Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05325

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05324 and MPMX19_05325 are separated by 48 nucleotidesMPMX19_05325 and MPMX19_05326 are separated by 84 nucleotides MPMX19_05324: MPMX19_05324 - hypothetical protein, at 864,964 to 866,112 _05324 MPMX19_05325: MPMX19_05325 - S-formylglutathione hydrolase YeiG, at 866,161 to 867,012 _05325 MPMX19_05326: MPMX19_05326 - S-(hydroxymethyl)glutathione dehydrogenase, at 867,097 to 868,215 _05326 Position (kb) 866 867 868Strain fitness (log2 ratio) -2 -1 0 1 2at 865.361 kb on - strand, within MPMX19_05324at 865.432 kb on + strand, within MPMX19_05324at 865.432 kb on + strand, within MPMX19_05324at 865.432 kb on + strand, within MPMX19_05324at 865.432 kb on + strand, within MPMX19_05324at 865.432 kb on + strand, within MPMX19_05324at 865.433 kb on - strand, within MPMX19_05324at 865.433 kb on - strand, within MPMX19_05324at 865.433 kb on - strand, within MPMX19_05324at 865.450 kb on + strand, within MPMX19_05324at 865.450 kb on + strand, within MPMX19_05324at 865.450 kb on + strand, within MPMX19_05324at 865.451 kb on - strand, within MPMX19_05324at 865.451 kb on - strand, within MPMX19_05324at 865.451 kb on - strand, within MPMX19_05324at 865.451 kb on - strand, within MPMX19_05324at 865.612 kb on + strand, within MPMX19_05324at 865.612 kb on + strand, within MPMX19_05324at 865.612 kb on + strand, within MPMX19_05324at 865.612 kb on + strand, within MPMX19_05324at 865.612 kb on + strand, within MPMX19_05324at 865.612 kb on + strand, within MPMX19_05324at 865.613 kb on - strand, within MPMX19_05324at 865.613 kb on - strand, within MPMX19_05324at 865.613 kb on - strand, within MPMX19_05324at 865.613 kb on - strand, within MPMX19_05324at 865.613 kb on - strand, within MPMX19_05324at 865.613 kb on - strand, within MPMX19_05324at 865.613 kb on - strand, within MPMX19_05324at 865.613 kb on - strand, within MPMX19_05324at 865.613 kb on - strand, within MPMX19_05324at 865.613 kb on - strand, within MPMX19_05324at 865.613 kb on - strand, within MPMX19_05324at 865.843 kb on + strand, within MPMX19_05324at 865.843 kb on + strand, within MPMX19_05324at 865.843 kb on + strand, within MPMX19_05324at 865.843 kb on + strand, within MPMX19_05324at 865.843 kb on + strand, within MPMX19_05324at 865.843 kb on + strand, within MPMX19_05324at 865.843 kb on + strand, within MPMX19_05324at 865.843 kb on + strand, within MPMX19_05324at 865.844 kb on - strand, within MPMX19_05324at 865.844 kb on - strand, within MPMX19_05324at 865.844 kb on - strand, within MPMX19_05324at 865.844 kb on - strand, within MPMX19_05324at 865.844 kb on - strand, within MPMX19_05324at 865.844 kb on - strand, within MPMX19_05324at 865.844 kb on - strand, within MPMX19_05324at 865.845 kb on + strand, within MPMX19_05324at 