Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05517

Experiment: NL-CCM, start OD=0.3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_05515 and MPMX19_05516 are separated by 89 nucleotidesMPMX19_05516 and MPMX19_05517 overlap by 8 nucleotidesMPMX19_05517 and MPMX19_05518 are separated by 329 nucleotides MPMX19_05515: MPMX19_05515 - High-affinity zinc uptake system protein ZnuA, at 220,612 to 221,583 _05515 MPMX19_05516: MPMX19_05516 - Zinc import ATP-binding protein ZnuC, at 221,673 to 222,473 _05516 MPMX19_05517: MPMX19_05517 - High-affinity zinc uptake system membrane protein ZnuB, at 222,466 to 223,251 _05517 MPMX19_05518: MPMX19_05518 - hypothetical protein, at 223,581 to 226,181 _05518 Position (kb) 222 223 224Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 221.597 kb on + strandat 221.597 kb on + strandat 221.598 kb on - strandat 221.598 kb on - strandat 221.632 kb on - strandat 221.632 kb on - strandat 221.664 kb on + strandat 221.670 kb on - strandat 221.670 kb on - strandat 221.685 kb on + strandat 221.686 kb on - strandat 221.699 kb on + strandat 221.699 kb on + strandat 221.700 kb on - strandat 221.700 kb on - strandat 221.700 kb on - strandat 221.700 kb on - strandat 221.925 kb on + strand, within MPMX19_05516at 221.925 kb on + strand, within MPMX19_05516at 221.925 kb on + strand, within MPMX19_05516at 221.925 kb on + strand, within MPMX19_05516at 221.925 kb on + strand, within MPMX19_05516at 221.925 kb on + strand, within MPMX19_05516at 221.926 kb on - strand, within MPMX19_05516at 221.926 kb on - strand, within MPMX19_05516at 221.926 kb on - strand, within MPMX19_05516at 221.926 kb on - strand, within MPMX19_05516at 222.351 kb on + strand, within MPMX19_05516at 222.351 kb on + strand, within MPMX19_05516at 222.351 kb on + strand, within MPMX19_05516at 222.351 kb on + strand, within MPMX19_05516at 222.351 kb on + strand, within MPMX19_05516at 222.352 kb on - strand, within MPMX19_05516at 222.352 kb on - strand, within MPMX19_05516at 222.352 kb on - strand, within MPMX19_05516at 222.393 kb on + strand, within MPMX19_05516at 222.393 kb on + strand, within MPMX19_05516at 222.393 kb on + strand, within MPMX19_05516at 222.393 kb on + strand, within MPMX19_05516at 222.393 kb on + strand, within MPMX19_05516at 222.393 kb on + strand, within MPMX19_05516at 222.393 kb on + strand, within MPMX19_05516at 222.393 kb on + strand, within MPMX19_05516at 222.393 kb on + strand, within MPMX19_05516at 222.393 kb on + strand, within MPMX19_05516at 222.393 kb on + strand, within MPMX19_05516at 222.393 kb on + strand, within MPMX19_05516at 222.393 kb on + strand, within MPMX19_05516at 222.393 kb on + strand, within MPMX19_05516at 222.393 kb on + strand, within MPMX19_05516at 222.393 kb on + strand, within MPMX19_05516at 222.393 kb on + strand, within MPMX19_05516at 