Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05359 and MPMX19_05360 overlap by 4 nucleotides MPMX19_05360 and MPMX19_05361 are separated by 77 nucleotides MPMX19_05361 and MPMX19_05362 are separated by 107 nucleotides
MPMX19_05359: MPMX19_05359 - hypothetical protein, at 34,864 to 36,135
_05359
MPMX19_05360: MPMX19_05360 - hypothetical protein, at 36,132 to 36,884
_05360
MPMX19_05361: MPMX19_05361 - CRP-like cAMP-activated global transcriptional regulator, at 36,962 to 37,672
_05361
MPMX19_05362: MPMX19_05362 - hypothetical protein, at 37,780 to 38,160
_05362
Position (kb) 36
37 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 35.152 kb on + strand, within MPMX19_05359 at 35.152 kb on + strand, within MPMX19_05359 at 35.152 kb on + strand, within MPMX19_05359 at 35.152 kb on + strand, within MPMX19_05359 at 35.152 kb on + strand, within MPMX19_05359 at 35.153 kb on - strand, within MPMX19_05359 at 35.153 kb on - strand, within MPMX19_05359 at 35.153 kb on - strand, within MPMX19_05359 at 35.153 kb on - strand, within MPMX19_05359 at 35.153 kb on - strand, within MPMX19_05359 at 35.153 kb on - strand, within MPMX19_05359 at 35.153 kb on - strand, within MPMX19_05359 at 35.153 kb on - strand, within MPMX19_05359 at 35.153 kb on - strand, within MPMX19_05359 at 35.153 kb on - strand, within MPMX19_05359 at 35.570 kb on + strand, within MPMX19_05359 at 35.570 kb on + strand, within MPMX19_05359 at 35.570 kb on + strand, within MPMX19_05359 at 35.570 kb on + strand, within MPMX19_05359 at 35.570 kb on + strand, within MPMX19_05359 at 35.570 kb on + strand, within MPMX19_05359 at 35.570 kb on + strand, within MPMX19_05359 at 35.571 kb on - strand, within MPMX19_05359 at 35.571 kb on - strand, within MPMX19_05359 at 35.571 kb on - strand, within MPMX19_05359 at 35.571 kb on - strand, within MPMX19_05359 at 35.571 kb on - strand, within MPMX19_05359 at 35.815 kb on + strand, within MPMX19_05359 at 35.815 kb on + strand, within MPMX19_05359 at 35.815 kb on + strand, within MPMX19_05359 at 35.816 kb on - strand, within MPMX19_05359 at 35.816 kb on - strand, within MPMX19_05359 at 35.842 kb on + strand, within MPMX19_05359 at 35.842 kb on + strand, within MPMX19_05359 at 35.842 kb on + strand, within MPMX19_05359 at 35.842 kb on + strand, within MPMX19_05359 at 35.842 kb on + strand, within MPMX19_05359 at 35.843 kb on - strand, within MPMX19_05359 at 35.843 kb on - strand, within MPMX19_05359 at 35.843 kb on - strand, within MPMX19_05359 at 35.843 kb on - strand, within MPMX19_05359 at 35.843 kb on - strand, within MPMX19_05359 at 36.073 kb on + strand at 36.073 kb on + strand at 36.073 kb on + strand at 36.073 kb on + strand at 36.073 kb on + strand at 36.073 kb on + strand at 36.073 kb on + strand at 36.073 kb on + strand at 36.074 kb on - strand at 36.144 kb on + strand at 36.144 kb on + strand at 36.144 kb