Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05336

Experiment: NL-CCM, start OD=0.3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM, start OD=0.3
5,054	-		MPMX19_05335	0.46	+0.1
5,128	+		MPMX19_05335	0.52	-0.5
5,128	+		MPMX19_05335	0.52	-0.5
5,128	+		MPMX19_05335	0.52	-0.9
5,128	+		MPMX19_05335	0.52	+0.3
5,128	+		MPMX19_05335	0.52	+0.7
5,128	+		MPMX19_05335	0.52	+0.0
5,128	+		MPMX19_05335	0.52	-0.3
5,128	+		MPMX19_05335	0.52	+1.1
5,128	+		MPMX19_05335	0.52	+0.1
5,128	+		MPMX19_05335	0.52	-1.7
5,128	+		MPMX19_05335	0.52	+0.5
5,128	+		MPMX19_05335	0.52	+0.3
5,128	+		MPMX19_05335	0.52	-0.1
5,128	+		MPMX19_05335	0.52	-0.0
5,128	+		MPMX19_05335	0.52	-1.2
5,128	+		MPMX19_05335	0.52	+0.4
5,128	+		MPMX19_05335	0.52	-0.2
5,128	+		MPMX19_05335	0.52	+0.5
5,128	+		MPMX19_05335	0.52	-1.1
5,129	-		MPMX19_05335	0.52	-0.8
5,129	-		MPMX19_05335	0.52	-0.8
5,129	-		MPMX19_05335	0.52	-1.9
5,129	-		MPMX19_05335	0.52	-1.5
5,129	-		MPMX19_05335	0.52	-2.3
5,129	-		MPMX19_05335	0.52	-0.5
5,129	-		MPMX19_05335	0.52	-0.6
5,129	-		MPMX19_05335	0.52	-1.1
5,129	-		MPMX19_05335	0.52	-0.0
5,129	-		MPMX19_05335	0.52	-0.6
5,129	-		MPMX19_05335	0.52	-0.3
5,129	-		MPMX19_05335	0.52	+0.5
5,129	-		MPMX19_05335	0.52	+0.8
5,129	-		MPMX19_05335	0.52	-0.9
5,129	-		MPMX19_05335	0.52	-0.5
5,129	-		MPMX19_05335	0.52	+0.4
5,129	-		MPMX19_05335	0.52	-1.0
5,350	+		MPMX19_05335	0.70	+0.1
5,350	+		MPMX19_05335	0.70	-2.1
5,350	+		MPMX19_05335	0.70	-1.2
5,351	-		MPMX19_05335	0.70	-1.2
5,351	-		MPMX19_05335	0.70	-1.4
5,351	-		MPMX19_05335	0.70	-0.4
5,351	-		MPMX19_05335	0.70	-0.7
5,389	+		MPMX19_05335	0.73	-0.5
5,389	+		MPMX19_05335	0.73	+0.6
5,389	+		MPMX19_05335	0.73	+0.7
5,389	+		MPMX19_05335	0.73	-1.2
5,389	+		MPMX19_05335	0.73	+0.5
5,389	+		MPMX19_05335	0.73	+0.4
5,389	+		MPMX19_05335	0.73	-0.7
5,389	+		MPMX19_05335	0.73	-1.2
5,389	+		MPMX19_05335	0.73	+0.3
5,389	+		MPMX19_05335	0.73	+0.0
5,389	+		MPMX19_05335	0.73	+0.2
5,389	+		MPMX19_05335	0.73	-1.2
5,390	-		MPMX19_05335	0.73	+1.3
5,390	-		MPMX19_05335	0.73	-0.5
5,390	-		MPMX19_05335	0.73	-1.3
5,390	-		MPMX19_05335	0.73	-1.2
5,390	-		MPMX19_05335	0.73	-0.3
5,390	-		MPMX19_05335	0.73	-2.1