222.393 kb on + strand, within MPMX19_05516at 222.393 kb on + strand, within MPMX19_05516at 222.393 kb on + strand, within MPMX19_05516at 222.394 kb on - strandat 222.394 kb on - strandat 222.394 kb on - strandat 222.394 kb on - strandat 222.394 kb on - strandat 222.394 kb on - strandat 222.394 kb on - strandat 222.394 kb on - strandat 222.394 kb on - strandat 222.394 kb on - strandat 222.394 kb on - strandat 222.394 kb on - strandat 222.394 kb on - strandat 222.562 kb on + strand, within MPMX19_05517at 222.562 kb on + strand, within MPMX19_05517at 222.562 kb on + strand, within MPMX19_05517at 222.562 kb on + strand, within MPMX19_05517at 222.562 kb on + strand, within MPMX19_05517at 222.563 kb on - strand, within MPMX19_05517at 222.805 kb on + strand, within MPMX19_05517at 222.805 kb on + strand, within MPMX19_05517at 222.805 kb on + strand, within MPMX19_05517at 222.805 kb on + strand, within MPMX19_05517at 222.806 kb on - strand, within MPMX19_05517at 222.806 kb on - strand, within MPMX19_05517at 222.806 kb on - strand, within MPMX19_05517at 222.806 kb on - strand, within MPMX19_05517at 222.856 kb on + strand, within MPMX19_05517at 222.856 kb on + strand, within MPMX19_05517at 222.856 kb on + strand, within MPMX19_05517at 222.856 kb on + strand, within MPMX19_05517at 222.856 kb on + strand, within MPMX19_05517at 222.856 kb on + strand, within MPMX19_05517at 222.856 kb on + strand, within MPMX19_05517at 222.856 kb on + strand, within MPMX19_05517at 222.856 kb on + strand, within MPMX19_05517at 222.857 kb on - strand, within MPMX19_05517at 222.857 kb on - strand, within MPMX19_05517at 222.857 kb on - strand, within MPMX19_05517at 222.857 kb on - strand, within MPMX19_05517at 222.857 kb on - strand, within MPMX19_05517at 222.857 kb on - strand, within MPMX19_05517at 222.857 kb on - strand, within MPMX19_05517at 222.857 kb on - strand, within MPMX19_05517at 222.857 kb on - strand, within MPMX19_05517at 223.343 kb on + strandat 223.343 kb on + strandat 223.344 kb on - strandat 223.344 kb on - strandat 223.344 kb on - strandat 223.344 kb on - strandat 223.481 kb on + strandat 223.481 kb on + strandat 223.481 kb on + strandat 223.481 kb on + strandat 223.481 kb on + strandat 223.481 kb on + strandat 223.481 kb on + strandat 223.481 kb on + strandat 223.482 kb on - strandat 223.482 kb on - strandat 223.482 kb on - strandat 223.482 kb on - strandat 223.482 kb on - strandat 223.482 kb on - strandat 223.482 kb on - strandat 223.482 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
remove
221,597 + +0.0
221,597 + -0.3
221,598 - -0.3
221,598 - -0.4
221,632 - -0.7
221,632 - -0.2
221,664 + -0.2
221,670 - +0.9
221,670 - -0.3
221,685 + -0.8
221,686 - +0.7
221,699 + -1.2
221,699 + +0.1
221,700 - -0.9
221,700 - -0.7
221,700 - +0.3
221,700 - -0.4
221,925 + MPMX19_05516 0.31 -1.0
