Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05445

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05444 and MPMX19_05445 are separated by 55 nucleotidesMPMX19_05445 and MPMX19_05446 are separated by 68 nucleotidesMPMX19_05446 and MPMX19_05447 are separated by 46 nucleotidesMPMX19_05447 and MPMX19_05448 are separated by 160 nucleotides MPMX19_05444: MPMX19_05444 - Low specificity L-threonine aldolase, at 132,864 to 133,886 _05444 MPMX19_05445: MPMX19_05445 - tRNA-Glu, at 133,942 to 134,017 _05445 MPMX19_05446: MPMX19_05446 - tRNA-Glu, at 134,086 to 134,161 _05446 MPMX19_05447: MPMX19_05447 - tRNA-Glu, at 134,208 to 134,283 _05447 MPMX19_05448: MPMX19_05448 - DNA-invertase hin, at 134,444 to 135,007 _05448 Position (kb) 133 134 135Strain fitness (log2 ratio) -2 -1 0 1 2at 132.954 kb on + strandat 132.954 kb on + strandat 132.954 kb on + strandat 132.955 kb on - strandat 133.086 kb on + strand, within MPMX19_05444at 133.086 kb on + strand, within MPMX19_05444at 133.087 kb on - strand, within MPMX19_05444at 133.087 kb on - strand, within MPMX19_05444at 133.311 kb on + strand, within MPMX19_05444at 133.311 kb on + strand, within MPMX19_05444at 133.311 kb on + strand, within MPMX19_05444at 133.311 kb on + strand, within MPMX19_05444at 133.311 kb on + strand, within MPMX19_05444at 133.311 kb on + strand, within MPMX19_05444at 133.311 kb on + strand, within MPMX19_05444at 133.311 kb on + strand, within MPMX19_05444at 133.311 kb on + strand, within MPMX19_05444at 133.311 kb on + strand, within MPMX19_05444at 133.311 kb on + strand, within MPMX19_05444at 133.311 kb on + strand, within MPMX19_05444at 133.311 kb on + strand, within MPMX19_05444at 133.312 kb on - strand, within MPMX19_05444at 133.312 kb on - strand, within MPMX19_05444at 133.312 kb on - strand, within MPMX19_05444at 133.312 kb on - strand, within MPMX19_05444at 133.312 kb on - strand, within MPMX19_05444at 133.312 kb on - strand, within MPMX19_05444at 133.312 kb on - strand, within MPMX19_05444at 133.312 kb on - strand, within MPMX19_05444at 133.312 kb on - strand, within MPMX19_05444at 133.312 kb on - strand, within MPMX19_05444at 133.312 kb on - strand, within MPMX19_05444at 133.312 kb on - strand, within MPMX19_05444at 133.312 kb on - strand, within MPMX19_05444at 133.312 kb on - strand, within MPMX19_05444at 133.313 kb on + strand, within MPMX19_05444at 133.314 kb on - strand, within MPMX19_05444at 133.314 kb on - strand, within MPMX19_05444at 133.373 kb on + strand, within MPMX19_05444at 133.373 kb on + strand, within MPMX19_05444at 133.373 kb on + strand, within MPMX19_05444at 133.373 kb on + strand, within MPMX19_05444at 133.373 kb on + strand, within MPMX19_05444at 133.373 kb on + strand, within MPMX19_05444at 133.373 kb on + strand, within MPMX19_05444at 133.373 kb on + strand, within MPMX19_05444at 133.373 kb on + strand, within MPMX19_05444at 133.373 kb on + strand, within MPMX19_05444at 133.373 kb on + strand, within MPMX19_05444at 133.374 kb on - strand, within MPMX19_05444at 133.374 kb on - strand, within MPMX19_05444at 133.374 kb on - strand, within MPMX19_05444at 133.374 kb on - strand, within