Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05494

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05493 and MPMX19_05494 are separated by 289 nucleotidesMPMX19_05494 and MPMX19_05495 are separated by 184 nucleotides MPMX19_05493: MPMX19_05493 - hypothetical protein, at 195,181 to 196,899 _05493 MPMX19_05494: MPMX19_05494 - Acyl-CoA dehydrogenase, at 197,189 to 198,367 _05494 MPMX19_05495: MPMX19_05495 - hypothetical protein, at 198,552 to 200,225 _05495 Position (kb) 197 198 199Strain fitness (log2 ratio) -3 -2 -1 0 1at 196.556 kb on + strand, within MPMX19_05493at 196.556 kb on + strand, within MPMX19_05493at 196.556 kb on + strand, within MPMX19_05493at 196.557 kb on - strand, within MPMX19_05493at 196.557 kb on - strand, within MPMX19_05493at 196.557 kb on - strand, within MPMX19_05493at 196.557 kb on - strand, within MPMX19_05493at 196.557 kb on - strand, within MPMX19_05493at 196.647 kb on + strand, within MPMX19_05493at 196.647 kb on + strand, within MPMX19_05493at 196.647 kb on + strand, within MPMX19_05493at 196.694 kb on - strand, within MPMX19_05493at 196.706 kb on + strand, within MPMX19_05493at 196.706 kb on + strand, within MPMX19_05493at 196.706 kb on + strand, within MPMX19_05493at 196.706 kb on + strand, within MPMX19_05493at 196.706 kb on + strand, within MPMX19_05493at 196.706 kb on + strand, within MPMX19_05493at 196.706 kb on + strand, within MPMX19_05493at 196.706 kb on + strand, within MPMX19_05493at 196.707 kb on - strand, within MPMX19_05493at 196.707 kb on - strand, within MPMX19_05493at 196.707 kb on - strand, within MPMX19_05493at 196.707 kb on - strand, within MPMX19_05493at 196.707 kb on - strand, within MPMX19_05493at 196.707 kb on - strand, within MPMX19_05493at 196.707 kb on - strand, within MPMX19_05493at 196.707 kb on - strand, within MPMX19_05493at 196.830 kb on + strandat 196.830 kb on + strandat 196.931 kb on - strandat 196.954 kb on + strandat 196.954 kb on + strandat 196.955 kb on - strandat 196.955 kb on - strandat 196.964 kb on + strandat 196.964 kb on + strandat 197.003 kb on - strandat 197.027 kb on + strandat 197.047 kb on + strandat 197.277 kb on - strandat 197.277 kb on - strandat 197.396 kb on + strand, within MPMX19_05494at 197.396 kb on + strand, within MPMX19_05494at 197.396 kb on + strand, within MPMX19_05494at 197.396 kb on + strand, within MPMX19_05494at 197.396 kb on + strand, within MPMX19_05494at 197.396 kb on + strand, within MPMX19_05494at 197.396 kb on + strand, within MPMX19_05494at 197.396 kb on + strand, within MPMX19_05494at 197.396 kb on + strand, within MPMX19_05494at 197.396 kb on + strand, within MPMX19_05494at 197.396 kb on + strand, within MPMX19_05494at 197.396 kb on + strand, within MPMX19_05494at 197.397 kb on - strand, within MPMX19_05494at 197.397 kb on - strand, within MPMX19_05494at 197.397 kb on - strand, within