5,390	-		MPMX19_05335	0.73	-0.7
5,390	-		MPMX19_05335	0.73	-0.9
5,390	-		MPMX19_05335	0.73	-0.3
5,390	-		MPMX19_05335	0.73	-0.9
5,390	-		MPMX19_05335	0.73	-0.4
5,390	-		MPMX19_05335	0.73	+0.7
5,390	-		MPMX19_05335	0.73	-0.7
5,390	-		MPMX19_05335	0.73	-1.3
5,390	-		MPMX19_05335	0.73	-1.2
5,390	-		MPMX19_05335	0.73	-0.7
5,473	-		MPMX19_05335	0.79	-0.8
5,473	-		MPMX19_05335	0.79	+0.6
5,473	-		MPMX19_05335	0.79	-0.6
5,473	-		MPMX19_05335	0.79	-0.6
5,573	+		MPMX19_05335	0.87	-0.1
5,573	+		MPMX19_05335	0.87	-0.6
5,573	+		MPMX19_05335	0.87	-1.3
5,573	+		MPMX19_05335	0.87	+1.4
5,778	+				-0.0
5,985	+				+0.6
5,985	+				+0.5
5,985	+				-0.7
5,985	+				+0.9
5,985	+				-0.4
5,985	+				-1.3
5,985	+				+0.1
5,985	+				-1.6
5,986	-				+0.2
5,986	-				+0.3
5,986	-				-0.5
5,986	-				-1.3
5,986	-				+1.4
5,986	-				+0.3
5,986	-				+1.5
5,986	-				-1.0
5,986	-				-0.3
5,986	-				-1.2
6,015	+				-0.8
6,015	+				-1.7
6,015	+				+1.1
6,015	+				+1.3
6,016	-				+0.4
6,016	-				-0.3
6,336	+		MPMX19_05336	0.21	-2.1
6,336	+		MPMX19_05336	0.21	+0.5
6,336	+		MPMX19_05336	0.21	+0.6
6,336	+		MPMX19_05336	0.21	-0.9
6,336	+		MPMX19_05336	0.21	-0.5
6,336	+		MPMX19_05336	0.21	+0.3
6,336	+		MPMX19_05336	0.21	-1.3
6,336	+		MPMX19_05336	0.21	-0.9
6,336	+		MPMX19_05336	0.21	+1.0
6,336	+		MPMX19_05336	0.21	-0.5
6,336	+		MPMX19_05336	0.21	+0.0
6,336	+		MPMX19_05336	0.21	+0.3
6,336	+		MPMX19_05336	0.21	-0.5
6,336	+		MPMX19_05336	0.21	-1.8
6,336	+		MPMX19_05336	0.21	+0.5
6,337	-		MPMX19_05336	0.21	-0.3
6,337	-		MPMX19_05336	0.21	-0.3
6,337	-		MPMX19_05336	0.21	+0.3
6,337	-		MPMX19_05336	0.21	-1.5
6,337	-		MPMX19_05336	0.21	+0.3
6,337	-		MPMX19_05336	0.21	-1.0
6,337	-		MPMX19_05336	0.21	-1.7
6,337	-		MPMX19_05336	0.21	-0.4
6,337	-		MPMX19_05336	0.21	-1.0
6,337	-		MPMX19_05336	0.21	-1.9
6,337	-		MPMX19_05336	0.21	-0.3
6,337	-		MPMX19_05336	0.21	+0.3
6,337	-		MPMX19_05336	0.21	-0.2
6,337	-		MPMX19_05336	0.21	-1.2
6,337	-		MPMX19_05336	0.21	-2.9
6,337	-		MPMX19_05336	0.21	+0.9
6,337	-		MPMX19_05336	0.21	-1.3
6,337	-		MPMX19_05336	0.21	+0.4
6,337	-		MPMX19_05336	0.21	+0.1
6,337	-		MPMX19_05336	0.21	+0.2
6,337	-		MPMX19_05336	0.21	-1.0
6,337	-		MPMX19_05336	0.21	-1.2
