Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05324

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05323 and MPMX19_05324 are separated by 2 nucleotidesMPMX19_05324 and MPMX19_05325 are separated by 48 nucleotidesMPMX19_05325 and MPMX19_05326 are separated by 84 nucleotides MPMX19_05323: MPMX19_05323 - hypothetical protein, at 863,846 to 864,961 _05323 MPMX19_05324: MPMX19_05324 - hypothetical protein, at 864,964 to 866,112 _05324 MPMX19_05325: MPMX19_05325 - S-formylglutathione hydrolase YeiG, at 866,161 to 867,012 _05325 MPMX19_05326: MPMX19_05326 - S-(hydroxymethyl)glutathione dehydrogenase, at 867,097 to 868,215 _05326 Position (kb) 864 865 866 867Strain fitness (log2 ratio) -2 -1 0 1 2at 864.023 kb on + strand, within MPMX19_05323at 864.024 kb on - strand, within MPMX19_05323at 864.024 kb on - strand, within MPMX19_05323at 864.032 kb on - strand, within MPMX19_05323at 864.371 kb on + strand, within MPMX19_05323at 864.371 kb on + strand, within MPMX19_05323at 864.372 kb on - strand, within MPMX19_05323at 864.521 kb on + strand, within MPMX19_05323at 864.521 kb on + strand, within MPMX19_05323at 864.521 kb on + strand, within MPMX19_05323at 864.521 kb on + strand, within MPMX19_05323at 864.521 kb on + strand, within MPMX19_05323at 864.521 kb on + strand, within MPMX19_05323at 864.521 kb on + strand, within MPMX19_05323at 864.521 kb on + strand, within MPMX19_05323at 864.521 kb on + strand, within MPMX19_05323at 864.521 kb on + strand, within MPMX19_05323at 864.521 kb on + strand, within MPMX19_05323at 864.521 kb on + strand, within MPMX19_05323at 864.521 kb on + strand, within MPMX19_05323at 864.521 kb on + strand, within MPMX19_05323at 864.521 kb on + strand, within MPMX19_05323at 864.521 kb on + strand, within MPMX19_05323at 864.521 kb on + strand, within MPMX19_05323at 864.522 kb on - strand, within MPMX19_05323at 864.522 kb on - strand, within MPMX19_05323at 864.522 kb on - strand, within MPMX19_05323at 864.522 kb on - strand, within MPMX19_05323at 864.522 kb on - strand, within MPMX19_05323at 864.522 kb on - strand, within MPMX19_05323at 865.105 kb on + strand, within MPMX19_05324at 865.105 kb on + strand, within MPMX19_05324at 865.105 kb on + strand, within MPMX19_05324at 865.106 kb on - strand, within MPMX19_05324at 865.106 kb on - strand, within MPMX19_05324at 865.106 kb on - strand, within MPMX19_05324at 865.117 kb on + strand, within MPMX19_05324at 865.117 kb on + strand, within MPMX19_05324at 865.117 kb on + strand, within MPMX19_05324at 865.117 kb on + strand, within MPMX19_05324at 865.117 kb on + strand, within MPMX19_05324at 865.118 kb on - strand, within MPMX19_05324at 865.118 kb on - strand, within MPMX19_05324at 865.118 kb on - strand, within MPMX19_05324at 865.118 kb on - strand, within MPMX19_05324at 865.118 kb on - strand, within MPMX19_05324at 865.361 kb on - strand, within MPMX19_05324at 865.432 kb on + strand, within MPMX19_05324at 865.432 kb on + strand, within MPMX19_05324at 865.432 kb on + strand, within MPMX19_05324at 865.432 kb on + strand, within MPMX19_05324at 865.432 kb on + strand, within MPMX19_05324at 865.433 kb on - strand, within MPMX19_05324at 865.433 kb on - strand, within MPMX19_05324at 865.433 kb on - strand, within MPMX19_05324at 865.450 kb on + strand, within MPMX19_05324at 