865.846 kb on - strand, within MPMX19_05324at 865.846 kb on - strand, within MPMX19_05324at 865.846 kb on - strand, within MPMX19_05324at 865.846 kb on - strand, within MPMX19_05324at 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.226 kb on - strandat 866.226 kb on - strandat 866.226 kb on - strandat 866.226 kb on - strandat 866.226 kb on - strandat 866.226 kb on - strandat 866.226 kb on - strandat 866.226 kb on - strandat 866.226 kb on - strandat 866.226 kb on - strandat 866.226 kb on - strandat 866.226 kb on - strandat 866.226 kb on - strandat 866.237 kb on + strandat 866.237 kb on + strandat 866.237 kb on + strandat 866.238 kb on - strandat 866.432 kb on + strand, within MPMX19_05325at 866.507 kb on + strand, within MPMX19_05325at 866.507 kb on + strand, within MPMX19_05325at 866.507 kb on + strand, within MPMX19_05325at 866.508 kb on - strand, within MPMX19_05325at 866.508 kb on - strand, within MPMX19_05325at 866.508 kb on - strand, within MPMX19_05325at 866.508 kb on - strand, within MPMX19_05325at 866.595 kb on - strand, within MPMX19_05325at 866.633 kb on + strand, within MPMX19_05325at 866.633 kb on + strand, within MPMX19_05325at 866.633 kb on + strand, within MPMX19_05325at 866.633 kb on + strand, within MPMX19_05325at 866.633 kb on + strand, within MPMX19_05325at 866.634 kb on - strand, within MPMX19_05325at 866.634 kb on - strand, within MPMX19_05325at 866.634 kb on - strand, within MPMX19_05325at 866.634 kb on - strand, within MPMX19_05325at 866.634 kb on - strand, within MPMX19_05325at 866.634 kb on - strand, within MPMX19_05325at 866.684 kb on + strand, within MPMX19_05325at 866.684 kb on + strand, within MPMX19_05325at 866.684 kb on + strand, within MPMX19_05325at 866.685 kb on - strand, within MPMX19_05325at 866.858 kb on + strand, within MPMX19_05325at 866.858 kb on + strand, within MPMX19_05325at 866.858 kb on + strand, within MPMX19_05325at 866.858 kb on + strand, within MPMX19_05325at 866.859 kb on - strand, within MPMX19_05325at 866.859 kb on - strand, within MPMX19_05325at 866.859 kb on - strand, within MPMX19_05325at 866.859 kb on - strand, within MPMX19_05325at 866.859 kb on - strand, within MPMX19_05325at 866.859 kb on - strand, within MPMX19_05325at 866.859 kb on - strand, within MPMX19_05325at 866.859 kb on - strand, within MPMX19_05325at 866.859 kb on - strand, within MPMX19_05325at 866.859 kb on - strand, within MPMX19_05325at 866.861 kb on - strand, within MPMX19_05325at 867.107 kb on + strandat 867.107 kb on + strandat 867.107 kb on + strandat 867.107 kb on + strandat 867.108 kb on - strandat 867.108 kb on - strandat 867.108 kb on - strandat 867.108 kb on - strandat 867.108 kb on - strandat 867.108 kb on - strandat 867.198 kb on + strandat 867.198 kb on + strandat 867.199 kb on - strandat 867.224 kb on + strand, within MPMX19_05326at 