6,337	-		MPMX19_05336	0.21	+0.6
6,337	-		MPMX19_05336	0.21	+0.4
6,777	+		MPMX19_05336	0.37	-2.0
6,777	+		MPMX19_05336	0.37	-0.0
6,777	+		MPMX19_05336	0.37	-0.3
6,777	+		MPMX19_05336	0.37	+0.1
6,777	+		MPMX19_05336	0.37	+1.5
6,777	+		MPMX19_05336	0.37	-0.5
6,778	-		MPMX19_05336	0.37	-0.8
6,778	-		MPMX19_05336	0.37	+0.3
6,778	-		MPMX19_05336	0.37	+0.9
6,778	-		MPMX19_05336	0.37	+0.4
6,778	-		MPMX19_05336	0.37	+0.1
6,778	-		MPMX19_05336	0.37	-0.8
6,778	-		MPMX19_05336	0.37	-0.0
6,778	-		MPMX19_05336	0.37	+1.0
6,778	-		MPMX19_05336	0.37	+0.2
6,801	+		MPMX19_05336	0.38	+1.6
6,801	+		MPMX19_05336	0.38	-0.0
6,801	+		MPMX19_05336	0.38	-0.0
6,801	+		MPMX19_05336	0.38	+0.8
6,801	+		MPMX19_05336	0.38	-0.3
6,801	+		MPMX19_05336	0.38	-1.6
6,801	+		MPMX19_05336	0.38	+0.5
6,802	-		MPMX19_05336	0.38	-1.6
6,802	-		MPMX19_05336	0.38	+1.1
6,802	-		MPMX19_05336	0.38	-0.9
6,912	+		MPMX19_05336	0.42	-1.4
6,912	+		MPMX19_05336	0.42	+0.1
6,912	+		MPMX19_05336	0.42	+0.4
6,912	+		MPMX19_05336	0.42	+1.1
6,912	+		MPMX19_05336	0.42	-2.0
6,913	-		MPMX19_05336	0.42	-0.8
6,913	-		MPMX19_05336	0.42	-0.9
6,913	-		MPMX19_05336	0.42	-0.1
7,367	+		MPMX19_05336	0.58	-0.9
7,368	-		MPMX19_05336	0.58	-2.5
7,368	-		MPMX19_05336	0.58	-0.9
7,473	+		MPMX19_05336	0.61	+0.7
7,473	+		MPMX19_05336	0.61	+0.8
7,473	+		MPMX19_05336	0.61	-0.2
7,473	+		MPMX19_05336	0.61	-1.0
7,474	-		MPMX19_05336	0.61	+0.6
7,474	-		MPMX19_05336	0.61	-1.0
7,474	-		MPMX19_05336	0.61	-0.3
7,474	-		MPMX19_05336	0.61	-0.5
7,641	+		MPMX19_05336	0.67	-1.2
7,641	+		MPMX19_05336	0.67	-0.3
7,641	+		MPMX19_05336	0.67	-0.2
7,641	+		MPMX19_05336	0.67	+0.3
7,641	+		MPMX19_05336	0.67	-0.5
7,641	+		MPMX19_05336	0.67	+0.5
7,641	+		MPMX19_05336	0.67	+1.1
7,641	+		MPMX19_05336	0.67	-1.2
7,641	+		MPMX19_05336	0.67	-0.3
7,642	-		MPMX19_05336	0.67	+0.4
7,642	-		MPMX19_05336	0.67	-1.0
7,642	-		MPMX19_05336	0.67	-0.6
7,642	-		MPMX19_05336	0.67	-0.5
7,642	-		MPMX19_05336	0.67	-0.9
7,854	+		MPMX19_05336	0.75	-0.2
7,854	+		MPMX19_05336	0.75	-1.0
7,854	+		MPMX19_05336	0.75	-0.5
7,854	+		MPMX19_05336	0.75	-0.3
7,855	-		MPMX19_05336	0.75	+0.2
7,855	-		MPMX19_05336	0.75	-0.4
7,855	-		MPMX19_05336	0.75	-2.2
7,954	-		MPMX19_05336	0.78	+0.1
