Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05441 and MPMX19_05442 are separated by 161 nucleotides MPMX19_05442 and MPMX19_05443 are separated by 52 nucleotides MPMX19_05443 and MPMX19_05444 are separated by 27 nucleotides
MPMX19_05441: MPMX19_05441 - RNA polymerase sigma factor RpoH, at 130,356 to 131,246
_05441
MPMX19_05442: MPMX19_05442 - Ribosomal large subunit pseudouridine synthase D, at 131,408 to 132,466
_05442
MPMX19_05443: MPMX19_05443 - hypothetical protein, at 132,519 to 132,836
_05443
MPMX19_05444: MPMX19_05444 - Low specificity L-threonine aldolase, at 132,864 to 133,886
_05444
Position (kb) 131
132
133 Strain fitness (log2 ratio) -2
-1
0
1
2 at 131.379 kb on - strand at 131.379 kb on - strand at 131.379 kb on - strand at 131.402 kb on - strand at 131.410 kb on - strand at 131.432 kb on + strand at 131.432 kb on + strand at 131.432 kb on + strand at 131.432 kb on + strand at 131.433 kb on - strand at 131.433 kb on - strand at 131.433 kb on - strand at 131.433 kb on - strand at 131.433 kb on - strand at 131.433 kb on - strand at 131.433 kb on - strand at 131.433 kb on - strand at 131.433 kb on - strand at 131.433 kb on - strand at 131.433 kb on - strand at 131.443 kb on + strand at 131.444 kb on - strand at 131.617 kb on - strand, within MPMX19_05442 at 131.743 kb on - strand, within MPMX19_05442 at 131.845 kb on + strand, within MPMX19_05442 at 131.871 kb on + strand, within MPMX19_05442 at 131.871 kb on + strand, within MPMX19_05442 at 131.871 kb on + strand, within MPMX19_05442 at 131.871 kb on + strand, within MPMX19_05442 at 131.871 kb on + strand, within MPMX19_05442 at 131.872 kb on - strand, within MPMX19_05442 at 132.132 kb on + strand, within MPMX19_05442 at 132.132 kb on + strand, within MPMX19_05442 at 132.132 kb on + strand, within MPMX19_05442 at 132.132 kb on + strand, within MPMX19_05442 at 132.133 kb on - strand, within MPMX19_05442 at 132.133 kb on - strand, within MPMX19_05442 at 132.133 kb on - strand, within MPMX19_05442 at 132.133 kb on - strand, within MPMX19_05442 at 132.133 kb on - strand, within MPMX19_05442 at 132.369 kb on + strand at 132.370 kb on - strand at 132.370 kb on - strand at 132.455 kb on - strand at 132.597 kb on + strand, within MPMX19_05443 at 132.597 kb on + strand, within MPMX19_05443 at 132.597 kb on + strand, within MPMX19_05443 at 132.597 kb on + strand, within MPMX19_05443 at 132.597 kb on + strand, within MPMX19_05443 at 132.597 kb on + strand, within MPMX19_05443 at 132.597 kb on + strand, within MPMX19_05443 at 132.597 kb on + strand, within MPMX19_05443 at 132.597 kb on + strand, within MPMX19_05443 at 132.597 kb on + strand, within MPMX19_05443 at 132.598 kb on - strand, within MPMX19_05443 at 132.598 kb on - strand, within MPMX19_05443 at 132.598 kb on - strand, within MPMX19_05443 at 132.598 kb on - strand, within MPMX19_05443 at 132.598 kb on - strand, within MPMX19_05443 at 132.598 kb on - strand, within MPMX19_05443 at 132.598 kb on - strand, within MPMX19_05443 at 132.598 kb on - strand, within MPMX19_05443 at 132.598 kb on - strand, within MPMX19_05443 at 132.598 kb on - strand, within MPMX19_05443 at 132.598 kb on - strand, within MPMX19_05443 at 132.780 kb on + strand, within MPMX19_05443 at 132.781 kb on - strand, within MPMX19_05443 at 