867.225 kb on - strand, within MPMX19_05326at 867.225 kb on - strand, within MPMX19_05326at 867.236 kb on + strand, within MPMX19_05326at 867.236 kb on + strand, within MPMX19_05326at 867.236 kb on + strand, within MPMX19_05326at 867.236 kb on + strand, within MPMX19_05326at 867.236 kb on + strand, within MPMX19_05326at 867.236 kb on + strand, within MPMX19_05326at 867.236 kb on + strand, within MPMX19_05326at 867.236 kb on + strand, within MPMX19_05326at 867.236 kb on + strand, within MPMX19_05326at 867.236 kb on + strand, within MPMX19_05326at 867.237 kb on - strand, within MPMX19_05326at 867.237 kb on - strand, within MPMX19_05326at 867.237 kb on - strand, within MPMX19_05326at 867.237 kb on - strand, within MPMX19_05326at 867.237 kb on - strand, within MPMX19_05326at 867.237 kb on - strand, within MPMX19_05326at 867.237 kb on - strand, within MPMX19_05326at 867.237 kb on - strand, within MPMX19_05326at 867.437 kb on + strand, within MPMX19_05326at 867.437 kb on + strand, within MPMX19_05326at 867.437 kb on + strand, within MPMX19_05326at 867.437 kb on + strand, within MPMX19_05326at 867.437 kb on + strand, within MPMX19_05326at 867.438 kb on - strand, within MPMX19_05326at 867.438 kb on - strand, within MPMX19_05326at 867.438 kb on - strand, within MPMX19_05326at 867.438 kb on - strand, within MPMX19_05326at 867.700 kb on - strand, within MPMX19_05326at 867.782 kb on + strand, within MPMX19_05326at 867.783 kb on - strand, within MPMX19_05326at 867.783 kb on - strand, within MPMX19_05326at 867.809 kb on + strand, within MPMX19_05326at 867.809 kb on + strand, within MPMX19_05326at 867.809 kb on + strand, within MPMX19_05326at 867.809 kb on + strand, within MPMX19_05326at 867.809 kb on + strand, within MPMX19_05326at 867.809 kb on + strand, within MPMX19_05326at 867.809 kb on + strand, within MPMX19_05326at 867.809 kb on + strand, within MPMX19_05326at 867.810 kb on - strand, within MPMX19_05326at 867.810 kb on - strand, within MPMX19_05326at 867.810 kb on - strand, within MPMX19_05326at 867.810 kb on - strand, within MPMX19_05326at 867.810 kb on - strand, within MPMX19_05326at 867.810 kb on - strand, within MPMX19_05326at 867.810 kb on - strand, within MPMX19_05326at 867.810 kb on - strand, within MPMX19_05326at 867.810 kb on - strand, within MPMX19_05326at 867.810 kb on - strand, within MPMX19_05326at 867.950 kb on + strand, within MPMX19_05326at 867.950 kb on + strand, within MPMX19_05326at 867.950 kb on + strand, within MPMX19_05326at 867.950 kb on + strand, within MPMX19_05326at 867.951 kb on - strand, within MPMX19_05326at 867.951 kb on - strand, within MPMX19_05326

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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865,361 - MPMX19_05324 0.35 -0.4
865,432 + MPMX19_05324 0.41 +0.3
865,432 + MPMX19_05324 0.41 +0.3
