Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05412 and MPMX19_05413 are separated by 112 nucleotides MPMX19_05413 and MPMX19_05414 are separated by 139 nucleotides MPMX19_05414 and MPMX19_05415 are separated by 142 nucleotides
MPMX19_05412: MPMX19_05412 - Glutathione import ATP-binding protein GsiA, at 94,299 to 96,047
_05412
MPMX19_05413: MPMX19_05413 - hypothetical protein, at 96,160 to 99,303
_05413
MPMX19_05414: MPMX19_05414 - hypothetical protein, at 99,443 to 99,979
_05414
MPMX19_05415: MPMX19_05415 - Homogentisate 1,2-dioxygenase, at 100,122 to 101,426
_05415
Position (kb) 96
97
98
99
100 Strain fitness (log2 ratio) -2
-1
0
1
2 at 95.191 kb on + strand, within MPMX19_05412 at 95.191 kb on + strand, within MPMX19_05412 at 95.191 kb on + strand, within MPMX19_05412 at 95.191 kb on + strand, within MPMX19_05412 at 95.191 kb on + strand, within MPMX19_05412 at 95.191 kb on + strand, within MPMX19_05412 at 95.191 kb on + strand, within MPMX19_05412 at 95.191 kb on + strand, within MPMX19_05412 at 95.192 kb on - strand, within MPMX19_05412 at 95.192 kb on - strand, within MPMX19_05412 at 95.192 kb on - strand, within MPMX19_05412 at 95.192 kb on - strand, within MPMX19_05412 at 95.192 kb on - strand, within MPMX19_05412 at 95.192 kb on - strand, within MPMX19_05412 at 95.192 kb on - strand, within MPMX19_05412 at 95.192 kb on - strand, within MPMX19_05412 at 95.192 kb on - strand, within MPMX19_05412 at 95.192 kb on - strand, within MPMX19_05412 at 95.192 kb on - strand, within MPMX19_05412 at 95.192 kb on - strand, within MPMX19_05412 at 95.192 kb on - strand, within MPMX19_05412 at 95.192 kb on - strand, within MPMX19_05412 at 95.192 kb on - strand, within MPMX19_05412 at 95.192 kb on - strand, within MPMX19_05412 at 95.302 kb on + strand, within MPMX19_05412 at 95.302 kb on + strand, within MPMX19_05412 at 95.303 kb on - strand, within MPMX19_05412 at 95.303 kb on - strand, within MPMX19_05412 at 95.303 kb on - strand, within MPMX19_05412 at 95.303 kb on - strand, within MPMX19_05412 at 95.599 kb on + strand, within MPMX19_05412 at 95.600 kb on - strand, within MPMX19_05412 at 95.600 kb on - strand, within MPMX19_05412 at 95.600 kb on - strand, within MPMX19_05412 at 95.600 kb on - strand, within MPMX19_05412 at 95.600 kb on - strand, within MPMX19_05412 at 96.443 kb on + strand at 96.443 kb on + strand at 96.443 kb on + strand at 96.443 kb on + strand at 96.443 kb on + strand at 96.444 kb on - strand at 96.444 kb on - strand at 96.444 kb on - strand at 96.444 kb on - strand at 96.444 kb on - strand at 96.444 kb on - strand at 96.444 kb on - strand at 96.444 kb on - strand at 96.545 kb on + strand, within MPMX19_05413 at 96.545 kb on + strand, within MPMX19_05413 at 96.545 kb on + strand, within MPMX19_05413 at 96.546 kb on - strand, within MPMX19_05413 at 96.546 kb on - strand, within MPMX19_05413 at 96.546 kb on - strand, within MPMX19_05413 at 96.755 kb on + strand, within MPMX19_05413 at 96.755 kb on + strand, within MPMX19_05413 at 96.755 kb on + strand, within MPMX19_05413 at 96.756 kb on - strand, within MPMX19_05413 at 96.756 kb on - strand, within MPMX19_05413 at 96.756 kb on - strand, within MPMX19_05413 at 96.756 kb on - strand, within MPMX19_05413 at 96.756 kb on - strand, within MPMX19_05413 at 96.869 kb on + strand, within MPMX19_05413 at 96.869 kb on + strand, within MPMX19_05413 at 96.869 kb on + strand, within MPMX19_05413 at 96.869 kb on + strand, within MPMX19_05413 at 96.869 kb on + strand, within MPMX19_05413 at 96.870 kb on - strand, within MPMX19_05413 at 96.870 kb on - strand, within MPMX19_05413 at 96.870 kb on - strand, within MPMX19_05413 at 96.887 kb on + strand, within MPMX19_05413 at 96.887 kb on + strand, within MPMX19_05413 at 96.887 kb on + strand, within MPMX19_05413 at 96.887 kb on + strand, within MPMX19_05413 at 96.887 kb on + strand, within MPMX19_05413 at 96.887 kb on + strand, within MPMX19_05413 at 96.887 kb on + strand, within MPMX19_05413 at 96.887 kb on + strand, within MPMX19_05413 at 96.887 kb on + strand, within MPMX19_05413 at 96.887 kb on + strand, within MPMX19_05413 at 96.887 kb on + strand, within MPMX19_05413 at 96.887 kb on + strand, within MPMX19_05413 at 96.888 kb on - strand, within MPMX19_05413 at 96.888 kb on - strand, within MPMX19_05413 at 96.888 kb on - strand, within MPMX19_05413 at 96.888 kb on - strand, within MPMX19_05413 at 96.888 kb on - strand, within MPMX19_05413 at 96.888 kb on - strand, within MPMX19_05413 at 96.888 kb on - strand, within MPMX19_05413 at 96.888 kb on - strand, within MPMX19_05413 at 96.888 kb on - strand, within MPMX19_05413 at 96.888 kb on - strand, within MPMX19_05413 at 96.995 kb on - strand, within MPMX19_05413 at 97.136 kb on + strand, within MPMX19_05413 at 97.137 kb on - strand, within MPMX19_05413 at 97.137 kb on - strand, within MPMX19_05413 at 97.137 kb on - strand, within MPMX19_05413 at 97.443 kb on - strand, within MPMX19_05413 at 97.610 kb on + strand, within MPMX19_05413 at 97.610 kb on + strand, within MPMX19_05413 at 97.611 kb on - strand, within MPMX19_05413 at 97.611 kb on - strand, within MPMX19_05413 at 97.611 kb on - strand, within MPMX19_05413 at 97.763 kb on + strand, within MPMX19_05413 at 97.764 kb on - strand, within MPMX19_05413 at 97.976 kb on + strand, within MPMX19_05413 at 97.976 kb on + strand, within MPMX19_05413 at 97.976 kb on + strand, within MPMX19_05413 at 97.976 kb on + strand, within MPMX19_05413 at 97.976 kb on + strand, within MPMX19_05413 at 97.976 kb on + strand, within MPMX19_05413 at 97.976 kb on + strand, within MPMX19_05413 at 97.976 kb on + strand, within MPMX19_05413 at 97.976 kb on + strand, within MPMX19_05413 at 97.976 kb on + strand, within MPMX19_05413 at 97.976 kb on + strand, within MPMX19_05413 