132.781 kb on - strand, within MPMX19_05443 at 132.781 kb on - strand, within MPMX19_05443 at 132.781 kb on - strand, within MPMX19_05443 at 132.954 kb on + strand at 132.954 kb on + strand at 132.954 kb on + strand at 132.955 kb on - strand at 133.086 kb on + strand, within MPMX19_05444 at 133.086 kb on + strand, within MPMX19_05444 at 133.087 kb on - strand, within MPMX19_05444 at 133.087 kb on - strand, within MPMX19_05444 at 133.311 kb on + strand, within MPMX19_05444 at 133.311 kb on + strand, within MPMX19_05444 at 133.311 kb on + strand, within MPMX19_05444 at 133.311 kb on + strand, within MPMX19_05444 at 133.311 kb on + strand, within MPMX19_05444 at 133.311 kb on + strand, within MPMX19_05444 at 133.311 kb on + strand, within MPMX19_05444 at 133.311 kb on + strand, within MPMX19_05444 at 133.311 kb on + strand, within MPMX19_05444 at 133.311 kb on + strand, within MPMX19_05444 at 133.311 kb on + strand, within MPMX19_05444 at 133.311 kb on + strand, within MPMX19_05444 at 133.311 kb on + strand, within MPMX19_05444 at 133.312 kb on - strand, within MPMX19_05444 at 133.312 kb on - strand, within MPMX19_05444 at 133.312 kb on - strand, within MPMX19_05444 at 133.312 kb on - strand, within MPMX19_05444 at 133.312 kb on - strand, within MPMX19_05444 at 133.312 kb on - strand, within MPMX19_05444 at 133.312 kb on - strand, within MPMX19_05444 at 133.312 kb on - strand, within MPMX19_05444 at 133.312 kb on - strand, within MPMX19_05444 at 133.312 kb on - strand, within MPMX19_05444 at 133.312 kb on - strand, within MPMX19_05444 at 133.312 kb on - strand, within MPMX19_05444 at 133.312 kb on - strand, within MPMX19_05444 at 133.312 kb on - strand, within MPMX19_05444 at 133.313 kb on + strand, within MPMX19_05444 at 133.314 kb on - strand, within MPMX19_05444 at 133.314 kb on - strand, within MPMX19_05444 at 133.373 kb on + strand, within MPMX19_05444 at 133.373 kb on + strand, within MPMX19_05444 at 133.373 kb on + strand, within MPMX19_05444 at 133.373 kb on + strand, within MPMX19_05444 at 133.373 kb on + strand, within MPMX19_05444 at 133.373 kb on + strand, within MPMX19_05444 at 133.373 kb on + strand, within MPMX19_05444 at 133.373 kb on + strand, within MPMX19_05444 at 133.373 kb on + strand, within MPMX19_05444 at 133.373 kb on + strand, within MPMX19_05444 at 133.373 kb on + strand, within MPMX19_05444 at 133.374 kb on - strand, within MPMX19_05444 at 133.374 kb on - strand, within MPMX19_05444 at 133.374 kb on - strand, within MPMX19_05444 at 133.374 kb on - strand, within MPMX19_05444 at 133.374 kb on - strand, within MPMX19_05444 at 133.374 kb on - strand, within MPMX19_05444 at 133.374 kb on - strand, within MPMX19_05444 at 133.374 kb on - strand, within MPMX19_05444 at 133.374 kb on - strand, within MPMX19_05444
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 131,379 - -1.3 131,379 - -0.3 131,379 - +0.1 131,402 - -1.7 131,410 - -0.4 131,432 + -1.4 131,432 + +0.1 131,432 + +0.5 131,432 + -0.5 131,433 - +0.1 131,433 - -0.8 131,433 - -1.0 131,433 - -0.8 131,433 - -1.5 131,433 - -0.8 131,433 - -0.7 131,433 - -1.5 131,433 - +0.7 131,433 - -2.2 131,433 - -1.4 131,443 + -1.2 131,444 - +1.1 131,617 - MPMX19_05442 0.20 +0.8 131,743 - MPMX19_05442 0.32 +1.7 131,845 + MPMX19_05442 0.41 -0.5 131,871 + MPMX19_05442 0.44 -0.7 131,871 + MPMX19_05442 0.44 -0.5 131,871 + MPMX19_05442 0.44 -1.0 131,871 + MPMX19_05442 0.44 -0.5 131,871 + MPMX19_05442 0.44 +0.3 131,872 - MPMX19_05442 0.44 +1.5 132,132 + MPMX19_05442 0.68 +2.7 132,132 + MPMX19_05442 0.68 -0.2 132,132 + MPMX19_05442 0.68 -1.5 132,132 + MPMX19_05442 0.68 -0.2 132,133 - MPMX19_05442 0.68 +1.1 132,133 - MPMX19_05442 0.68 +2.1 132,133 - MPMX19_05442 0.68 -1.2 132,133 - MPMX19_05442 0.68 -0.9 132,133 - MPMX19_05442 0.68 -0.7 132,369 + -1.0 132,370 - +0.8 132,370 - +0.3 132,455 - -1.1 132,597 + MPMX19_05443 0.25 +0.9 132,597 + MPMX19_05443 0.25 -1.2 132,597 + MPMX19_05443 0.25 -0.1 132,597 + MPMX19_05443 0.25 -0.0 132,597 + MPMX19_05443 0.25 +0.7 132,597 + MPMX19_05443 0.25 -1.5 132,597 + MPMX19_05443 0.25 -0.2 132,597 + MPMX19_05443 0.25 +0.5 132,597 + MPMX19_05443 0.25 -1.0 132,597 + MPMX19_05443 0.25 -0.9 132,598 - MPMX19_05443 0.25 +0.5 132,598 - MPMX19_05443 0.25 -0.9 132,598 - MPMX19_05443 0.25 -0.2 132,598 - MPMX19_05443 0.25 -0.2 132,598 - MPMX19_05443 0.25 -1.3 132,598 - MPMX19_05443 0.25 -1.0 132,598 - MPMX19_05443 0.25 -1.8 132,598 - MPMX19_05443 0.25 -1.4 132,598 - MPMX19_05443 0.25 -1.6 132,598 - MPMX19_05443 0.25 -0.4 132,598 - MPMX19_05443 0.25 -1.3 132,780 + MPMX19_05443 0.82 -0.5 132,781 - MPMX19_05443 0.82 -0.5 132,781 - MPMX19_05443 0.82 -1.0 132,781 - MPMX19_05443 0.82 -0.3 132,781 - MPMX19_05443 0.82 +0.1 132,954 + -1.8 132,954 + +0.5 132,954 + +1.9 132,955 - -0.9 133,086 + MPMX19_05444 0.22 -0.8 133,086 + MPMX19_05444 0.22 -0.5 133,087 - MPMX19_05444 0.22 -1.7 133,087 - MPMX19_05444 0.22 -1.0 133,311 + MPMX19_05444 0.44 -0.1 133,311 + MPMX19_05444 0.44 +0.3 133,311 + MPMX19_05444 0.44 -1.0 133,311 + MPMX19_05444 0.44 -0.3 133,311 + MPMX19_05444 0.44 -0.3 133,311 + MPMX19_05444 0.44 -1.0 133,311 + MPMX19_05444 0.44 -2.0 133,311 + MPMX19_05444 0.44 +0.3 133,311 + MPMX19_05444 0.44 +0.8 133,311 + MPMX19_05444 0.44 -0.5 133,311 + MPMX19_05444 0.44 -0.5 133,311 + MPMX19_05444 0.44 +0.8 133,311 + MPMX19_05444 0.44 +0.0 133,312 - MPMX19_05444 0.44 -1.0 133,312 - MPMX19_05444 0.44 -0.5 133,312 - MPMX19_05444 0.44 -1.2 133,312 - MPMX19_05444 0.44 -0.9 133,312 - MPMX19_05444 0.44 -0.9 133,312 - MPMX19_05444 0.44 -0.6 133,312 - MPMX19_05444 0.44 -1.0 133,312 - MPMX19_05444 0.44 -1.0 133,312 - MPMX19_05444 0.44 -1.0 133,312 - MPMX19_05444 0.44 -2.0 133,312 - MPMX19_05444 0.44 -0.1 133,312 - MPMX19_05444 0.44 +0.3 133,312 - MPMX19_05444 0.44 -1.3 133,312 - MPMX19_05444 0.44 +0.5 133,313 + MPMX19_05444 0.44 -0.2 133,314 - MPMX19_05444 0.44 -0.3 133,314 - MPMX19_05444 0.44 +0.1 133,373 + MPMX19_05444 0.50 -0.1 133,373 + MPMX19_05444 0.50 -0.3 133,373 + MPMX19_05444 0.50 -1.2 133,373 + MPMX19_05444 0.50 -0.0 133,373 + MPMX19_05444 0.50 -1.5 133,373 + MPMX19_05444 0.50 -0.5 133,373 + MPMX19_05444 0.50 -0.3 133,373 + MPMX19_05444 0.50 -0.5 133,373 + MPMX19_05444 0.50 -1.2 133,373 + MPMX19_05444 0.50 -1.3 133,373 + MPMX19_05444 0.50 +0.5 133,374 - MPMX19_05444 0.50 -0.9 133,374 - MPMX19_05444 0.50 +0.8 133,374 - MPMX19_05444 0.50 -0.2 133,374 - MPMX19_05444 0.50 -2.0 133,374 - MPMX19_05444 0.50 -0.3 133,374 - MPMX19_05444 0.50 -0.3 133,374 - MPMX19_05444 0.50 -0.8 133,374 - MPMX19_05444 0.50 -0.2 133,374 - MPMX19_05444 0.50 +0.5
Or see this region's nucleotide sequence