MPMX19_05494at 197.397 kb on - strand, within MPMX19_05494at 197.426 kb on + strand, within MPMX19_05494at 197.516 kb on + strand, within MPMX19_05494at 197.516 kb on + strand, within MPMX19_05494at 197.516 kb on + strand, within MPMX19_05494at 197.516 kb on + strand, within MPMX19_05494at 197.516 kb on + strand, within MPMX19_05494at 197.516 kb on + strand, within MPMX19_05494at 197.517 kb on - strand, within MPMX19_05494at 197.517 kb on - strand, within MPMX19_05494at 197.517 kb on - strand, within MPMX19_05494at 197.522 kb on + strand, within MPMX19_05494at 197.522 kb on + strand, within MPMX19_05494at 197.523 kb on - strand, within MPMX19_05494at 197.663 kb on + strand, within MPMX19_05494at 197.663 kb on + strand, within MPMX19_05494at 197.664 kb on - strand, within MPMX19_05494at 198.003 kb on - strand, within MPMX19_05494at 198.296 kb on + strandat 198.296 kb on + strandat 198.296 kb on + strandat 198.296 kb on + strandat 198.296 kb on + strandat 198.296 kb on + strandat 198.296 kb on + strandat 198.296 kb on + strandat 198.296 kb on + strandat 198.296 kb on + strandat 198.296 kb on + strandat 198.296 kb on + strandat 198.296 kb on + strandat 198.296 kb on + strandat 198.296 kb on + strandat 198.296 kb on + strandat 198.296 kb on + strandat 198.296 kb on + strandat 198.296 kb on + strandat 198.296 kb on + strandat 198.296 kb on + strandat 198.296 kb on + strandat 198.297 kb on - strandat 198.365 kb on + strandat 198.365 kb on + strandat 198.365 kb on + strandat 198.365 kb on + strandat 198.365 kb on + strandat 198.365 kb on + strandat 198.365 kb on + strandat 198.365 kb on + strandat 198.365 kb on + strandat 198.365 kb on + strandat 198.365 kb on + strandat 198.366 kb on - strandat 198.366 kb on - strandat 198.366 kb on - strandat 198.366 kb on - strandat 198.366 kb on - strandat 198.366 kb on - strandat 198.373 kb on + strandat 198.373 kb on + strandat 198.373 kb on + strandat 198.373 kb on + strandat 198.373 kb on + strandat 198.373 kb on + strandat 198.373 kb on + strandat 198.373 kb on + strandat 198.374 kb on - strandat 198.374 kb on - strandat 198.374 kb on - strandat 198.374 kb on - strandat 198.374 kb on - strandat 198.374 kb on - strandat 198.374 kb on - strandat 198.374 kb on - strandat 198.374 kb on - strandat 198.374 kb on - strandat 198.374 kb on - strandat 198.374 kb on - strandat 198.374 kb on - strandat 198.374 kb on - strandat 198.374 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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196,556 + MPMX19_05493 0.80 -0.4
196,556 + MPMX19_05493 0.80 -1.3
196,556 + MPMX19_05493 0.80 -0.4
196,557 - MPMX19_05493 0.80 +0.1
196,557 - MPMX19_05493 0.80 -0.4
196,557 - MPMX19_05493 0.80 -0.1
196,557 - MPMX19_05493 0.80 +0.9
196,557 - MPMX19_05493 0.80 -1.1
196,647 + MPMX19_05493 0.85 -0.2
196,647 + MPMX19_05493 0.85 -1.6
196,647 + MPMX19_05493 0.85 -1.2