221,925 + MPMX19_05516 0.31 +0.1
221,925 + MPMX19_05516 0.31 -0.5
221,925 + MPMX19_05516 0.31 -0.9
221,925 + MPMX19_05516 0.31 +1.5
221,925 + MPMX19_05516 0.31 -1.3
221,926 - MPMX19_05516 0.32 +0.3
221,926 - MPMX19_05516 0.32 +2.1
221,926 - MPMX19_05516 0.32 -1.1
221,926 - MPMX19_05516 0.32 -1.2
222,351 + MPMX19_05516 0.85 -1.3
222,351 + MPMX19_05516 0.85 -1.9
222,351 + MPMX19_05516 0.85 -0.9
222,351 + MPMX19_05516 0.85 +0.8
222,351 + MPMX19_05516 0.85 -0.2
222,352 - MPMX19_05516 0.85 -0.3
222,352 - MPMX19_05516 0.85 -0.1
222,352 - MPMX19_05516 0.85 -0.0
222,393 + MPMX19_05516 0.90 +1.8
222,393 + MPMX19_05516 0.90 -0.2
222,393 + MPMX19_05516 0.90 +0.6
222,393 + MPMX19_05516 0.90 -0.9
222,393 + MPMX19_05516 0.90 -2.2
222,393 + MPMX19_05516 0.90 +0.0
222,393 + MPMX19_05516 0.90 -0.6
222,393 + MPMX19_05516 0.90 +0.7
222,393 + MPMX19_05516 0.90 +1.1
222,393 + MPMX19_05516 0.90 +1.7
222,393 + MPMX19_05516 0.90 -0.3
222,393 + MPMX19_05516 0.90 +0.5
222,393 + MPMX19_05516 0.90 -1.4
222,393 + MPMX19_05516 0.90 -0.5
222,393 + MPMX19_05516 0.90 -0.3
222,393 + MPMX19_05516 0.90 -1.4
222,393 + MPMX19_05516 0.90 -2.1
222,393 + MPMX19_05516 0.90 -1.2
222,393 + MPMX19_05516 0.90 -2.8
222,393 + MPMX19_05516 0.90 -1.9
222,394 - -0.3
222,394 - -0.9
222,394 - +1.1
222,394 - -0.0
222,394 - -0.1
222,394 - +0.1
222,394 - -2.7
222,394 - -0.7
222,394 - -1.0
222,394 - -0.7
222,394 - -0.0
222,394 - -0.1
222,394 - -1.8
222,562 + MPMX19_05517 0.12 -0.4
222,562 + MPMX19_05517 0.12 +0.1
222,562 + MPMX19_05517 0.12 -0.8
222,562 + MPMX19_05517 0.12 -1.7
222,562 + MPMX19_05517 0.12 -1.4
222,563 - MPMX19_05517 0.12 +0.6
222,805 + MPMX19_05517 0.43 -0.4
222,805 + MPMX19_05517 0.43 +0.6
222,805 + MPMX19_05517 0.43 -0.4
222,805 + MPMX19_05517 0.43 +1.4
222,806 - MPMX19_05517 0.43 -0.2
222,806 - MPMX19_05517 0.43 +0.8
222,806 - MPMX19_05517 0.43 +0.3
222,806 - MPMX19_05517 0.43 -0.7
222,856 + MPMX19_05517 0.50 -2.9
222,856 + MPMX19_05517 0.50 +0.1
222,856 + MPMX19_05517 0.50 -0.3
222,856 + MPMX19_05517 0.50 -2.0
222,856 + MPMX19_05517 0.50 -0.9
222,856 + MPMX19_05517 0.50 -0.9
222,856 + MPMX19_05517 0.50 -0.4
222,856 + MPMX19_05517 0.50 -0.5
222,856 + MPMX19_05517 0.50 -1.3
222,857 - MPMX19_05517 0.50 -0.5
222,857 - MPMX19_05517 0.50 +0.1
222,857 - MPMX19_05517 0.50 -0.4
222,857 - MPMX19_05517 0.50 -1.7
222,857 - MPMX19_05517 0.50 -0.4
222,857 - MPMX19_05517 0.50 -2.0
222,857 - MPMX19_05517 0.50 +0.4
222,857 - MPMX19_05517 0.50 -1.2
222,857 - MPMX19_05517 0.50 -0.7
223,343 + -0.0
223,343 + -0.9
223,344 - -1.0
223,344 - +1.1
223,344 - +0.9
223,344 - +0.8
223,481 + -1.8
223,481 + -0.0
223,481 + -2.4
223,481 + -2.6
223,481 + +0.3
223,481 + +1.1
223,481 + +0.3
223,481 + -1.0
223,482 - -0.9
223,482 - -0.7
223,482 - -1.7
223,482 - -1.0
223,482 - +0.1
223,482 - +0.3
223,482 - +0.6
223,482 - -1.0

Or see this region's nucleotide sequence