Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05471 and MPMX19_05472 are separated by 88 nucleotides MPMX19_05472 and MPMX19_05473 are separated by 244 nucleotides MPMX19_05473 and MPMX19_05474 overlap by 4 nucleotides MPMX19_05474 and MPMX19_05475 overlap by 4 nucleotides
MPMX19_05471: MPMX19_05471 - Thioredoxin 2, at 170,291 to 170,791
_05471
MPMX19_05472: MPMX19_05472 - hypothetical protein, at 170,880 to 171,134
_05472
MPMX19_05473: MPMX19_05473 - hypothetical protein, at 171,379 to 171,885
_05473
MPMX19_05474: MPMX19_05474 - hypothetical protein, at 171,882 to 172,325
_05474
MPMX19_05475: MPMX19_05475 - hypothetical protein, at 172,322 to 172,981
_05475
Position (kb) 171
172 Strain fitness (log2 ratio) -2
-1
0
1
2 at 170.566 kb on + strand, within MPMX19_05471 at 170.567 kb on - strand, within MPMX19_05471 at 170.832 kb on + strand at 170.832 kb on + strand at 170.832 kb on + strand at 170.832 kb on + strand at 170.832 kb on + strand at 170.832 kb on + strand at 170.832 kb on + strand at 170.832 kb on + strand at 170.832 kb on + strand at 170.832 kb on + strand at 170.832 kb on + strand at 170.832 kb on + strand at 170.833 kb on - strand at 170.833 kb on - strand at 170.833 kb on - strand at 170.833 kb on - strand at 170.833 kb on - strand at 170.833 kb on - strand at 170.833 kb on - strand at 170.833 kb on - strand at 170.833 kb on - strand at 170.881 kb on + strand at 170.882 kb on - strand at 170.882 kb on - strand at 170.926 kb on + strand, within MPMX19_05472 at 170.926 kb on + strand, within MPMX19_05472 at 170.926 kb on + strand, within MPMX19_05472 at 170.926 kb on + strand, within MPMX19_05472 at 170.926 kb on + strand, within MPMX19_05472 at 170.926 kb on + strand, within MPMX19_05472 at 170.927 kb on - strand, within MPMX19_05472 at 170.927 kb on - strand, within MPMX19_05472 at 170.927 kb on - strand, within MPMX19_05472 at 170.927 kb on - strand, within MPMX19_05472 at 170.927 kb on - strand, within MPMX19_05472 at 170.927 kb on - strand, within MPMX19_05472 at 170.927 kb on - strand, within MPMX19_05472 at 170.995 kb on + strand, within MPMX19_05472 at 170.995 kb on + strand, within MPMX19_05472 at 170.996 kb on - strand, within MPMX19_05472 at 171.052 kb on + strand, within MPMX19_05472 at 171.195 kb on + strand at 171.196 kb on - strand at 171.223 kb on - strand at 171.238 kb on + strand at 171.238 kb on + strand at 171.238 kb on + strand at 171.238 kb on + strand at 171.239 kb on - strand at 171.239 kb on - strand at 171.239 kb on - strand at 171.299 kb on + strand at 171.299 kb on + strand at 171.299 kb on + strand at 171.299 kb on + strand at 171.299 kb on + strand at 171.300 kb on - strand at 171.300 kb on - strand at 171.300 kb on - strand at 171.300 kb on - strand at 171.300 kb on - strand at 171.300 kb on - strand at 171.602 kb on + strand, within MPMX19_05473 at 171.602 kb on + strand, within MPMX19_05473 at 171.603 kb on - strand, within MPMX19_05473 at 171.603 kb on - strand, within MPMX19_05473 at 171.603 