865,432 + MPMX19_05324 0.41 +2.5
865,432 + MPMX19_05324 0.41 +0.5
865,432 + MPMX19_05324 0.41 +0.0
865,433 - MPMX19_05324 0.41 +0.3
865,433 - MPMX19_05324 0.41 -0.3
865,433 - MPMX19_05324 0.41 -1.0
865,450 + MPMX19_05324 0.42 +0.8
865,450 + MPMX19_05324 0.42 -0.1
865,450 + MPMX19_05324 0.42 -0.3
865,451 - MPMX19_05324 0.42 -1.0
865,451 - MPMX19_05324 0.42 +0.0
865,451 - MPMX19_05324 0.42 -0.1
865,451 - MPMX19_05324 0.42 +0.7
865,612 + MPMX19_05324 0.56 -1.4
865,612 + MPMX19_05324 0.56 -0.1
865,612 + MPMX19_05324 0.56 +1.0
865,612 + MPMX19_05324 0.56 +0.4
865,612 + MPMX19_05324 0.56 -0.1
865,612 + MPMX19_05324 0.56 -0.8
865,613 - MPMX19_05324 0.56 -1.1
865,613 - MPMX19_05324 0.56 +1.4
865,613 - MPMX19_05324 0.56 +0.8
865,613 - MPMX19_05324 0.56 +0.4
865,613 - MPMX19_05324 0.56 +0.4
865,613 - MPMX19_05324 0.56 +0.0
865,613 - MPMX19_05324 0.56 -1.0
865,613 - MPMX19_05324 0.56 +0.2
865,613 - MPMX19_05324 0.56 +0.8
865,613 - MPMX19_05324 0.56 +0.3
865,613 - MPMX19_05324 0.56 +0.4
865,843 + MPMX19_05324 0.77 +0.8
865,843 + MPMX19_05324 0.77 -0.3
865,843 + MPMX19_05324 0.77 +0.7
865,843 + MPMX19_05324 0.77 -1.3
865,843 + MPMX19_05324 0.77 +0.6
865,843 + MPMX19_05324 0.77 +0.2
865,843 + MPMX19_05324 0.77 -1.1
865,843 + MPMX19_05324 0.77 +0.4
865,844 - MPMX19_05324 0.77 +0.2
865,844 - MPMX19_05324 0.77 +0.2
865,844 - MPMX19_05324 0.77 +0.4
865,844 - MPMX19_05324 0.77 -0.1
865,844 - MPMX19_05324 0.77 +1.3
865,844 - MPMX19_05324 0.77 -1.3
865,844 - MPMX19_05324 0.77 -0.4
865,845 + MPMX19_05324 0.77 -0.6
865,846 - MPMX19_05324 0.77 +0.0
865,846 - MPMX19_05324 0.77 -1.4
865,846 - MPMX19_05324 0.77 -0.8
865,846 - MPMX19_05324 0.77 -1.0
866,225 + +0.9
866,225 + -0.6
866,225 + -0.5
866,225 + +0.1
866,225 + -1.3
866,225 + -1.4
866,225 + +1.2
866,225 + +0.0
866,225 + -0.5
866,225 + +0.4
866,225 + -0.4
866,225 + +1.0
866,225 + +1.0
866,225 + -0.8
866,225 + +0.2
866,225 + -0.1
866,225 + -1.1
866,225 + +0.1
866,225 + -1.3
866,225 + +0.8
866,226 - -0.6
866,226 - -1.9
866,226 - +0.2
866,226 - -0.1
866,226 - -0.7
866,226 - -0.4
866,226 - -0.7
866,226 - -1.0
866,226 - -0.8
866,226 - +0.4
866,226 - -1.4
866,226 - -1.3
866,226 - -0.3
866,237 + -1.7
866,237 + +0.2
866,237 + -0.6
866,238 - -1.1
866,432 + MPMX19_05325 0.32 -0.4
866,507 + MPMX19_05325 0.41 +0.2
866,507 + MPMX19_05325 0.41 +0.2
866,507 + MPMX19_05325 0.41 -0.2
866,508 - MPMX19_05325 0.41 -0.4
866,508 - MPMX19_05325 0.41 -0.6
866,508 - MPMX19_05325 0.41 -0.6
866,508 - MPMX19_05325 0.41 -0.8
866,595 - MPMX19_05325 0.51 -1.4
866,633 + MPMX19_05325 0.55 +0.7
866,633 + MPMX19_05325 0.55 +0.4
866,633 + MPMX19_05325 0.55 +0.2
866,633 + MPMX19_05325 0.55 -0.4
866,633 + MPMX19_05325 0.55 -0.1
866,634 - MPMX19_05325 0.56 -1.1
866,634 - MPMX19_05325 0.56 +1.5
866,634 - MPMX19_05325 0.56 +0.1
866,634 - MPMX19_05325 0.56 -2.7
866,634 - MPMX19_05325 0.56 -1.8