at 97.977 kb on - strand, within MPMX19_05413 at 97.977 kb on - strand, within MPMX19_05413 at 97.977 kb on - strand, within MPMX19_05413 at 97.977 kb on - strand, within MPMX19_05413 at 97.977 kb on - strand, within MPMX19_05413 at 97.977 kb on - strand, within MPMX19_05413 at 97.977 kb on - strand, within MPMX19_05413 at 97.977 kb on - strand, within MPMX19_05413 at 97.977 kb on - strand, within MPMX19_05413 at 97.977 kb on - strand, within MPMX19_05413 at 97.977 kb on - strand, within MPMX19_05413 at 97.977 kb on - strand, within MPMX19_05413 at 98.030 kb on + strand, within MPMX19_05413 at 98.030 kb on + strand, within MPMX19_05413 at 98.030 kb on + strand, within MPMX19_05413 at 98.030 kb on + strand, within MPMX19_05413 at 98.030 kb on + strand, within MPMX19_05413 at 98.030 kb on + strand, within MPMX19_05413 at 98.030 kb on + strand, within MPMX19_05413 at 98.030 kb on + strand, within MPMX19_05413 at 98.031 kb on - strand, within MPMX19_05413 at 98.031 kb on - strand, within MPMX19_05413 at 98.031 kb on - strand, within MPMX19_05413 at 98.031 kb on - strand, within MPMX19_05413 at 98.031 kb on - strand, within MPMX19_05413 at 98.031 kb on - strand, within MPMX19_05413 at 98.031 kb on - strand, within MPMX19_05413 at 98.232 kb on - strand, within MPMX19_05413 at 98.232 kb on - strand, within MPMX19_05413 at 98.232 kb on - strand, within MPMX19_05413 at 98.354 kb on + strand, within MPMX19_05413 at 98.355 kb on - strand, within MPMX19_05413 at 98.384 kb on + strand, within MPMX19_05413 at 98.384 kb on + strand, within MPMX19_05413 at 98.385 kb on - strand, within MPMX19_05413 at 98.388 kb on - strand, within MPMX19_05413 at 98.483 kb on + strand, within MPMX19_05413 at 98.483 kb on + strand, within MPMX19_05413 at 98.532 kb on + strand, within MPMX19_05413 at 98.552 kb on + strand, within MPMX19_05413 at 98.553 kb on - strand, within MPMX19_05413 at 98.553 kb on - strand, within MPMX19_05413 at 98.565 kb on - strand, within MPMX19_05413 at 98.586 kb on - strand, within MPMX19_05413 at 98.586 kb on - strand, within MPMX19_05413 at 98.624 kb on + strand, within MPMX19_05413 at 98.624 kb on + strand, within MPMX19_05413 at 98.625 kb on - strand, within MPMX19_05413 at 98.759 kb on + strand, within MPMX19_05413 at 98.759 kb on + strand, within MPMX19_05413 at 98.759 kb on + strand, within MPMX19_05413 at 98.759 kb on + strand, within MPMX19_05413 at 98.759 kb on + strand, within MPMX19_05413 at 98.759 kb on + strand, within MPMX19_05413 at 98.759 kb on + strand, within MPMX19_05413 at 98.759 kb on + strand, within MPMX19_05413 at 98.760 kb on - strand, within MPMX19_05413 at 98.760 kb on - strand, within MPMX19_05413 at 98.760 kb on - strand, within MPMX19_05413 at 98.760 kb on - strand, within MPMX19_05413 at 98.760 kb on - strand, within MPMX19_05413 at 98.760 kb on - strand, within MPMX19_05413 at 98.760 kb on - strand, within