Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05465 and MPMX19_05466 are separated by 656 nucleotides
MPMX19_05465: MPMX19_05465 - IS5 family transposase ISAzs10, at 160,301 to 161,377
_05465
MPMX19_05466: MPMX19_05466 - hypothetical protein, at 162,034 to 163,674
_05466
Position (kb) 162
163
164 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 161.502 kb on + strand at 161.502 kb on + strand at 161.502 kb on + strand at 161.502 kb on + strand at 161.526 kb on + strand at 161.526 kb on + strand at 161.539 kb on + strand at 161.539 kb on + strand at 161.575 kb on + strand at 161.576 kb on - strand at 161.576 kb on - strand at 161.622 kb on + strand at 161.681 kb on + strand at 161.681 kb on + strand at 161.681 kb on + strand at 161.681 kb on + strand at 161.682 kb on - strand at 161.682 kb on - strand at 161.682 kb on - strand at 161.733 kb on + strand at 161.733 kb on + strand at 161.733 kb on + strand at 161.734 kb on - strand at 161.734 kb on - strand at 161.750 kb on + strand at 161.751 kb on - strand at 161.751 kb on - strand at 161.751 kb on - strand at 161.768 kb on + strand at 161.768 kb on + strand at 161.768 kb on + strand at 161.768 kb on + strand at 161.768 kb on + strand at 161.768 kb on + strand at 161.768 kb on + strand at 161.769 kb on - strand at 161.769 kb on - strand at 161.769 kb on - strand at 161.769 kb on - strand at 161.769 kb on - strand at 161.769 kb on - strand at 161.769 kb on - strand at 161.769 kb on - strand at 161.769 kb on - strand at 161.786 kb on - strand at 161.786 kb on - strand at 161.848 kb on + strand at 161.848 kb on + strand at 161.848 kb on + strand at 161.848 kb on + strand at 161.848 kb on + strand at 161.848 kb on + strand at 161.849 kb on - strand at 161.849 kb on - strand at 161.849 kb on - strand at 161.849 kb on - strand at 161.849 kb on - strand at 162.009 kb on + strand at 162.009 kb on + strand at 162.010 kb on - strand at 162.010 kb on - strand at 162.015 kb on + strand at 162.015 kb on + strand at 162.016 kb on - strand at 162.016 kb on - strand at 162.036 kb on - strand at 162.036 kb on - strand at 162.036 kb on - strand at 162.067 kb on + strand at 162.151 kb on + strand at 162.321 kb on + strand, within MPMX19_05466 at 162.343 kb on + strand, within MPMX19_05466 at 162.343 kb on + strand, within MPMX19_05466 at 162.425 kb on + strand, within MPMX19_05466 at 162.498 kb on - strand, within MPMX19_05466 at 162.577 kb on + strand, within MPMX19_05466 at 162.578 kb on - strand, within MPMX19_05466 at 162.621 kb on + strand, within MPMX19_05466 at 162.621 kb on + strand, within MPMX19_05466 at 162.754 kb on + strand, within MPMX19_05466 at 162.754 kb on + strand, within MPMX19_05466 at 162.756 kb on + strand, within MPMX19_05466 at 162.756 kb on + strand, within MPMX19_05466 at 162.757 kb on - strand, within MPMX19_05466 at 162.769 kb on + strand, within MPMX19_05466 at 162.770 kb on - strand, within MPMX19_05466 at 162.772 kb on - strand, within MPMX19_05466 at 162.779 kb on + strand, within MPMX19_05466 at 162.780 kb on - strand, within MPMX19_05466 at 162.932 kb on - strand, within MPMX19_05466 at 162.932 kb on - strand, within MPMX19_05466 at 162.952 kb on - strand, within MPMX19_05466 at 163.010 kb on + strand, within MPMX19_05466 at 163.010 kb on + strand, within MPMX19_05466 at 163.011 kb on - strand, within MPMX19_05466 at 163.068 kb on + strand, within MPMX19_05466 at 163.068 kb on + strand, within MPMX19_05466 at 163.118 kb on + strand, within MPMX19_05466 at 163.118 kb on + strand, within MPMX19_05466 at 163.119 kb on - strand, within MPMX19_05466 at 163.123 kb on + strand, within MPMX19_05466 at 163.123 kb on + strand, within MPMX19_05466 at 163.124 kb on - strand, within MPMX19_05466 at 163.233 kb on + strand, within MPMX19_05466 at 163.233 kb on + strand, within MPMX19_05466 at 163.233 kb on + strand, within MPMX19_05466 at 163.233 kb on + strand, within MPMX19_05466 at 163.291 kb on - strand, within MPMX19_05466 at 163.291 kb on - strand, within MPMX19_05466 at 163.291 kb on - strand, within MPMX19_05466 at 163.320 kb on + strand, within MPMX19_05466 at 163.320 kb on + strand, within MPMX19_05466 at 163.321 kb on - strand, within MPMX19_05466 at 163.330 kb on - strand, within MPMX19_05466 at 163.453 kb on + strand, within MPMX19_05466 at 163.453 kb on + strand, within MPMX19_05466 at 163.453 kb on + strand, within MPMX19_05466 at 163.454 kb on - strand, within MPMX19_05466 at 163.454 kb on - strand, within MPMX19_05466 at 163.462 kb on + strand, within MPMX19_05466 at 163.462 kb on + strand, within MPMX19_05466 at 163.462 kb on + strand, within MPMX19_05466 at 163.463 kb on - strand, within MPMX19_05466 at 163.463 kb on - strand, within MPMX19_05466 at 163.574 kb on + strand at 163.574 kb on + strand at 163.577 kb on + strand at 163.577 kb on + strand at 163.577 kb on + strand at 163.577 kb on + strand at 163.577 kb on + strand at 163.577 kb on + strand at 163.577 kb on + strand at 163.577 kb on + strand at 163.577 kb on + strand at 163.577 kb on + strand at 163.577 kb on + strand at 163.577 kb on + strand at 163.577 kb on + strand at 163.577 kb on + strand at 163.577 kb on + strand at 163.577 kb on + strand at 163.577 kb on + strand at 163.577 kb on + strand at 163.577 kb on + strand at 163.577 kb on + strand at 163.577 kb on + strand at 163.578 kb on - strand at 163.578 kb on - strand at 163.578 kb on - strand at 163.578 kb on - strand at 163.578 kb on - strand at 163.578 kb on - strand at 163.578 kb on - strand at 163.578 kb on - strand at 163.578 kb on - strand at 163.578 kb on - strand at 163.578 kb on - strand at 163.578 kb on - strand at 163.609 kb on - strand at 163.658 kb on - strand at 163.701 kb on - strand at 163.701 kb on - strand at 163.701 kb on - strand at 163.710 kb on - strand at 163.710 kb on - strand at 163.710 kb on - strand at 164.555 kb on + strand at 164.555 kb on + strand at 164.555 kb on + strand at 164.555 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 161,502 + -1.0 161,502 + +1.8 161,502 + +0.4 161,502 + +0.6 161,526 + -0.7 161,526 + +0.1 161,539 + +0.1 161,539 + -0.9 161,575 + -0.9 161,576 - +0.1 161,576 - -0.7 161,622 + -1.0 161,681 + -1.1 161,681 + +1.1 161,681 + +1.9 161,681 + +1.0 161,682 - -0.3 161,682 - +0.9 161,682 - +0.9 161,733 + +0.1 161,733 + -3.3 161,733 + -0.9 161,734 - +0.2 161,734 - -0.1 161,750 + +0.5 161,751 - -0.5 