7,954	-		MPMX19_05336	0.78	-1.2
8,085	+		MPMX19_05336	0.83	-0.3
8,085	+		MPMX19_05336	0.83	+1.1
8,085	+		MPMX19_05336	0.83	-1.3
8,085	+		MPMX19_05336	0.83	+0.1
8,085	+		MPMX19_05336	0.83	-0.7
8,085	+		MPMX19_05336	0.83	+0.1
8,085	+		MPMX19_05336	0.83	-1.7
8,085	+		MPMX19_05336	0.83	-0.1
8,085	+		MPMX19_05336	0.83	-0.5
8,085	+		MPMX19_05336	0.83	-0.3
8,086	-		MPMX19_05336	0.83	-1.0
8,086	-		MPMX19_05336	0.83	-0.2
8,086	-		MPMX19_05336	0.83	+0.2
8,086	-		MPMX19_05336	0.83	-0.9
8,086	-		MPMX19_05336	0.83	-1.5
8,086	-		MPMX19_05336	0.83	+0.3
8,086	-		MPMX19_05336	0.83	+0.3
8,086	-		MPMX19_05336	0.83	-0.6
8,136	+		MPMX19_05336	0.85	-0.6
8,136	+		MPMX19_05336	0.85	+0.3
8,136	+		MPMX19_05336	0.85	-0.6
8,136	+		MPMX19_05336	0.85	-1.7
8,136	+		MPMX19_05336	0.85	-0.9
8,136	+		MPMX19_05336	0.85	+0.1
8,136	+		MPMX19_05336	0.85	-1.5
8,136	+		MPMX19_05336	0.85	+0.0
8,136	+		MPMX19_05336	0.85	-0.2
8,136	+		MPMX19_05336	0.85	-0.0
8,136	+		MPMX19_05336	0.85	+0.0
8,137	-		MPMX19_05336	0.85	+0.3
8,137	-		MPMX19_05336	0.85	-0.2
8,137	-		MPMX19_05336	0.85	+0.1
8,137	-		MPMX19_05336	0.85	+0.0
8,137	-		MPMX19_05336	0.85	+1.1
8,137	-		MPMX19_05336	0.85	+0.5
8,137	-		MPMX19_05336	0.85	-1.4
8,137	-		MPMX19_05336	0.85	-0.3
8,137	-		MPMX19_05336	0.85	-1.4
8,247	+		MPMX19_05336	0.89	-0.5
8,247	+		MPMX19_05336	0.89	+0.1
8,247	+		MPMX19_05336	0.89	+0.4
8,247	+		MPMX19_05336	0.89	-0.5
8,247	+		MPMX19_05336	0.89	-1.5
8,247	+		MPMX19_05336	0.89	-1.1
8,247	+		MPMX19_05336	0.89	+0.1
8,247	+		MPMX19_05336	0.89	+0.4
8,247	+		MPMX19_05336	0.89	+0.5
8,247	+		MPMX19_05336	0.89	+0.4
8,247	+		MPMX19_05336	0.89	-0.3
8,247	+		MPMX19_05336	0.89	-1.5
8,247	+		MPMX19_05336	0.89	-1.2
8,247	+		MPMX19_05336	0.89	-0.2
8,247	+		MPMX19_05336	0.89	-0.9
8,247	+		MPMX19_05336	0.89	+1.3
8,247	+		MPMX19_05336	0.89	+0.8
8,247	+		MPMX19_05336	0.89	+0.2
8,247	+		MPMX19_05336	0.89	+1.9
8,248	-		MPMX19_05336	0.89	+0.2
8,248	-		MPMX19_05336	0.89	-0.1
8,248	-		MPMX19_05336	0.89	-1.4
8,248	-		MPMX19_05336	0.89	+1.8
8,248	-		MPMX19_05336	0.89	-0.9
8,248	-		MPMX19_05336	0.89	+0.5
8,248	-		MPMX19_05336	0.89	-0.9
8,248	-		MPMX19_05336	0.89	-0.4
8,248	-		MPMX19_05336	0.89	-1.0