MPMX19_05413 at 98.760 kb on - strand, within MPMX19_05413 at 98.855 kb on + strand, within MPMX19_05413 at 98.855 kb on + strand, within MPMX19_05413 at 98.856 kb on - strand, within MPMX19_05413 at 98.856 kb on - strand, within MPMX19_05413 at 98.856 kb on - strand, within MPMX19_05413 at 99.110 kb on + strand at 99.110 kb on + strand at 99.110 kb on + strand at 99.110 kb on + strand at 99.110 kb on + strand at 99.110 kb on + strand at 99.111 kb on - strand at 99.111 kb on - strand at 99.111 kb on - strand at 99.111 kb on - strand at 99.111 kb on - strand at 99.111 kb on - strand at 99.111 kb on - strand at 99.111 kb on - strand at 99.111 kb on - strand at 99.111 kb on - strand at 99.111 kb on - strand at 99.111 kb on - strand at 99.111 kb on - strand at 99.111 kb on - strand at 99.111 kb on - strand at 99.111 kb on - strand at 99.111 kb on - strand at 99.209 kb on + strand at 99.209 kb on + strand at 99.209 kb on + strand at 99.209 kb on + strand at 99.209 kb on + strand at 99.209 kb on + strand at 99.209 kb on + strand at 99.210 kb on - strand at 99.210 kb on - strand at 99.210 kb on - strand at 99.384 kb on + strand at 99.385 kb on - strand at 99.385 kb on - strand at 99.468 kb on + strand at 99.468 kb on + strand at 99.468 kb on + strand at 99.468 kb on + strand at 99.468 kb on + strand at 99.468 kb on + strand at 99.468 kb on + strand at 99.468 kb on + strand at 99.468 kb on + strand at 99.468 kb on + strand at 99.468 kb on + strand at 99.468 kb on + strand at 99.468 kb on + strand at 99.468 kb on + strand at 99.468 kb on + strand at 99.469 kb on - strand at 99.469 kb on - strand at 99.469 kb on - strand at 99.469 kb on - strand at 99.469 kb on - strand at 99.469 kb on - strand at 99.469 kb on - strand at 99.469 kb on - strand at 99.469 kb on - strand at 99.469 kb on - strand at 100.174 kb on + strand at 100.174 kb on + strand at 100.175 kb on - strand at 100.175 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 95,191 + MPMX19_05412 0.51 -0.5 95,191 + MPMX19_05412 0.51 -0.3 95,191 + MPMX19_05412 0.51 -0.5 95,191 + MPMX19_05412 0.51 -1.0 95,191 + MPMX19_05412 0.51 +0.3 95,191 + MPMX19_05412 0.51 +2.5 95,191 + MPMX19_05412 0.51 -0.7 95,191 + MPMX19_05412 0.51 +0.7 95,192 - MPMX19_05412 0.51 -1.1 95,192 - MPMX19_05412 0.51 +0.1 95,192 - MPMX19_05412 0.51 -1.9 95,192 - MPMX19_05412 0.51 -2.2 95,192 - MPMX19_05412 0.51 +0.1 95,192 - MPMX19_05412 0.51 -0.6 95,192 - MPMX19_05412 0.51 -0.1 95,192 - MPMX19_05412 0.51 -1.9 95,192 - MPMX19_05412 0.51 +0.3 95,192 - MPMX19_05412 0.51 -1.2 95,192 - MPMX19_05412 0.51 +0.8 95,192 - MPMX19_05412 0.51 -0.5 95,192 - MPMX19_05412 0.51 -0.2 95,192 - MPMX19_05412 0.51 +0.1 95,192 - MPMX19_05412 0.51 -0.9 95,192 - MPMX19_05412 0.51 -0.6 95,302 + MPMX19_05412 0.57 -0.7 95,302 + MPMX19_05412 0.57 +0.7 95,303 - MPMX19_05412 0.57 -1.5 95,303 - MPMX19_05412 0.57 -1.8 95,303 - MPMX19_05412 