MPMX19_05444at 133.374 kb on - strand, within MPMX19_05444at 133.374 kb on - strand, within MPMX19_05444at 133.374 kb on - strand, within MPMX19_05444at 133.374 kb on - strand, within MPMX19_05444at 133.374 kb on - strand, within MPMX19_05444at 133.755 kb on + strand, within MPMX19_05444at 133.755 kb on + strand, within MPMX19_05444at 133.755 kb on + strand, within MPMX19_05444at 133.756 kb on - strand, within MPMX19_05444at 133.756 kb on - strand, within MPMX19_05444at 133.791 kb on + strandat 133.791 kb on + strandat 133.792 kb on - strandat 133.792 kb on - strandat 133.792 kb on - strandat 133.792 kb on - strandat 133.792 kb on - strandat 133.792 kb on - strandat 133.792 kb on - strandat 133.792 kb on - strandat 133.792 kb on - strandat 133.792 kb on - strandat 133.792 kb on - strandat 133.868 kb on + strandat 133.885 kb on - strandat 133.954 kb on + strand, within MPMX19_05445at 133.954 kb on + strand, within MPMX19_05445at 133.954 kb on + strand, within MPMX19_05445at 133.962 kb on + strand, within MPMX19_05445at 133.962 kb on + strand, within MPMX19_05445at 133.962 kb on + strand, within MPMX19_05445at 134.099 kb on - strand, within MPMX19_05446at 134.202 kb on + strandat 134.202 kb on + strandat 134.202 kb on + strandat 134.202 kb on + strandat 134.202 kb on + strandat 134.202 kb on + strandat 134.202 kb on + strandat 134.203 kb on - strandat 134.303 kb on + strandat 134.304 kb on - strandat 134.315 kb on - strandat 134.338 kb on + strandat 134.352 kb on - strandat 134.359 kb on + strandat 134.360 kb on - strandat 134.363 kb on + strandat 134.374 kb on + strandat 134.385 kb on + strandat 134.385 kb on + strandat 134.386 kb on - strandat 134.446 kb on - strandat 134.446 kb on - strandat 134.473 kb on + strandat 134.473 kb on + strandat 134.484 kb on + strandat 134.485 kb on - strandat 134.512 kb on + strand, within MPMX19_05448at 134.512 kb on + strand, within MPMX19_05448at 134.512 kb on + strand, within MPMX19_05448at 134.595 kb on + strand, within MPMX19_05448at 134.595 kb on + strand, within MPMX19_05448at 134.595 kb on + strand, within MPMX19_05448at 134.698 kb on + strand, within MPMX19_05448at 134.716 kb on + strand, within MPMX19_05448at 134.717 kb on - strand, within MPMX19_05448at 134.762 kb on + strand, within MPMX19_05448at 134.762 kb on + strand, within MPMX19_05448at 134.762 kb on + strand, within MPMX19_05448at 134.762 kb on + strand, within MPMX19_05448at 134.763 kb on - strand, within MPMX19_05448at 134.763 kb on - strand, within MPMX19_05448at 134.763 kb on - strand, within MPMX19_05448at 134.992 kb on - strandat 134.992 kb on - strandat 134.997 kb on + strandat 134.997 kb on + strandat 134.997 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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132,954 + -1.8
132,954 + +0.5
132,954 + +1.9
132,955 - -0.9
133,086 + MPMX19_05444 0.22 -0.8
133,086 + MPMX19_05444 0.22 -0.5
133,087 - MPMX19_05444 0.22 -1.7
133,087 - MPMX19_05444 0.22 -1.0
133,311 + MPMX19_05444 0.44 -0.1
133,311 + MPMX19_05444 0.44 +0.3
133,311 + MPMX19_05444 0.44 -1.0
133,311 + MPMX19_05444 0.44 -0.3
133,311 + MPMX19_05444 0.44 -0.3