866,634 - MPMX19_05325 0.56 -0.5
866,684 + MPMX19_05325 0.61 -0.4
866,684 + MPMX19_05325 0.61 -0.1
866,684 + MPMX19_05325 0.61 -0.6
866,685 - MPMX19_05325 0.62 -0.6
866,858 + MPMX19_05325 0.82 -1.0
866,858 + MPMX19_05325 0.82 -0.6
866,858 + MPMX19_05325 0.82 +0.7
866,858 + MPMX19_05325 0.82 -0.6
866,859 - MPMX19_05325 0.82 +1.1
866,859 - MPMX19_05325 0.82 -1.4
866,859 - MPMX19_05325 0.82 -0.4
866,859 - MPMX19_05325 0.82 +0.9
866,859 - MPMX19_05325 0.82 -1.4
866,859 - MPMX19_05325 0.82 -0.7
866,859 - MPMX19_05325 0.82 -1.6
866,859 - MPMX19_05325 0.82 +0.4
866,859 - MPMX19_05325 0.82 -0.6
866,859 - MPMX19_05325 0.82 -1.7
866,861 - MPMX19_05325 0.82 -0.4
867,107 + -0.8
867,107 + -0.1
867,107 + -0.5
867,107 + -2.2
867,108 - -2.6
867,108 - -0.9
867,108 - -0.7
867,108 - -0.5
867,108 - -1.9
867,108 - -0.2
867,198 + +1.2
867,198 + +0.8
867,199 - +0.0
867,224 + MPMX19_05326 0.11 +0.0
867,225 - MPMX19_05326 0.11 -0.8
867,225 - MPMX19_05326 0.11 +0.1
867,236 + MPMX19_05326 0.12 -2.7
867,236 + MPMX19_05326 0.12 +0.0
867,236 + MPMX19_05326 0.12 +0.6
867,236 + MPMX19_05326 0.12 -1.4
867,236 + MPMX19_05326 0.12 +0.4
867,236 + MPMX19_05326 0.12 +0.3
867,236 + MPMX19_05326 0.12 +2.0
867,236 + MPMX19_05326 0.12 -0.6
867,236 + MPMX19_05326 0.12 -0.3
867,236 + MPMX19_05326 0.12 -1.1
867,237 - MPMX19_05326 0.13 -0.6
867,237 - MPMX19_05326 0.13 -0.5
867,237 - MPMX19_05326 0.13 -0.7
867,237 - MPMX19_05326 0.13 -0.4
867,237 - MPMX19_05326 0.13 -0.1
867,237 - MPMX19_05326 0.13 -0.1
867,237 - MPMX19_05326 0.13 +0.9
867,237 - MPMX19_05326 0.13 -1.1
867,437 + MPMX19_05326 0.30 -0.3
867,437 + MPMX19_05326 0.30 +1.5
867,437 + MPMX19_05326 0.30 -0.1
867,437 + MPMX19_05326 0.30 -0.3
867,437 + MPMX19_05326 0.30 -0.4
867,438 - MPMX19_05326 0.30 -2.1
867,438 - MPMX19_05326 0.30 +0.3
867,438 - MPMX19_05326 0.30 -0.2
867,438 - MPMX19_05326 0.30 -1.7
867,700 - MPMX19_05326 0.54 -2.1
867,782 + MPMX19_05326 0.61 -0.3
867,783 - MPMX19_05326 0.61 +0.0
867,783 - MPMX19_05326 0.61 -1.1
867,809 + MPMX19_05326 0.64 +1.0
867,809 + MPMX19_05326 0.64 -1.8
867,809 + MPMX19_05326 0.64 -1.1
867,809 + MPMX19_05326 0.64 -0.8
867,809 + MPMX19_05326 0.64 -0.8
867,809 + MPMX19_05326 0.64 +0.0
867,809 + MPMX19_05326 0.64 +0.3
867,809 + MPMX19_05326 0.64 +0.5
867,810 - MPMX19_05326 0.64 -0.4
867,810 - MPMX19_05326 0.64 -0.6
867,810 - MPMX19_05326 0.64 +0.1
867,810 - MPMX19_05326 0.64 -2.4
867,810 - MPMX19_05326 0.64 +0.9
867,810 - MPMX19_05326 0.64 +1.4
867,810 - MPMX19_05326 0.64 -1.2
867,810 - MPMX19_05326 0.64 +0.4
867,810 - MPMX19_05326 0.64 -0.9
867,810 - MPMX19_05326 0.64 +0.0
867,950 + MPMX19_05326 0.76 +0.5
867,950 + MPMX19_05326 0.76 -1.3
867,950 + MPMX19_05326 0.76 +0.1
867,950 + MPMX19_05326 0.76 +1.3
867,951 - MPMX19_05326 0.76 +1.0
867,951 - MPMX19_05326 0.76 -0.3

Or see this region's nucleotide sequence