kb on - strand, within MPMX19_05473 at 171.623 kb on + strand, within MPMX19_05473 at 171.623 kb on + strand, within MPMX19_05473 at 171.623 kb on + strand, within MPMX19_05473 at 171.623 kb on + strand, within MPMX19_05473 at 171.623 kb on + strand, within MPMX19_05473 at 171.623 kb on + strand, within MPMX19_05473 at 171.624 kb on - strand, within MPMX19_05473 at 171.624 kb on - strand, within MPMX19_05473 at 171.624 kb on - strand, within MPMX19_05473 at 171.624 kb on - strand, within MPMX19_05473 at 171.624 kb on - strand, within MPMX19_05473 at 171.726 kb on - strand, within MPMX19_05473 at 172.149 kb on + strand, within MPMX19_05474 at 172.150 kb on - strand, within MPMX19_05474 at 172.288 kb on + strand at 172.288 kb on + strand at 172.289 kb on - strand at 172.656 kb on + strand, within MPMX19_05475 at 172.656 kb on + strand, within MPMX19_05475
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 170,566 + MPMX19_05471 0.55 +0.5 170,567 - MPMX19_05471 0.55 -2.0 170,832 + +0.5 170,832 + -0.6 170,832 + -2.6 170,832 + +0.3 170,832 + -0.6 170,832 + -1.2 170,832 + -0.8 170,832 + -1.3 170,832 + +0.1 170,832 + +0.1 170,832 + -1.5 170,832 + -0.6 170,833 - +0.9 170,833 - -1.6 170,833 - -2.0 170,833 - -2.3 170,833 - -0.6 170,833 - -2.0 170,833 - -0.5 170,833 - -0.7 170,833 - -1.0 170,881 + -1.2 170,882 - +0.1 170,882 - -0.8 170,926 + MPMX19_05472 0.18 +0.3 170,926 + MPMX19_05472 0.18 -2.0 170,926 + MPMX19_05472 0.18 -0.5 170,926 + MPMX19_05472 0.18 +0.4 170,926 + MPMX19_05472 0.18 -0.7 170,926 + MPMX19_05472 0.18 -0.7 170,927 - MPMX19_05472 0.18 +0.5 170,927 - MPMX19_05472 0.18 +0.8 170,927 - MPMX19_05472 0.18 -2.0 170,927 - MPMX19_05472 0.18 -0.8 170,927 - MPMX19_05472 0.18 -0.7 170,927 - MPMX19_05472 0.18 +0.3 170,927 - MPMX19_05472 0.18 -0.0 170,995 + MPMX19_05472 0.45 -2.3 170,995 + MPMX19_05472 0.45 -1.2 170,996 - MPMX19_05472 0.45 -0.7 171,052 + MPMX19_05472 0.67 +1.5 171,195 + -0.1 171,196 - -0.6 171,223 - +2.1 171,238 + -1.5 171,238 + -0.3 171,238 + -2.1 171,238 + +0.3 171,239 - -1.7 171,239 - -0.5 171,239 - +0.8 171,299 + -1.4 171,299 + +0.9 171,299 + -0.4 171,299 + -0.2 171,299 + -1.5 171,300 - +0.5 171,300 - -0.7 171,300 - -0.2 171,300 - -0.0 171,300 - +0.1 171,300 - -0.6 171,602 + MPMX19_05473 0.44 -0.6 171,602 + MPMX19_05473 0.44 +0.0 171,603 - MPMX19_05473 0.44 +0.1 171,603 - MPMX19_05473 0.44 -1.5 171,603 - MPMX19_05473 0.44 -0.5 171,623 + MPMX19_05473 0.48 -0.3 171,623 + MPMX19_05473 0.48 -2.0 171,623 + MPMX19_05473 0.48 -0.6 171,623 + MPMX19_05473 0.48 -1.6 171,623 + MPMX19_05473 0.48 -1.3 171,623 + MPMX19_05473 0.48 -1.3 171,624 - MPMX19_05473 0.48 -1.3 171,624 - MPMX19_05473 0.48 -0.9 171,624 - MPMX19_05473 0.48 +0.5 171,624 - MPMX19_05473 0.48 -1.1 171,624 - MPMX19_05473 0.48 +0.5 171,726 - MPMX19_05473 0.68 +0.1 172,149 + MPMX19_05474 0.60 -0.7 172,150 - MPMX19_05474 0.60 +0.4 172,288 + +0.8 172,288 + -0.6 172,289 - +0.9 172,656 + MPMX19_05475 0.51 +0.5 172,656 + MPMX19_05475 0.51 -1.3
Or see this region's nucleotide sequence