0.57 +0.5 95,303 - MPMX19_05412 0.57 -1.0 95,599 + MPMX19_05412 0.74 -1.2 95,600 - MPMX19_05412 0.74 -1.1 95,600 - MPMX19_05412 0.74 +1.3 95,600 - MPMX19_05412 0.74 +0.3 95,600 - MPMX19_05412 0.74 +0.9 95,600 - MPMX19_05412 0.74 -0.7 96,443 + +0.2 96,443 + +0.0 96,443 + -2.7 96,443 + -0.8 96,443 + -0.6 96,444 - -1.2 96,444 - -0.7 96,444 - -0.8 96,444 - +0.7 96,444 - -1.4 96,444 - +0.5 96,444 - -1.1 96,444 - -1.5 96,545 + MPMX19_05413 0.12 -2.1 96,545 + MPMX19_05413 0.12 -0.4 96,545 + MPMX19_05413 0.12 +0.5 96,546 - MPMX19_05413 0.12 +0.5 96,546 - MPMX19_05413 0.12 -0.1 96,546 - MPMX19_05413 0.12 -0.5 96,755 + MPMX19_05413 0.19 -0.2 96,755 + MPMX19_05413 0.19 +0.6 96,755 + MPMX19_05413 0.19 +0.0 96,756 - MPMX19_05413 0.19 -0.1 96,756 - MPMX19_05413 0.19 -0.2 96,756 - MPMX19_05413 0.19 +1.3 96,756 - MPMX19_05413 0.19 +1.7 96,756 - MPMX19_05413 0.19 -2.0 96,869 + MPMX19_05413 0.23 -1.2 96,869 + MPMX19_05413 0.23 +0.3 96,869 + MPMX19_05413 0.23 -1.0 96,869 + MPMX19_05413 0.23 -1.4 96,869 + MPMX19_05413 0.23 -0.9 96,870 - MPMX19_05413 0.23 -2.1 96,870 - MPMX19_05413 0.23 -1.7 96,870 - MPMX19_05413 0.23 +0.5 96,887 + MPMX19_05413 0.23 -0.2 96,887 + MPMX19_05413 0.23 -0.1 96,887 + MPMX19_05413 0.23 -0.5 96,887 + MPMX19_05413 0.23 -0.5 96,887 + MPMX19_05413 0.23 +0.1 96,887 + MPMX19_05413 0.23 -1.0 96,887 + MPMX19_05413 0.23 +0.9 96,887 + MPMX19_05413 0.23 -2.1 96,887 + MPMX19_05413 0.23 -0.5 96,887 + MPMX19_05413 0.23 -0.6 96,887 + MPMX19_05413 0.23 -2.4 96,887 + MPMX19_05413 0.23 -1.2 96,888 - MPMX19_05413 0.23 +2.1 96,888 - MPMX19_05413 0.23 +0.7 96,888 - MPMX19_05413 0.23 -1.5 96,888 - MPMX19_05413 0.23 -0.9 96,888 - MPMX19_05413 0.23 -2.7 96,888 - MPMX19_05413 0.23 -1.0 96,888 - MPMX19_05413 0.23 +0.1 96,888 - MPMX19_05413 0.23 -1.2 96,888 - MPMX19_05413 0.23 -0.5 96,888 - MPMX19_05413 0.23 -1.7 96,995 - MPMX19_05413 0.27 -0.2 97,136 + MPMX19_05413 0.31 +0.3 97,137 - MPMX19_05413 0.31 -1.3 97,137 - MPMX19_05413 0.31 -0.9 97,137 - MPMX19_05413 0.31 -1.2 97,443 - MPMX19_05413 0.41 -0.5 97,610 + MPMX19_05413 0.46 -0.2 97,610 + MPMX19_05413 0.46 +1.5 97,611 - MPMX19_05413 0.46 -0.1 97,611 - MPMX19_05413 0.46 +1.1 97,611 - MPMX19_05413 0.46 -2.6 97,763 + MPMX19_05413 0.51 -0.3 97,764 - MPMX19_05413 0.51 +0.2 97,976 + MPMX19_05413 0.58 +1.4 97,976 + MPMX19_05413 0.58 -2.2 97,976 + MPMX19_05413 0.58 -1.4 97,976 + MPMX19_05413 0.58 +1.0 97,976 + MPMX19_05413 0.58 -1.2 97,976 + MPMX19_05413 0.58 -0.5 97,976 + MPMX19_05413 0.58 -0.2 97,976 + MPMX19_05413 0.58 -1.6 97,976 + MPMX19_05413 0.58 -0.4 97,976 + MPMX19_05413 0.58 +0.1 97,976 + MPMX19_05413 0.58 +1.1 97,977 - MPMX19_05413 0.58 +1.1 97,977 - MPMX19_05413 0.58 -1.2 97,977 - MPMX19_05413 0.58 +0.1 97,977 - MPMX19_05413 0.58 -0.7 97,977 - MPMX19_05413 0.58 +0.4 97,977 - MPMX19_05413 0.58 -1.0 97,977 - MPMX19_05413 0.58 -0.9 97,977 - MPMX19_05413 0.58 +0.5 97,977 - MPMX19_05413 0.58 -1.8 97,977 - MPMX19_05413 0.58 -1.5 97,977 - MPMX19_05413 0.58 -1.0 97,977 - MPMX19_05413 0.58 +0.7 98,030 + MPMX19_05413 0.59 -0.9 98,030 + MPMX19_05413 0.59 -1.2 98,030 + MPMX19_05413 0.59 -0.3 98,030 + MPMX19_05413 0.59 -0.5 98,030 + MPMX19_05413 0.59 +0.3 98,030 + MPMX19_05413 0.59 +0.4 98,030 + MPMX19_05413 0.59 -0.3 98,030 + MPMX19_05413 0.59 +0.5 98,031 - MPMX19_05413 0.60 +1.1 98,031 - MPMX19_05413 0.60 -2.0 98,031 - MPMX19_05413 0.60 -1.0 98,031 - MPMX19_05413 0.60 +1.5 98,031 - MPMX19_05413 0.60 -1.5 98,031 - MPMX19_05413 0.60 -0.6 98,031 - MPMX19_05413 0.60 -0.0 98,232 - MPMX19_05413 0.66 -0.0 98,232 - MPMX19_05413 0.66 +1.5 98,232 - MPMX19_05413 0.66 -0.2 98,354 + MPMX19_05413 0.70 -1.2 98,355 - MPMX19_05413 0.70 -0.7 98,384 + MPMX19_05413 0.71 +0.1 98,384 + MPMX19_05413 0.71 -0.9 98,385 - MPMX19_05413 0.71 +0.1 98,388 - MPMX19_05413 0.71 +0.1 98,483 + MPMX19_05413 0.74 -1.5 98,483 + MPMX19_05413 0.74 -0.2 98,532 + MPMX19_05413 0.75 +2.1 98,552 + MPMX19_05413 0.76 -1.0 98,553 - MPMX19_05413 0.76 +1.1 98,553 - MPMX19_05413 0.76 +0.4 98,565 - MPMX19_05413 0.76 -1.8 98,586 - MPMX19_05413 0.77 -0.5 98,586 - MPMX19_05413 0.77 -0.2 98,624 + MPMX19_05413 0.78 -0.0 98,624 + MPMX19_05413 0.78 -1.8 98,625 - MPMX19_05413 0.78 -1.0 98,759 + MPMX19_05413 0.83 +0.3 98,759 + MPMX19_05413 0.83 -1.5 98,759 + MPMX19_05413 0.83 +0.5 98,759 + MPMX19_05413 0.83 -1.3 98,759 + MPMX19_05413 0.83 -0.1 98,759 + MPMX19_05413 0.83 -0.0 98,759 + MPMX19_05413 0.83 +1.7 98,759 + MPMX19_05413 0.83 -0.5 98,760 - MPMX19_05413 0.83 -0.2 98,760 - MPMX19_05413 0.83 -0.8 98,760 - MPMX19_05413 0.83 -1.2 98,760 - MPMX19_05413 0.83 -0.7 98,760 - MPMX19_05413 0.83 -0.9 98,760 - MPMX19_05413 0.83 -0.5 98,760 - MPMX19_05413 0.83 -1.5 98,760 - MPMX19_05413 0.83 -2.0 98,855 + MPMX19_05413 0.86 +0.1 98,855 + MPMX19_05413 0.86 -1.1 98,856 - MPMX19_05413 0.86 -1.3 98,856 - MPMX19_05413 0.86 -1.2 98,856 - MPMX19_05413 0.86 -0.4 99,110 + +0.3 99,110 + -1.8 99,110 + -0.1 99,110 + -0.1 99,110 + +1.7 99,110 + -1.1 99,111 - -0.6 99,111 - +0.1 99,111 - -1.7 99,111 - -1.5 99,111 - -0.8 99,111 - -0.3 99,111 - -0.7 99,111 - -0.3 99,111 - -1.0 99,111 - -0.6 99,111 - +0.7 99,111 - -1.2 99,111 - +0.1 99,111 - -0.5 99,111 - -0.0 99,111 - +0.1 99,111 - -1.0 99,209 + -1.5 99,209 + +0.1 99,209 + -1.9 99,209 + +0.4 99,209 + -0.2 99,209 + +0.1 99,209 + -0.5 99,210 - -0.3 99,210 - -1.5 99,210 - -0.5 99,384 + -0.3 99,385 - +0.1 99,385 - -0.9 99,468 + -2.0 99,468 + -0.9 99,468 + -1.2 99,468 + -1.0 99,468 + -0.9 99,468 + +0.1 99,468 + -0.5 99,468 + +0.2 99,468 + +0.1 99,468 + -1.8 99,468 + -0.5 99,468 + -0.4 99,468 + -0.6 99,468 + -1.6 99,468 + +1.7 99,469 - -0.9 99,469 - +1.0 99,469 - -0.2 99,469 - -0.3 99,469 - +0.9 99,469 - +0.4 99,469 - +1.4 99,469 - -1.8 99,469 - +0.1 99,469 - -1.0 100,174 + -1.4 100,174 + -0.4 100,175 - -2.4 100,175 - -0.2
Or see this region's nucleotide sequence