8,248	-		MPMX19_05336	0.89	-0.7
8,248	-		MPMX19_05336	0.89	+0.1
8,248	-		MPMX19_05336	0.89	-1.2
8,248	-		MPMX19_05336	0.89	-0.3
8,248	-		MPMX19_05336	0.89	-0.0
8,248	-		MPMX19_05336	0.89	-2.1
8,248	-		MPMX19_05336	0.89	-0.0
8,248	-		MPMX19_05336	0.89	-0.8
8,248	-		MPMX19_05336	0.89	-1.3
8,248	-		MPMX19_05336	0.89	+0.5
8,248	-		MPMX19_05336	0.89	-0.7
8,248	-		MPMX19_05336	0.89	-0.8
8,664	+				+0.3
8,664	+				-0.3
8,664	+				+0.1
8,664	+				-1.5
8,665	-				-0.8
8,665	-				-1.0
8,665	-				+0.5
8,665	-				-1.1
8,665	-				-0.1
8,665	-				-0.5
8,665	-				+0.5
8,685	+				-0.5
8,685	+				-0.5
8,685	+				-2.0
8,859	+		MPMX19_05337	0.25	+0.3
8,859	+		MPMX19_05337	0.25	+0.7
8,860	-		MPMX19_05337	0.25	-0.1
8,860	-		MPMX19_05337	0.25	-0.9
8,860	-		MPMX19_05337	0.25	+0.9
8,860	-		MPMX19_05337	0.25	-0.5
8,860	-		MPMX19_05337	0.25	+0.0
9,075	+		MPMX19_05337	0.44	-1.5
9,075	+		MPMX19_05337	0.44	+0.9
9,075	+		MPMX19_05337	0.44	+0.1
9,075	+		MPMX19_05337	0.44	-0.2
9,076	-		MPMX19_05337	0.45	-0.3
9,076	-		MPMX19_05337	0.45	-1.6
9,092	+		MPMX19_05337	0.46	-0.5
9,093	-		MPMX19_05337	0.46	-1.2
9,297	+		MPMX19_05337	0.64	-1.8
9,297	+		MPMX19_05337	0.64	+0.3
9,297	+		MPMX19_05337	0.64	-0.3
9,297	+		MPMX19_05337	0.64	-1.0
9,297	+		MPMX19_05337	0.64	-1.5
9,297	+		MPMX19_05337	0.64	-0.8
9,297	+		MPMX19_05337	0.64	-2.0
9,297	+		MPMX19_05337	0.64	+0.7
9,297	+		MPMX19_05337	0.64	+0.5
9,297	+		MPMX19_05337	0.64	+0.8
9,297	+		MPMX19_05337	0.64	+1.1
9,297	+		MPMX19_05337	0.64	-1.2
9,298	-		MPMX19_05337	0.64	+0.1
9,298	-		MPMX19_05337	0.64	-1.0
9,298	-		MPMX19_05337	0.64	+0.0
9,298	-		MPMX19_05337	0.64	-1.6
9,298	-		MPMX19_05337	0.64	-1.3
9,298	-		MPMX19_05337	0.64	+0.3
9,298	-		MPMX19_05337	0.64	-2.1
9,298	-		MPMX19_05337	0.64	-1.2
9,298	-		MPMX19_05337	0.64	-0.6
9,298	-		MPMX19_05337	0.64	-0.7
9,298	-		MPMX19_05337	0.64	-0.4
9,298	-		MPMX19_05337	0.64	-1.2
9,372	+		MPMX19_05337	0.71	-0.2
9,372	+		MPMX19_05337	0.71	-0.4
9,372	+		MPMX19_05337	0.71	-0.5
9,373	-		MPMX19_05337	0.71	+0.0
9,373	-		MPMX19_05337	0.71	-1.8
9,373	-		MPMX19_05337	0.71	+1.7
9,373	-		MPMX19_05337	0.71	-1.2
9,373	-		MPMX19_05337	0.71	-0.6
9,373	-		MPMX19_05337	0.71	-0.5
9,373	-		MPMX19_05337	0.71	-2.3