161,751 - -1.2 161,751 - -0.1 161,768 + -0.7 161,768 + -0.2 161,768 + -2.3 161,768 + +0.1 161,768 + -0.7 161,768 + -1.3 161,768 + -0.8 161,769 - -0.0 161,769 - -0.6 161,769 - -0.9 161,769 - -0.1 161,769 - +0.0 161,769 - -1.2 161,769 - -0.4 161,769 - +0.1 161,769 - -1.0 161,786 - -0.4 161,786 - -1.2 161,848 + +0.7 161,848 + -0.7 161,848 + -1.4 161,848 + +0.1 161,848 + -0.7 161,848 + +2.1 161,849 - -1.2 161,849 - -0.0 161,849 - -2.2 161,849 - -0.7 161,849 - -0.8 162,009 + -0.3 162,009 + -0.7 162,010 - -1.3 162,010 - -0.8 162,015 + -0.8 162,015 + -0.0 162,016 - +0.1 162,016 - -0.0 162,036 - -0.4 162,036 - -0.5 162,036 - +0.4 162,067 + +2.1 162,151 + -1.7 162,321 + MPMX19_05466 0.17 +0.1 162,343 + MPMX19_05466 0.19 +2.1 162,343 + MPMX19_05466 0.19 -0.0 162,425 + MPMX19_05466 0.24 -0.5 162,498 - MPMX19_05466 0.28 -0.9 162,577 + MPMX19_05466 0.33 +2.1 162,578 - MPMX19_05466 0.33 -1.6 162,621 + MPMX19_05466 0.36 -0.6 162,621 + MPMX19_05466 0.36 -0.7 162,754 + MPMX19_05466 0.44 -1.5 162,754 + MPMX19_05466 0.44 -1.7 162,756 + MPMX19_05466 0.44 -0.7 162,756 + MPMX19_05466 0.44 -2.0 162,757 - MPMX19_05466 0.44 +0.5 162,769 + MPMX19_05466 0.45 -0.2 162,770 - MPMX19_05466 0.45 -0.2 162,772 - MPMX19_05466 0.45 -0.9 162,779 + MPMX19_05466 0.45 +0.5 162,780 - MPMX19_05466 0.45 -2.0 162,932 - MPMX19_05466 0.55 -0.7 162,932 - MPMX19_05466 0.55 -0.0 162,952 - MPMX19_05466 0.56 -0.7 163,010 + MPMX19_05466 0.59 -1.0 163,010 + MPMX19_05466 0.59 -1.9 163,011 - MPMX19_05466 0.60 -0.1 163,068 + MPMX19_05466 0.63 -0.7 163,068 + MPMX19_05466 0.63 -0.2 163,118 + MPMX19_05466 0.66 -0.5 163,118 + MPMX19_05466 0.66 -0.9 163,119 - MPMX19_05466 0.66 +0.3 163,123 + MPMX19_05466 0.66 -1.5 163,123 + MPMX19_05466 0.66 -1.6 163,124 - MPMX19_05466 0.66 -0.2 163,233 + MPMX19_05466 0.73 -0.9 163,233 + MPMX19_05466 0.73 -3.1 163,233 + MPMX19_05466 0.73 -1.9 163,233 + MPMX19_05466 0.73 +0.3 163,291 - MPMX19_05466 0.77 +0.8 163,291 - MPMX19_05466 0.77 -0.7 163,291 - MPMX19_05466 0.77 -1.3 163,320 + MPMX19_05466 0.78 -1.4 163,320 + MPMX19_05466 0.78 +0.1 163,321 - MPMX19_05466 0.78 -0.1 163,330 - MPMX19_05466 0.79 -0.0 163,453 + MPMX19_05466 0.86 -1.5 163,453 + MPMX19_05466 0.86 +0.3 163,453 + MPMX19_05466 0.86 +1.1 163,454 - MPMX19_05466 0.87 -0.6 163,454 - MPMX19_05466 0.87 -0.7 163,462 + MPMX19_05466 0.87 +0.3 163,462 + MPMX19_05466 0.87 +1.1 163,462 + MPMX19_05466 0.87 -1.5 163,463 - MPMX19_05466 0.87 -0.2 163,463 - MPMX19_05466 0.87 -0.7 163,574 + -1.6 163,574 + -1.0 163,577 + -1.3 163,577 + -1.6 163,577 + -0.3 163,577 + -0.7 163,577 + -1.1 163,577 + -0.9 163,577 + -0.7 163,577 + -0.2 163,577 + +0.1 163,577 + -0.6 163,577 + +0.4 163,577 + -2.2 163,577 + -0.2 163,577 + -0.6 163,577 + -0.8 163,577 + -1.5 163,577 + -0.6 163,577 + +0.7 163,577 + -1.0 163,577 + -0.2 163,577 + -0.5 163,578 - -0.9 163,578 - -0.7 163,578 - +0.9 163,578 - -1.1 163,578 - -1.2 163,578 - -0.2 163,578 - -1.3 163,578 - +1.1 163,578 - +0.1 163,578 - -0.2 163,578 - -0.2 163,578 - +0.3 163,609 - +0.1 163,658 - -1.1 163,701 - -0.5 163,701 - -1.0 163,701 - -0.1 163,710 - -2.0 163,710 - -0.6 163,710 - -0.5 164,555 + +0.1 164,555 + -0.3 164,555 + +0.3 164,555 + +0.3
Or see this region's nucleotide sequence