196,694 - MPMX19_05493 0.88 +1.3
196,706 + MPMX19_05493 0.89 -1.0
196,706 + MPMX19_05493 0.89 +0.6
196,706 + MPMX19_05493 0.89 -0.1
196,706 + MPMX19_05493 0.89 -0.9
196,706 + MPMX19_05493 0.89 -0.8
196,706 + MPMX19_05493 0.89 -1.3
196,706 + MPMX19_05493 0.89 -0.3
196,706 + MPMX19_05493 0.89 -0.7
196,707 - MPMX19_05493 0.89 -0.4
196,707 - MPMX19_05493 0.89 -1.0
196,707 - MPMX19_05493 0.89 -0.5
196,707 - MPMX19_05493 0.89 -1.0
196,707 - MPMX19_05493 0.89 -3.0
196,707 - MPMX19_05493 0.89 -0.7
196,707 - MPMX19_05493 0.89 -0.4
196,707 - MPMX19_05493 0.89 +0.3
196,830 + -0.6
196,830 + +0.7
196,931 - +1.6
196,954 + -0.1
196,954 + -1.2
196,955 - -1.0
196,955 - -1.0
196,964 + +0.5
196,964 + -0.0
197,003 - -0.7
197,027 + -1.6
197,047 + -0.7
197,277 - -0.2
197,277 - -1.7
197,396 + MPMX19_05494 0.18 +1.6
197,396 + MPMX19_05494 0.18 -0.3
197,396 + MPMX19_05494 0.18 -0.5
197,396 + MPMX19_05494 0.18 -0.7
197,396 + MPMX19_05494 0.18 -1.1
197,396 + MPMX19_05494 0.18 -1.2
197,396 + MPMX19_05494 0.18 -1.8
197,396 + MPMX19_05494 0.18 -1.3
197,396 + MPMX19_05494 0.18 -0.8
197,396 + MPMX19_05494 0.18 -0.8
197,396 + MPMX19_05494 0.18 -1.2
197,396 + MPMX19_05494 0.18 +0.6
197,397 - MPMX19_05494 0.18 -0.2
197,397 - MPMX19_05494 0.18 +1.3
197,397 - MPMX19_05494 0.18 -2.4
197,397 - MPMX19_05494 0.18 -0.4
197,426 + MPMX19_05494 0.20 -1.0
197,516 + MPMX19_05494 0.28 +0.1
197,516 + MPMX19_05494 0.28 -0.5
197,516 + MPMX19_05494 0.28 -1.0
197,516 + MPMX19_05494 0.28 -0.8
197,516 + MPMX19_05494 0.28 -0.9
197,516 + MPMX19_05494 0.28 -0.4
197,517 - MPMX19_05494 0.28 -0.2
197,517 - MPMX19_05494 0.28 -1.3
197,517 - MPMX19_05494 0.28 -1.8
197,522 + MPMX19_05494 0.28 -0.5
197,522 + MPMX19_05494 0.28 +0.1
197,523 - MPMX19_05494 0.28 +0.1
197,663 + MPMX19_05494 0.40 -2.0
197,663 + MPMX19_05494 0.40 -0.6
197,664 - MPMX19_05494 0.40 -0.6
198,003 - MPMX19_05494 0.69 -0.9
198,296 + -0.7
198,296 + -0.8
198,296 + +1.4
198,296 + -0.4
198,296 + -0.2
198,296 + -0.9
198,296 + +0.0
198,296 + -1.8
198,296 + -0.7
198,296 + -1.3
198,296 + -1.7
198,296 + -0.6
198,296 + -1.4
198,296 + -2.1
198,296 + -1.0
198,296 + -1.4
198,296 + -0.3
198,296 + -0.6
198,296 + -0.6
198,296 + -0.2
198,296 + -0.4
198,296 + +0.2
198,297 - -0.0
198,365 + +0.8
198,365 + -1.0
198,365 + -0.6
198,365 + -0.3
198,365 + -1.7
198,365 + -0.4
198,365 + +0.1
198,365 + +0.1
198,365 + +1.4
198,365 + -1.1
198,365 + -1.3
198,366 - +0.1
198,366 - -0.2
198,366 - +0.2
198,366 - -0.5
198,366 - +0.1
198,366 - +0.8
198,373 + -0.8
198,373 + +0.3
198,373 + -2.4
198,373 + -2.4
198,373 + -0.4
198,373 + -0.7
198,373 + -0.4
198,373 + -0.2
198,374 - -1.4
198,374 - -0.7
198,374 - -2.3
198,374 - -1.4
198,374 - -0.2
198,374 - -2.3
198,374 - -1.8
198,374 - -1.8
198,374 - -0.7
198,374 - -0.4
198,374 - -0.5
198,374 - -0.1
198,374 - +0.0
198,374 - +0.6
198,374 - +0.7

Or see this region's nucleotide sequence