Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05495 and MPMX19_05496 are separated by 371 nucleotides MPMX19_05496 and MPMX19_05497 are separated by 1 nucleotides MPMX19_05497 and MPMX19_05498 are separated by 3 nucleotides
MPMX19_05495: MPMX19_05495 - hypothetical protein, at 198,552 to 200,225
_05495
MPMX19_05496: MPMX19_05496 - hypothetical protein, at 200,597 to 200,950
_05496
MPMX19_05497: MPMX19_05497 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 200,952 to 201,662
_05497
MPMX19_05498: MPMX19_05498 - Lipopolysaccharide export system ATP-binding protein LptB, at 201,666 to 202,565
_05498
Position (kb) 200
201 Strain fitness (log2 ratio) -2
-1
0
1 at 199.876 kb on + strand, within MPMX19_05495 at 199.876 kb on + strand, within MPMX19_05495 at 199.876 kb on + strand, within MPMX19_05495 at 199.876 kb on + strand, within MPMX19_05495 at 199.876 kb on + strand, within MPMX19_05495 at 199.876 kb on + strand, within MPMX19_05495 at 199.876 kb on + strand, within MPMX19_05495 at 199.876 kb on + strand, within MPMX19_05495 at 199.876 kb on + strand, within MPMX19_05495 at 199.876 kb on + strand, within MPMX19_05495 at 199.876 kb on + strand, within MPMX19_05495 at 199.876 kb on + strand, within MPMX19_05495 at 199.876 kb on + strand, within MPMX19_05495 at 199.877 kb on - strand, within MPMX19_05495 at 199.877 kb on - strand, within MPMX19_05495 at 199.877 kb on - strand, within MPMX19_05495 at 199.877 kb on - strand, within MPMX19_05495 at 199.877 kb on - strand, within MPMX19_05495 at 199.877 kb on - strand, within MPMX19_05495 at 199.877 kb on - strand, within MPMX19_05495 at 199.877 kb on - strand, within MPMX19_05495 at 199.877 kb on - strand, within MPMX19_05495 at 200.092 kb on + strand at 200.092 kb on + strand at 200.092 kb on + strand at 200.092 kb on + strand at 200.092 kb on + strand at 200.092 kb on + strand at 200.092 kb on + strand at 200.092 kb on + strand at 200.092 kb on + strand at 200.092 kb on + strand at 200.093 kb on - strand at 200.093 kb on - strand at 200.093 kb on - strand at 200.093 kb on - strand at 200.093 kb on - strand at 200.093 kb on - strand at 200.288 kb on + strand at 200.289 kb on - strand at 200.289 kb on - strand at 200.355 kb on + strand at 200.355 kb on + strand at 200.381 kb on + strand at 200.389 kb on - strand at 200.393 kb on + strand at 200.564 kb on + strand at 200.649 kb on + strand, within MPMX19_05496 at 200.649 kb on + strand, within MPMX19_05496 at 200.649 kb on + strand, within MPMX19_05496 at 200.649 kb on + strand, within MPMX19_05496 at 200.650 kb on - strand, within MPMX19_05496 at 200.661 kb on + strand, within MPMX19_05496 at 200.662 kb on - strand, within MPMX19_05496 at 200.820 kb on + strand, within MPMX19_05496 at 200.820 kb on + strand, within MPMX19_05496 at 200.820 kb on + strand, within MPMX19_05496 at 200.820 kb on + strand, within MPMX19_05496 at 200.972 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 199,876 + MPMX19_05495 0.79 -0.5 199,876 + MPMX19_05495 0.79 +0.1 199,876 + MPMX19_05495 0.79 +0.3 199,876 + MPMX19_05495 0.79 -0.6 199,876 + MPMX19_05495 0.79 +0.4 199,876 + MPMX19_05495 0.79 +0.9 199,876 + MPMX19_05495 0.79 -1.6 199,876 + MPMX19_05495 0.79 -0.7 199,876 + MPMX19_05495 0.79 -0.3 199,876 + MPMX19_05495 0.79 -2.2 199,876 + MPMX19_05495 0.79 -1.2 199,876 + MPMX19_05495 0.79 -1.2 199,876 + MPMX19_05495 0.79 +0.8 199,877 - MPMX19_05495 0.79 -1.1 199,877 - MPMX19_05495 0.79 -1.0 199,877 - MPMX19_05495 0.79 -0.3 199,877 - MPMX19_05495 0.79 +0.3 199,877 - MPMX19_05495 0.79 +0.7 199,877 - MPMX19_05495 0.79 -0.1 199,877 - MPMX19_05495 0.79 -0.1 199,877 - MPMX19_05495 0.79 -0.7 199,877 - MPMX19_05495 0.79 +1.6 200,092 + -1.4 200,092 + +1.6 200,092 + +0.3 200,092 + -2.7 200,092 + -1.6 200,092 + +0.1 200,092 + -1.7 200,092 + +0.6 200,092 + -2.0 200,092 + +0.7 200,093 - -0.5 200,093 - -1.9 200,093 - -0.1 200,093 - -0.3 200,093 - -1.7 200,093 - -1.0 200,288 + -0.4 200,289 - +0.5 200,289 - -2.5 200,355 + -1.3 200,355 + -1.9 200,381 + -1.0 200,389 - +0.5 200,393 + +1.1 200,564 + -2.0 200,649 + MPMX19_05496 0.15 +0.5 200,649 + MPMX19_05496 0.15 -2.0 200,649 + MPMX19_05496 0.15 -0.0 200,649 + MPMX19_05496 0.15 -0.4 200,650 - MPMX19_05496 0.15 -1.7 200,661 + MPMX19_05496 0.18 -1.2 200,662 - MPMX19_05496 0.18 -1.3 200,820 + MPMX19_05496 0.63 +0.2 200,820 + MPMX19_05496 0.63 -0.8 200,820 + MPMX19_05496 0.63 -1.2 200,820 + MPMX19_05496 0.63 -0.2 200,972 - -2.2
Or see this region's nucleotide sequence