Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05376

Experiment: NL-CCM, start OD=0.3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM, start OD=0.3
48,229	-		MPMX19_05374	0.80	-0.5
48,229	-		MPMX19_05374	0.80	+1.8
48,229	-		MPMX19_05374	0.80	-0.7
48,229	-		MPMX19_05374	0.80	-1.4
48,229	-		MPMX19_05374	0.80	-1.2
48,345	+		MPMX19_05374	0.86	-0.0
48,345	+		MPMX19_05374	0.86	-1.8
48,345	+		MPMX19_05374	0.86	-0.4
48,346	-		MPMX19_05374	0.87	-2.6
48,453	+				+0.0
48,454	-				-1.3
48,454	-				-0.5
48,454	-				-0.8
48,454	-				-0.2
48,454	-				-1.3
48,454	-				-0.3
48,498	+				-1.3
48,498	+				+0.6
48,498	+				+0.5
48,498	+				-1.6
48,498	+				+0.1
48,498	+				-0.6
48,498	+				+0.3
48,498	+				+0.5
48,498	+				+1.7
48,498	+				-0.6
48,498	+				-0.5
48,498	+				+0.4
48,498	+				-0.9
48,498	+				+0.1
48,498	+				-1.0
48,499	-				-1.9
48,499	-				-1.5
48,499	-				-0.2
48,499	-				-0.6
48,499	-				-1.3
48,499	-				-1.4
48,499	-				+0.7
48,499	-				-0.5
48,499	-				-0.8
48,499	-				+1.1
48,499	-				-0.5
48,499	-				-0.5
48,499	-				-1.4
48,499	-				-3.0
48,499	-				-0.9
48,499	-				-1.3
48,500	+				-0.5
48,500	+				-0.1
48,500	+				-0.2
48,500	+				+1.3
48,500	+				+0.3
48,500	+				-0.0
48,500	+				-0.3
48,500	+				-1.8
48,500	+				-1.5
48,500	+				+0.3
48,500	+				-0.7
48,500	+				-0.7
48,500	+				-0.3
48,500	+				-1.6
48,500	+				-0.3
48,500	+				-1.0
48,500	+				+1.6
48,500	+				+0.7
48,501	-				-1.5
48,501	-				+0.1
48,501	-				+0.5
48,501	-				-2.0
48,501	-				+0.1
48,501	-				-1.6
48,501	-				-0.3
48,501	-				-0.0
48,501	-				+0.5
48,501	-				+0.1
48,501	-				-0.6
48,501	-				-1.3
48,501	-				-0.7
48,501	-				-0.6
48,501	-				+0.1
48,501	-				-1.4
48,501	-				-1.0
48,501	-				-0.0
48,501	-				+0.1
48,501	-				-1.5
48,501	-				+0.8
48,501	-				-1.7
48,501	-				+0.7
48,501	-				-0.5
48,501	-				-0.3
48,592	-				-0.0
48,592	-				+0.0
48,592	-				+0.4
48,729	+		MPMX19_05375	0.25	-1.8
48,729	+		MPMX19_05375	0.25	+1.1
48,729	+		MPMX19_05375	0.25	+1.0
48,729	+		MPMX19_05375	0.25	+0.1
48,729	+		MPMX19_05375	0.25	-0.2
48,729	+		MPMX19_05375	0.25	-0.8
48,729	+		MPMX19_05375	0.25	+1.1
48,729	+		MPMX19_05375	0.25	-2.2
48,729	+		MPMX19_05375	0.25	+0.3
48,730	-		MPMX19_05375	0.26	+0.8
48,730	-		MPMX19_05375	0.26	-0.2
48,730	-		MPMX19_05375	0.26	-0.6
48,730	-		MPMX19_05375	0.26	-0.6
48,730	-		MPMX19_05375	0.26	-1.2
48,730	-		MPMX19_05375	0.26	+0.5
48,730	-		MPMX19_05375	0.26	-1.2
48,731	+		MPMX19_05375	0.26	-1.0
49,095	+				+0.5
49,095	+				+0.7
49,096	-				+0.3
49,096	-				-1.8
49,229	+				-1.0
49,229	+				-0.4
49,229	+				-0.7