on + strand at 36.144 kb on + strand at 36.144 kb on + strand at 36.144 kb on + strand at 36.144 kb on + strand at 36.144 kb on + strand at 36.144 kb on + strand at 36.144 kb on + strand at 36.144 kb on + strand at 36.145 kb on - strand at 36.145 kb on - strand at 36.145 kb on - strand at 36.145 kb on - strand at 36.145 kb on - strand at 36.145 kb on - strand at 36.204 kb on + strand at 36.204 kb on + strand at 36.204 kb on + strand at 36.204 kb on + strand at 36.204 kb on + strand at 36.204 kb on + strand at 36.204 kb on + strand at 36.205 kb on - strand at 36.205 kb on - strand at 36.205 kb on - strand at 36.205 kb on - strand at 36.205 kb on - strand at 36.205 kb on - strand at 36.205 kb on - strand at 36.205 kb on - strand at 36.205 kb on - strand at 36.325 kb on - strand, within MPMX19_05360 at 36.325 kb on - strand, within MPMX19_05360 at 36.341 kb on + strand, within MPMX19_05360 at 36.342 kb on - strand, within MPMX19_05360 at 36.342 kb on - strand, within MPMX19_05360 at 36.393 kb on + strand, within MPMX19_05360 at 36.394 kb on - strand, within MPMX19_05360 at 36.394 kb on - strand, within MPMX19_05360 at 36.394 kb on - strand, within MPMX19_05360 at 36.394 kb on - strand, within MPMX19_05360 at 36.394 kb on - strand, within MPMX19_05360 at 36.394 kb on - strand, within MPMX19_05360 at 36.501 kb on + strand, within MPMX19_05360 at 36.501 kb on + strand, within MPMX19_05360 at 36.501 kb on + strand, within MPMX19_05360 at 36.501 kb on + strand, within MPMX19_05360 at 36.501 kb on + strand, within MPMX19_05360 at 36.501 kb on + strand, within MPMX19_05360 at 36.502 kb on - strand, within MPMX19_05360 at 36.502 kb on - strand, within MPMX19_05360 at 36.883 kb on - strand at 36.883 kb on - strand at 36.883 kb on - strand at 36.883 kb on - strand at 36.883 kb on - strand at 36.898 kb on - strand at 37.460 kb on + strand, within MPMX19_05361 at 37.460 kb on + strand, within MPMX19_05361 at 37.460 kb on + strand, within MPMX19_05361 at 37.460 kb on + strand, within MPMX19_05361 at 37.460 kb on + strand, within MPMX19_05361 at 37.460 kb on + strand, within MPMX19_05361 at 37.461 kb on - strand, within MPMX19_05361 at 37.461 kb on - strand, within MPMX19_05361 at 37.461 kb on - strand, within MPMX19_05361 at 37.461 kb on - strand, within MPMX19_05361 at 37.471 kb on + strand, within MPMX19_05361 at 37.471 kb on + strand, within MPMX19_05361 at 37.471 kb on + strand, within MPMX19_05361 at 37.471 kb on + strand, within MPMX19_05361 at 37.472 kb on - strand, within MPMX19_05361 at 37.472 kb on - strand, within MPMX19_05361 at 37.472 kb on - strand, within MPMX19_05361 at 37.472 kb on - strand, within MPMX19_05361 at 37.472 kb on - strand, within MPMX19_05361 at 37.595 kb on + strand, within MPMX19_05361 at 37.595 kb on + strand, within MPMX19_05361 at 37.595 kb on + strand, within MPMX19_05361 at 37.595 kb on + strand, within MPMX19_05361 at 37.595 kb on + strand, within MPMX19_05361 at 37.595 kb on + strand, within MPMX19_05361 at 37.595 kb on + strand, within MPMX19_05361 at 37.595 kb on + strand, within MPMX19_05361 at 37.596 kb on - strand, within MPMX19_05361 at 37.596 kb on - strand, within MPMX19_05361 at 37.596 kb on - strand, within MPMX19_05361 at 37.596 kb on - strand, within MPMX19_05361 at 37.596 kb on - strand, within MPMX19_05361 at 37.609 kb on + strand at 37.609 kb on + strand at 37.610 kb on - strand at 37.610 kb on - strand at 37.670 kb on + strand at 37.683 kb on + strand at 37.683 kb on + strand at 37.683 kb on + strand at 37.683 kb on + strand at 37.683 kb on + strand at 37.683 kb on + strand at 37.683 kb on + strand at 37.683 kb on + strand at 37.683 kb on + strand at 37.684 kb on - strand at 37.684 kb on - strand at 37.684 kb on - strand at 37.684 kb on - strand at 37.691 kb on + strand at 37.691 kb on + strand at 37.691 kb on + strand at 37.692 kb on - strand at 37.692 kb on - strand at 37.728 kb on + strand at 37.728 kb on + strand at 37.728 kb on + strand at 37.728 kb on + strand at 37.728 kb on + strand at 37.728 kb on + strand at 37.728 kb on + strand at 37.728 kb on + strand at 37.729 kb on - strand at 37.729 kb on - strand at 37.729 kb on - strand at 37.729 kb on - strand at 37.821 kb on + strand, within MPMX19_05362 at 37.822 kb on - strand, within MPMX19_05362
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 35,152 + MPMX19_05359 0.23 -1.8 35,152 + MPMX19_05359 0.23 +0.1 35,152 + MPMX19_05359 0.23 -1.3 35,152 + MPMX19_05359 0.23 +0.6 35,152 + MPMX19_05359 0.23 +0.3 35,153 - MPMX19_05359 0.23 +1.1 35,153 - MPMX19_05359 0.23 -0.5 35,153 - MPMX19_05359 0.23 -0.4 35,153 - MPMX19_05359 0.23 -0.5 35,153 - MPMX19_05359 0.23 -0.9 35,153 - MPMX19_05359 0.23 -1.3 35,153 - MPMX19_05359 0.23 -0.2 35,153 - MPMX19_05359 0.23 -0.6 35,153 - MPMX19_05359 0.23 -0.1 35,153 - MPMX19_05359 0.23 -0.7 35,570 + MPMX19_05359 0.56 +0.1 35,570 + MPMX19_05359 0.56 -1.6 35,570 + MPMX19_05359 0.56 +0.4 35,570 + MPMX19_05359 0.56 -1.8 35,570 + MPMX19_05359 0.56 -0.2 35,570 + MPMX19_05359 0.56 +0.1 35,570 + MPMX19_05359 0.56 +0.3 35,571 - MPMX19_05359 0.56 +1.1 35,571 - MPMX19_05359 0.56 -0.5 35,571 - MPMX19_05359 0.56 -1.2 35,571 - MPMX19_05359 0.56 -0.3 35,571 - MPMX19_05359 0.56 +1.4 35,815 + MPMX19_05359 0.75 -2.0 35,815 + MPMX19_05359 0.75 -2.3 35,815 + MPMX19_05359 0.75 -1.3 35,816 - MPMX19_05359 0.75 -2.0 35,816 - MPMX19_05359 0.75 -1.8 35,842 + MPMX19_05359 0.77 +0.1 35,842 + MPMX19_05359 0.77 -0.1 35,842 + MPMX19_05359 0.77 -0.6 35,842 + MPMX19_05359 0.77 -0.0 35,842 + MPMX19_05359 0.77 -0.9 35,843 - MPMX19_05359 0.77 +0.1 35,843 - MPMX19_05359 0.77 +0.1 35,843 - MPMX19_05359 0.77 -0.2 35,843 - MPMX19_05359 0.77 +0.7 35,843 - MPMX19_05359 0.77 -0.5 36,073 + -0.3 36,073 + -1.3 36,073 + -3.0 36,073 + +1.4 36,073 + -1.2 36,073 + +0.3 36,073 + +1.4 36,073 + -0.3 36,074 - -0.9 36,144 + +0.7 36,144 + -1.0 36,144 + -1.7 36,144 + -0.7 36,144 + -1.3 36,144 + +0.2 36,144 + +1.3 36,144 + -0.3 36,144 + +0.1 36,144 + +0.0 36,144 + -1.3 36,145 - -0.2 36,145 - -0.8 36,145 - +0.4 36,145 - -0.8 36,145 - +0.4 36,145 - -1.3 36,204 + -0.5 36,204 + +1.3 36,204 + +0.0 36,204 + +1.4 36,204 + -1.0 36,204 + -0.7 36,204 + -0.9 36,205 - +0.5 36,205 - -0.6 36,205 - +0.7 36,205 - -1.0 36,205 - +1.8 36,205 - -1.3 36,205 - -0.5 36,205 - -0.4 36,205 - -0.7 36,325 - MPMX19_05360 0.26 -0.7 36,325 - MPMX19_05360 0.26 +0.8 36,341 + MPMX19_05360 0.28 +0.1 36,342 - MPMX19_05360 0.28 +1.5 36,342 - MPMX19_05360 0.28 +0.1 36,393 + MPMX19_05360 0.35 -0.2 36,394 - MPMX19_05360 0.35 -1.2 36,394 - MPMX19_05360 0.35 -0.6 36,394 - MPMX19_05360 0.35 -0.8 36,394 - MPMX19_05360 0.35 -1.5 36,394 - MPMX19_05360 0.35 -1.0 36,394 - MPMX19_05360 0.35 +1.4 36,501 + MPMX19_05360 0.49 -0.2 36,501 + MPMX19_05360 0.49 -0.6 36,501 + MPMX19_05360 0.49 +0.2 36,501 + MPMX19_05360 0.49 +0.6 36,501 + MPMX19_05360 0.49 -0.9 36,501 + MPMX19_05360 0.49 +0.3 36,502 - MPMX19_05360 0.49 -0.4 36,502 - MPMX19_05360 0.49 +0.3 36,883 - -0.7 36,883 - -0.2 36,883 - -0.1 36,883 - -1.1 36,883 - -1.3 36,898 - -0.6 37,460 + MPMX19_05361 0.70 -0.7 37,460 + MPMX19_05361 0.70 +1.6 37,460 + MPMX19_05361 0.70 +0.2 37,460 + MPMX19_05361 0.70 -0.9 37,460 + MPMX19_05361 0.70 -1.9 37,460 + MPMX19_05361 0.70 -2.0 37,461 - MPMX19_05361 0.70 -0.8 37,461 - MPMX19_05361 0.70 -1.2 37,461 - MPMX19_05361 0.70 -1.8 37,461 - MPMX19_05361 0.70 +0.4 37,471 + MPMX19_05361 0.72 -0.7 37,471 + MPMX19_05361 0.72 -1.3 37,471 + MPMX19_05361 0.72 -0.9 37,471 + MPMX19_05361 0.72 -0.7 37,472 - MPMX19_05361 0.72 -0.4 37,472 - MPMX19_05361 0.72 +0.2 37,472 - MPMX19_05361 0.72 -1.2 37,472 - MPMX19_05361 0.72 -1.2 37,472 - MPMX19_05361 0.72 -0.6 37,595 + MPMX19_05361 0.89 -1.8 37,595 + MPMX19_05361 0.89 -0.5 37,595 + MPMX19_05361 0.89 -0.7 37,595 + MPMX19_05361 0.89 -1.2 37,595 + MPMX19_05361 0.89 -0.3 37,595 + MPMX19_05361 0.89 -1.2 37,595 + MPMX19_05361 0.89 +1.4 37,595 + MPMX19_05361 0.89 -1.8 37,596 - MPMX19_05361 0.89 -1.7 37,596 - MPMX19_05361 0.89 -0.3 37,596 - MPMX19_05361 0.89 -1.7 37,596 - MPMX19_05361 0.89 +1.8 37,596 - MPMX19_05361 0.89 +0.9 37,609 + +0.9 37,609 + -1.6 37,610 - -0.5 37,610 - -1.3 37,670 + +0.3 37,683 + +0.5 37,683 + -0.3 37,683 + +0.5 37,683 + -0.7 37,683 + -0.7 37,683 + -0.9 37,683 + -0.5 37,683 + -0.9 37,683 + -0.7 37,684 - -0.7 37,684 - +1.0 37,684 - -0.3 37,684 - +0.1 37,691 + -2.0 37,691 + +0.7 37,691 + -0.2 37,692 - +1.5 37,692 - -0.9 37,728 + -1.0 37,728 + -1.0 37,728 + -0.0 37,728 + -1.2 37,728 + -0.9 37,728 + -1.0 37,728 + -0.7 37,728 + +1.1 37,729 - -0.6 37,729 - -0.5 37,729 - -1.3 37,729 - +0.7 37,821 + MPMX19_05362 0.11 -1.5 37,822 - MPMX19_05362 0.11 -0.1
Or see this region's nucleotide sequence