Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05402

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05401 and MPMX19_05402 are separated by 91 nucleotidesMPMX19_05402 and MPMX19_05403 are separated by 121 nucleotidesMPMX19_05403 and MPMX19_05404 overlap by 4 nucleotides MPMX19_05401: MPMX19_05401 - 2-methylisocitrate lyase, at 81,725 to 82,570 _05401 MPMX19_05402: MPMX19_05402 - hypothetical protein, at 82,662 to 83,129 _05402 MPMX19_05403: MPMX19_05403 - hypothetical protein, at 83,251 to 84,000 _05403 MPMX19_05404: MPMX19_05404 - UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase, at 83,997 to 85,154 _05404 Position (kb) 82 83 84Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 81.677 kb on - strandat 82.023 kb on + strand, within MPMX19_05401at 82.023 kb on + strand, within MPMX19_05401at 82.023 kb on + strand, within MPMX19_05401at 82.023 kb on + strand, within MPMX19_05401at 82.023 kb on + strand, within MPMX19_05401at 82.023 kb on + strand, within MPMX19_05401at 82.023 kb on + strand, within MPMX19_05401at 82.023 kb on + strand, within MPMX19_05401at 82.023 kb on + strand, within MPMX19_05401at 82.024 kb on - strand, within MPMX19_05401at 82.024 kb on - strand, within MPMX19_05401at 82.050 kb on + strand, within MPMX19_05401at 82.051 kb on - strand, within MPMX19_05401at 82.051 kb on - strand, within MPMX19_05401at 82.051 kb on - strand, within MPMX19_05401at 82.194 kb on + strand, within MPMX19_05401at 82.195 kb on - strand, within MPMX19_05401at 82.195 kb on - strand, within MPMX19_05401at 82.195 kb on - strand, within MPMX19_05401at 82.195 kb on - strand, within MPMX19_05401at 82.608 kb on - strandat 82.699 kb on + strandat 82.699 kb on + strandat 82.699 kb on + strandat 82.700 kb on - strandat 82.700 kb on - strandat 82.700 kb on - strandat 82.700 kb on - strandat 82.700 kb on - strandat 82.700 kb on - strandat 82.700 kb on - strandat 82.837 kb on + strand, within MPMX19_05402at 82.837 kb on + strand, within MPMX19_05402at 82.837 kb on + strand, within MPMX19_05402at 82.837 kb on + strand, within MPMX19_05402at 82.837 kb on + strand, within MPMX19_05402at 82.837 kb on + strand, within MPMX19_05402at 82.837 kb on + strand, within MPMX19_05402at 82.837 kb on + strand, within MPMX19_05402at 82.837 kb on + strand, within MPMX19_05402at 82.837 kb on + strand, within MPMX19_05402at 82.837 kb on + strand, within MPMX19_05402at 82.838 kb on - strand, within MPMX19_05402at 82.838 kb on - strand, within MPMX19_05402at 82.838 kb on - strand, within MPMX19_05402at 82.838 kb on - strand, within MPMX19_05402at 82.838 kb on - strand, within MPMX19_05402at 82.838 kb on - strand, within MPMX19_05402at 82.838 kb on - strand, within MPMX19_05402at 82.838 kb on - strand, within MPMX19_05402at 82.838 kb on - strand, within MPMX19_05402at 82.838 kb on - strand, within MPMX19_05402at 83.247 kb on - strandat 83.247 kb on - strandat 83.247 kb on - strandat 83.980 kb on + strandat 83.980 kb on + strandat 83.980 kb on + strandat 83.981 kb on - strandat 83.981 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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81,677 - +1.4
82,023 + MPMX19_05401 0.35 -2.1
82,023 + MPMX19_05401 0.35 -2.0
82,023 + MPMX19_05401 0.35 +0.5
82,023 + MPMX19_05401 0.35 +0.5
82,023 + MPMX19_05401 0.35 +1.1
82,023 + MPMX19_05401 0.35 -1.1
82,023 + MPMX19_05401 0.35 -2.0
82,023 + MPMX19_05401 0.35 -0.1
82,023 + MPMX19_05401 0.35 -0.5
82,024 - MPMX19_05401 0.35 -1.3
82,024 - MPMX19_05401 0.35 +0.4
82,050 + MPMX19_05401 0.38 -0.6
82,051 - MPMX19_05401 0.39 -1.6
82,051 - MPMX19_05401 0.39 -0.6
82,051 - MPMX19_05401 0.39 -1.1
82,194 + MPMX19_05401 0.55 -0.6
82,195 - MPMX19_05401 0.56 -0.2
82,195 - MPMX19_05401 0.56 +1.1
82,195 - MPMX19_05401 0.56 -0.5
82,195 - MPMX19_05401 0.56 -0.5
82,608 - -1.0
82,699 + -0.6
82,699 + +0.2
82,699 + +0.4
82,700 - -1.1
82,700 - +0.0
82,700 - -0.7
82,700 - -0.7
82,700 - -1.8
82,700 - -0.5
82,700 - -1.2
82,837 + MPMX19_05402 0.37 -0.1
82,837 + MPMX19_05402 0.37 -0.7
82,837 + MPMX19_05402 0.37 -0.2
82,837 + MPMX19_05402 0.37 +0.0
82,837 + MPMX19_05402 0.37 -0.0
82,837 + MPMX19_05402 0.37 -0.7
82,837 + MPMX19_05402 0.37 +0.5
82,837 + MPMX19_05402 0.37 -0.1
82,837 + MPMX19_05402 0.37 -1.5
82,837 + MPMX19_05402 0.37 -1.7
82,837 + MPMX19_05402 0.37 -0.5
82,838 - MPMX19_05402 0.38 +0.8
82,838 - MPMX19_05402 0.38 +0.6
82,838 - MPMX19_05402 0.38 -0.7
82,838 - MPMX19_05402 0.38 +0.1
82,838 - MPMX19_05402 0.38 +0.3
82,838 - MPMX19_05402 0.38 +0.3
82,838 - MPMX19_05402 0.38 +0.1
82,838 - MPMX19_05402 0.38 +2.5
82,838 - MPMX19_05402 0.38 -1.9
82,838 - MPMX19_05402 0.38 +0.8
83,247 - +0.5
83,247 - -2.1
83,247 - -3.1
83,980 + -1.6
83,980 + -1.6
83,980 + +0.1
83,981 - -2.0
83,981 - -1.1

Or see this region's nucleotide sequence