49,230	-				-0.4
49,230	-				-0.3
49,230	-				-0.7
49,230	-				-0.7
49,614	+		MPMX19_05376	0.53	-2.0
49,614	+		MPMX19_05376	0.53	-0.2
49,614	+		MPMX19_05376	0.53	-1.2
49,614	+		MPMX19_05376	0.53	-2.8
49,614	+		MPMX19_05376	0.53	+0.1
49,614	+		MPMX19_05376	0.53	+0.8
49,614	+		MPMX19_05376	0.53	-0.5
49,614	+		MPMX19_05376	0.53	+0.0
49,614	+		MPMX19_05376	0.53	+0.1
49,615	-		MPMX19_05376	0.53	-1.2
49,615	-		MPMX19_05376	0.53	-1.6
49,615	-		MPMX19_05376	0.53	+0.4
49,615	-		MPMX19_05376	0.53	-1.5
49,615	-		MPMX19_05376	0.53	-1.2
49,615	-		MPMX19_05376	0.53	-0.3
49,615	-		MPMX19_05376	0.53	-1.1
49,615	-		MPMX19_05376	0.53	-1.7
49,615	-		MPMX19_05376	0.53	+0.7
49,615	-		MPMX19_05376	0.53	-0.2
49,615	-		MPMX19_05376	0.53	-1.7
50,017	+				-0.2
50,017	+				+1.3
50,018	-				+0.4
50,018	-				-0.2
50,018	-				-0.1
50,018	-				-1.5
50,103	+				-1.1
50,103	+				-1.7
50,103	+				-1.0
50,104	-				-2.6
50,179	-				-1.0
50,202	+		MPMX19_05377	0.12	+1.0
50,202	+		MPMX19_05377	0.12	-1.0
50,202	+		MPMX19_05377	0.12	-1.1
50,208	+		MPMX19_05377	0.13	-1.5
50,208	+		MPMX19_05377	0.13	-1.0
50,208	+		MPMX19_05377	0.13	-0.8
50,208	+		MPMX19_05377	0.13	-0.4
50,208	+		MPMX19_05377	0.13	-2.2
50,208	+		MPMX19_05377	0.13	-1.3
50,208	+		MPMX19_05377	0.13	-1.6
50,278	+		MPMX19_05377	0.23	-0.1
50,278	+		MPMX19_05377	0.23	-0.7
50,278	+		MPMX19_05377	0.23	-0.5
50,278	+		MPMX19_05377	0.23	+0.3
50,278	+		MPMX19_05377	0.23	+0.1
50,278	+		MPMX19_05377	0.23	-0.6
50,278	+		MPMX19_05377	0.23	+0.3
50,278	+		MPMX19_05377	0.23	-0.9
50,278	+		MPMX19_05377	0.23	+0.8
50,278	+		MPMX19_05377	0.23	-1.2
50,278	+		MPMX19_05377	0.23	-1.7
50,278	+		MPMX19_05377	0.23	+0.9
50,278	+		MPMX19_05377	0.23	+0.1
50,279	-		MPMX19_05377	0.23	-0.8
50,279	-		MPMX19_05377	0.23	-0.1
50,279	-		MPMX19_05377	0.23	+0.4
50,279	-		MPMX19_05377	0.23	-1.8
50,279	-		MPMX19_05377	0.23	-0.1
50,279	-		MPMX19_05377	0.23	-1.2
50,279	-		MPMX19_05377	0.23	+0.4
50,279	-		MPMX19_05377	0.23	-1.0
50,279	-		MPMX19_05377	0.23	-0.5
50,279	-		MPMX19_05377	0.23	-0.5
50,279	-		MPMX19_05377	0.23	-1.3
50,773	+				-1.1
50,773	+				-0.7
50,774	-				+0.5
50,774	-				-1.2
50,774	-				-0.6
50,788	+				-1.7
50,788	+				+0.3
50,788	+				-0.6
50,788	+				-0.2
50,789	-				-1.9
50,789	-				-1.9
50,789	-				+0.8
50,789	-				-1.2
50,789	-				-1.5
50,789	-				-0.6
50,849	+				-2.0
50,850	-				+0.8
50,856	+				+0.5
50,856	+				+3.1
50,856	+				-1.0
50,857	-				+0.2
50,857	-				-0.3
50,929	+				-1.9
50,929	+				+0.8
50,929	+				+0.1
50,929	+				-1.0
50,929	+				-0.8
50,930	-				+0.2
50,930	-				-0.3
50,930	-				+1.1
50,930	-				-2.0
50,930	-				-1.9