133,311 + MPMX19_05444 0.44 -1.0
133,311 + MPMX19_05444 0.44 -2.0
133,311 + MPMX19_05444 0.44 +0.3
133,311 + MPMX19_05444 0.44 +0.8
133,311 + MPMX19_05444 0.44 -0.5
133,311 + MPMX19_05444 0.44 -0.5
133,311 + MPMX19_05444 0.44 +0.8
133,311 + MPMX19_05444 0.44 +0.0
133,312 - MPMX19_05444 0.44 -1.0
133,312 - MPMX19_05444 0.44 -0.5
133,312 - MPMX19_05444 0.44 -1.2
133,312 - MPMX19_05444 0.44 -0.9
133,312 - MPMX19_05444 0.44 -0.9
133,312 - MPMX19_05444 0.44 -0.6
133,312 - MPMX19_05444 0.44 -1.0
133,312 - MPMX19_05444 0.44 -1.0
133,312 - MPMX19_05444 0.44 -1.0
133,312 - MPMX19_05444 0.44 -2.0
133,312 - MPMX19_05444 0.44 -0.1
133,312 - MPMX19_05444 0.44 +0.3
133,312 - MPMX19_05444 0.44 -1.3
133,312 - MPMX19_05444 0.44 +0.5
133,313 + MPMX19_05444 0.44 -0.2
133,314 - MPMX19_05444 0.44 -0.3
133,314 - MPMX19_05444 0.44 +0.1
133,373 + MPMX19_05444 0.50 -0.1
133,373 + MPMX19_05444 0.50 -0.3
133,373 + MPMX19_05444 0.50 -1.2
133,373 + MPMX19_05444 0.50 -0.0
133,373 + MPMX19_05444 0.50 -1.5
133,373 + MPMX19_05444 0.50 -0.5
133,373 + MPMX19_05444 0.50 -0.3
133,373 + MPMX19_05444 0.50 -0.5
133,373 + MPMX19_05444 0.50 -1.2
133,373 + MPMX19_05444 0.50 -1.3
133,373 + MPMX19_05444 0.50 +0.5
133,374 - MPMX19_05444 0.50 -0.9
133,374 - MPMX19_05444 0.50 +0.8
133,374 - MPMX19_05444 0.50 -0.2
133,374 - MPMX19_05444 0.50 -2.0
133,374 - MPMX19_05444 0.50 -0.3
133,374 - MPMX19_05444 0.50 -0.3
133,374 - MPMX19_05444 0.50 -0.8
133,374 - MPMX19_05444 0.50 -0.2
133,374 - MPMX19_05444 0.50 +0.5
133,755 + MPMX19_05444 0.87 +0.0
133,755 + MPMX19_05444 0.87 +0.3
133,755 + MPMX19_05444 0.87 +0.8
133,756 - MPMX19_05444 0.87 +0.0
133,756 - MPMX19_05444 0.87 -1.1
133,791 + +0.3
133,791 + -1.0
133,792 - -2.2
133,792 - -1.2
133,792 - +1.5
133,792 - -2.3
133,792 - -2.3
133,792 - +0.3
133,792 - -0.2
133,792 - -0.7
133,792 - +2.1
133,792 - -1.2
133,792 - +0.4
133,868 + -1.3
133,885 - -1.1
133,954 + MPMX19_05445 0.16 -1.0
133,954 + MPMX19_05445 0.16 -0.7
133,954 + MPMX19_05445 0.16 -1.2
133,962 + MPMX19_05445 0.26 -1.3
133,962 + MPMX19_05445 0.26 -0.9
133,962 + MPMX19_05445 0.26 -0.9
134,099 - MPMX19_05446 0.17 +0.7
134,202 + -1.3
134,202 + -1.4
134,202 + -0.4
134,202 + -1.9
134,202 + -0.5
134,202 + -0.3
134,202 + -1.1
134,203 - +1.3
134,303 + -0.2
134,304 - -0.6
134,315 - -0.0
134,338 + +0.1
134,352 - -1.8
134,359 + +0.8
134,360 - -1.0
134,363 + -0.5
134,374 + -1.2
134,385 + -0.2
134,385 + -0.6
134,386 - -1.2
134,446 - -0.3
134,446 - -0.7
134,473 + -1.7
134,473 + -0.9
134,484 + -2.2
134,485 - -0.5
134,512 + MPMX19_05448 0.12 -1.0
134,512 + MPMX19_05448 0.12 +0.3
134,512 + MPMX19_05448 0.12 +1.4
134,595 + MPMX19_05448 0.27 -0.9
134,595 + MPMX19_05448 0.27 +0.5
134,595 + MPMX19_05448 0.27 -0.9
134,698 + MPMX19_05448 0.45 -1.8
134,716 + MPMX19_05448 0.48 -0.5
134,717 - MPMX19_05448 0.48 +0.5
134,762 + MPMX19_05448 0.56 -0.2
134,762 + MPMX19_05448 0.56 -0.1
134,762 + MPMX19_05448 0.56 -2.2
134,762 + MPMX19_05448 0.56 -0.9
134,763 - MPMX19_05448 0.57 +1.1
134,763 - MPMX19_05448 0.57 -1.0
134,763 - MPMX19_05448 0.57 -0.9
134,992 - +0.1
134,992 - +1.5
134,997 + +0.5
134,997 + -1.0
134,997 + -1.1

Or see this region's nucleotide sequence