865.450 kb on + strand, within MPMX19_05324at 865.450 kb on + strand, within MPMX19_05324at 865.451 kb on - strand, within MPMX19_05324at 865.451 kb on - strand, within MPMX19_05324at 865.451 kb on - strand, within MPMX19_05324at 865.451 kb on - strand, within MPMX19_05324at 865.612 kb on + strand, within MPMX19_05324at 865.612 kb on + strand, within MPMX19_05324at 865.612 kb on + strand, within MPMX19_05324at 865.612 kb on + strand, within MPMX19_05324at 865.612 kb on + strand, within MPMX19_05324at 865.612 kb on + strand, within MPMX19_05324at 865.613 kb on - strand, within MPMX19_05324at 865.613 kb on - strand, within MPMX19_05324at 865.613 kb on - strand, within MPMX19_05324at 865.613 kb on - strand, within MPMX19_05324at 865.613 kb on - strand, within MPMX19_05324at 865.613 kb on - strand, within MPMX19_05324at 865.613 kb on - strand, within MPMX19_05324at 865.613 kb on - strand, within MPMX19_05324at 865.613 kb on - strand, within MPMX19_05324at 865.613 kb on - strand, within MPMX19_05324at 865.613 kb on - strand, within MPMX19_05324at 865.843 kb on + strand, within MPMX19_05324at 865.843 kb on + strand, within MPMX19_05324at 865.843 kb on + strand, within MPMX19_05324at 865.843 kb on + strand, within MPMX19_05324at 865.843 kb on + strand, within MPMX19_05324at 865.843 kb on + strand, within MPMX19_05324at 865.843 kb on + strand, within MPMX19_05324at 865.843 kb on + strand, within MPMX19_05324at 865.844 kb on - strand, within MPMX19_05324at 865.844 kb on - strand, within MPMX19_05324at 865.844 kb on - strand, within MPMX19_05324at 865.844 kb on - strand, within MPMX19_05324at 865.844 kb on - strand, within MPMX19_05324at 865.844 kb on - strand, within MPMX19_05324at 865.844 kb on - strand, within MPMX19_05324at 865.845 kb on + strand, within MPMX19_05324at 865.846 kb on - strand, within MPMX19_05324at 865.846 kb on - strand, within MPMX19_05324at 865.846 kb on - strand, within MPMX19_05324at 865.846 kb on - strand, within MPMX19_05324at 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.226 kb on - strandat 866.226 kb on - strandat 866.226 kb on - strandat 866.226 kb on - strandat 866.226 kb on - strandat 866.226 kb on - strandat 866.226 kb on - strandat 866.226 kb on - strandat 866.226 kb on - strandat 866.226 kb on - strandat 866.226 kb on - strandat 866.226 kb on - strandat 866.226 kb on - strandat 866.237 kb on + strandat 866.237 kb on + strandat 866.237 kb on + strandat 866.238 kb on - strandat 866.432 kb on + strand, within MPMX19_05325at 866.507 kb on + strand, within MPMX19_05325at 866.507 kb on + strand, within MPMX19_05325at 866.507 kb on + strand, within MPMX19_05325at 866.508 kb on - strand, within MPMX19_05325at 866.508 kb on - strand, within MPMX19_05325at 866.508 kb on - strand, within MPMX19_05325at 866.508 kb on - strand, within MPMX19_05325at 866.595 kb on - strand, within MPMX19_05325at 866.633 kb on + strand, within MPMX19_05325at 866.633 kb on + strand, within MPMX19_05325at 866.633 kb on + strand, within MPMX19_05325at 866.633 kb on + strand, within MPMX19_05325at 866.633 kb on + strand, within MPMX19_05325at 866.634 kb on - strand, within MPMX19_05325at 866.634 kb on - strand, within MPMX19_05325at 866.634 kb on - strand, within MPMX19_05325at 866.634 kb on - strand, within MPMX19_05325at 866.634 kb on - strand, within MPMX19_05325at 866.634 kb on - strand, within MPMX19_05325at 866.684 kb on + strand, within MPMX19_05325at 866.684 kb on + strand, within MPMX19_05325at 866.684 kb on + strand, within MPMX19_05325at 866.685 kb on - strand, within MPMX19_05325at 866.858 kb on + strand, within MPMX19_05325at 866.858 kb on + strand, within MPMX19_05325at 866.858 kb on + strand, within MPMX19_05325at 866.858 kb on + strand, within MPMX19_05325at 866.859 kb on - strand, within MPMX19_05325at 866.859 kb on - strand, within MPMX19_05325at 866.859 kb on - strand, within MPMX19_05325at 866.859 kb on - strand, within MPMX19_05325at 866.859 kb on - strand, within MPMX19_05325at 866.859 kb on - strand, within MPMX19_05325at 866.859 kb on - strand, within MPMX19_05325at 866.859 kb on - strand, within MPMX19_05325at 866.859 kb on - strand, within MPMX19_05325at 866.859 kb on - strand, within MPMX19_05325at 866.861 kb on - strand, within MPMX19_05325at 867.107 kb on + strandat 867.107 kb on + strandat 867.107 kb on + strandat 867.107 kb on + strandat 867.108 kb on - strandat 867.108 kb on - strandat 867.108 kb on - strandat 867.108 kb on - strandat 867.108 kb on - strandat 867.108 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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864,023 + MPMX19_05323 0.16 +0.4
864,024 - MPMX19_05323 0.16 -0.9
864,024 - MPMX19_05323 0.16 -0.6
864,032 - MPMX19_05323 0.17 -0.2
864,371 + MPMX19_05323 0.47 -0.1
864,371 + MPMX19_05323 0.47 -0.9
864,372 - MPMX19_05323 0.47 +0.0
864,521 + MPMX19_05323 0.60 -0.8
864,521 + MPMX19_05323 0.60 -0.2
864,521 + MPMX19_05323 0.60 -1.7
864,521 + MPMX19_05323 0.60 +0.7
864,521 + MPMX19_05323 0.60 -1.0
864,521 + MPMX19_05323 0.60 -0.2
864,521 + MPMX19_05323 0.60 +0.4
864,521 + MPMX19_05323 0.60 +0.4
864,521 + MPMX19_05323 0.60 +0.3
864,521 + MPMX19_05323 0.60 -1.3
864,521 + MPMX19_05323 0.60 -1.3
864,521 + MPMX19_05323 0.60 -0.1
864,521 + MPMX19_05323 0.60 +1.2
864,521 + MPMX19_05323 0.60 +0.8
864,521 + MPMX19_05323 0.60 +2.0
864,521 + MPMX19_05323 0.60 +0.6
864,521 + MPMX19_05323 0.60 +0.5
864,522 - MPMX19_05323 0.61 -0.8
864,522 - MPMX19_05323 0.61 -0.3
864,522 - MPMX19_05323 0.61 +0.0
864,522 - MPMX19_05323 0.61 -1.9
864,522 - MPMX19_05323 0.61 -0.3
864,522 - MPMX19_05323 0.61 -0.1
865,105 + MPMX19_05324 0.12 -1.0
865,105 + MPMX19_05324 0.12 -0.0
865,105 + MPMX19_05324 0.12 +0.2
865,106 - MPMX19_05324 0.12 -0.8
865,106 - MPMX19_05324 0.12 +0.8
865,106 - MPMX19_05324 0.12 +0.9
865,117 + MPMX19_05324 0.13 -1.1
865,117 + MPMX19_05324 0.13 +1.2
865,117 + MPMX19_05324 0.13 -0.6
865,117 + MPMX19_05324 0.13 +0.1
865,117 + MPMX19_05324 0.13 +0.7
865,118 - MPMX19_05324 0.13 +1.0
865,118 - MPMX19_05324 0.13 +0.0
865,118 - MPMX19_05324 0.13 +0.4
865,118 - MPMX19_05324 0.13 -0.7
865,118 - MPMX19_05324 0.13 +0.8
865,361 - MPMX19_05324 0.35 -0.4
865,432 + MPMX19_05324 0.41 +0.3
865,432 + MPMX19_05324 0.41 +0.3
865,432 + MPMX19_05324 0.41 +2.5
865,432 + MPMX19_05324 0.41 +0.5
865,432 + MPMX19_05324 0.41 +0.0
865,433 - MPMX19_05324 0.41 +0.3
865,433 - MPMX19_05324 0.41 -0.3
865,433 - MPMX19_05324 0.41 -1.0
865,450 + MPMX19_05324 0.42 +0.8
865,450 + MPMX19_05324 0.42 -0.1
865,450 + MPMX19_05324 0.42 -0.3
865,451 - MPMX19_05324 0.42 -1.0
865,451 - MPMX19_05324 0.42 +0.0
865,451 - MPMX19_05324 0.42 -0.1
