX19_05525 0.76 -1.6
232,891 - MPMX19_05525 0.76 -0.4
232,891 - MPMX19_05525 0.76 -0.4
232,891 - MPMX19_05525 0.76 +1.3
232,891 - MPMX19_05525 0.76 +0.9
232,891 - MPMX19_05525 0.76 -0.3
232,891 - MPMX19_05525 0.76 +1.9
232,891 - MPMX19_05525 0.76 +0.4

Or see this region's nucleotide sequence