865,451 - MPMX19_05324 0.42 +0.7
865,612 + MPMX19_05324 0.56 -1.4
865,612 + MPMX19_05324 0.56 -0.1
865,612 + MPMX19_05324 0.56 +1.0
865,612 + MPMX19_05324 0.56 +0.4
865,612 + MPMX19_05324 0.56 -0.1
865,612 + MPMX19_05324 0.56 -0.8
865,613 - MPMX19_05324 0.56 -1.1
865,613 - MPMX19_05324 0.56 +1.4
865,613 - MPMX19_05324 0.56 +0.8
865,613 - MPMX19_05324 0.56 +0.4
865,613 - MPMX19_05324 0.56 +0.4
865,613 - MPMX19_05324 0.56 +0.0
865,613 - MPMX19_05324 0.56 -1.0
865,613 - MPMX19_05324 0.56 +0.2
865,613 - MPMX19_05324 0.56 +0.8
865,613 - MPMX19_05324 0.56 +0.3
865,613 - MPMX19_05324 0.56 +0.4
865,843 + MPMX19_05324 0.77 +0.8
865,843 + MPMX19_05324 0.77 -0.3
865,843 + MPMX19_05324 0.77 +0.7
865,843 + MPMX19_05324 0.77 -1.3
865,843 + MPMX19_05324 0.77 +0.6
865,843 + MPMX19_05324 0.77 +0.2
865,843 + MPMX19_05324 0.77 -1.1
865,843 + MPMX19_05324 0.77 +0.4
865,844 - MPMX19_05324 0.77 +0.2
865,844 - MPMX19_05324 0.77 +0.2
865,844 - MPMX19_05324 0.77 +0.4
865,844 - MPMX19_05324 0.77 -0.1
865,844 - MPMX19_05324 0.77 +1.3
865,844 - MPMX19_05324 0.77 -1.3
865,844 - MPMX19_05324 0.77 -0.4
865,845 + MPMX19_05324 0.77 -0.6
865,846 - MPMX19_05324 0.77 +0.0
865,846 - MPMX19_05324 0.77 -1.4
865,846 - MPMX19_05324 0.77 -0.8
865,846 - MPMX19_05324 0.77 -1.0
866,225 + +0.9
866,225 + -0.6
866,225 + -0.5
866,225 + +0.1
866,225 + -1.3
866,225 + -1.4
866,225 + +1.2
866,225 + +0.0
866,225 + -0.5
866,225 + +0.4
866,225 + -0.4
866,225 + +1.0
866,225 + +1.0
866,225 + -0.8
866,225 + +0.2
866,225 + -0.1
866,225 + -1.1
866,225 + +0.1
866,225 + -1.3
866,225 + +0.8
866,226 - -0.6
866,226 - -1.9
866,226 - +0.2
866,226 - -0.1
866,226 - -0.7
866,226 - -0.4
866,226 - -0.7
866,226 - -1.0
866,226 - -0.8
866,226 - +0.4
866,226 - -1.4
866,226 - -1.3
866,226 - -0.3
866,237 + -1.7
866,237 + +0.2
866,237 + -0.6
866,238 - -1.1
866,432 + MPMX19_05325 0.32 -0.4
866,507 + MPMX19_05325 0.41 +0.2
866,507 + MPMX19_05325 0.41 +0.2
866,507 + MPMX19_05325 0.41 -0.2
866,508 - MPMX19_05325 0.41 -0.4
866,508 - MPMX19_05325 0.41 -0.6
866,508 - MPMX19_05325 0.41 -0.6
866,508 - MPMX19_05325 0.41 -0.8
866,595 - MPMX19_05325 0.51 -1.4
866,633 + MPMX19_05325 0.55 +0.7
866,633 + MPMX19_05325 0.55 +0.4
866,633 + MPMX19_05325 0.55 +0.2
866,633 + MPMX19_05325 0.55 -0.4
866,633 + MPMX19_05325 0.55 -0.1
866,634 - MPMX19_05325 0.56 -1.1
866,634 - MPMX19_05325 0.56 +1.5
866,634 - MPMX19_05325 0.56 +0.1
866,634 - MPMX19_05325 0.56 -2.7
866,634 - MPMX19_05325 0.56 -1.8
866,634 - MPMX19_05325 0.56 -0.5
866,684 + MPMX19_05325 0.61 -0.4
866,684 + MPMX19_05325 0.61 -0.1
866,684 + MPMX19_05325 0.61 -0.6
866,685 - MPMX19_05325 0.62 -0.6
866,858 + MPMX19_05325 0.82 -1.0
866,858 + MPMX19_05325 0.82 -0.6
866,858 + MPMX19_05325 0.82 +0.7
866,858 + MPMX19_05325 0.82 -0.6
866,859 - MPMX19_05325 0.82 +1.1
866,859 - MPMX19_05325 0.82 -1.4
866,859 - MPMX19_05325 0.82 -0.4
866,859 - MPMX19_05325 0.82 +0.9
866,859 - MPMX19_05325 0.82 -1.4
866,859 - MPMX19_05325 0.82 -0.7
866,859 - MPMX19_05325 0.82 -1.6
866,859 - MPMX19_05325 0.82 +0.4
866,859 - MPMX19_05325 0.82 -0.6
866,859 - MPMX19_05325 0.82 -1.7
866,861 - MPMX19_05325 0.82 -0.4
867,107 + -0.8
867,107 + -0.1
867,107 + -0.5
867,107 + -2.2
867,108 - -2.6
867,108 - -0.9
867,108 - -0.7
867,108 - -0.5
867,108 - -1.9
867,108 - -0.2

Or see this region's nucleotide sequence