Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05317 and MPMX19_05318 are separated by 32 nucleotides MPMX19_05318 and MPMX19_05319 are separated by 86 nucleotides
MPMX19_05317: MPMX19_05317 - hypothetical protein, at 855,625 to 856,986
_05317
MPMX19_05318: MPMX19_05318 - hypothetical protein, at 857,019 to 858,206
_05318
MPMX19_05319: MPMX19_05319 - Cystathionine gamma-synthase, at 858,293 to 859,438
_05319
Position (kb) 857
858
859 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 856.111 kb on + strand, within MPMX19_05317 at 856.111 kb on + strand, within MPMX19_05317 at 856.111 kb on + strand, within MPMX19_05317 at 856.112 kb on - strand, within MPMX19_05317 at 856.112 kb on - strand, within MPMX19_05317 at 856.112 kb on - strand, within MPMX19_05317 at 856.112 kb on - strand, within MPMX19_05317 at 857.094 kb on + strand at 857.094 kb on + strand at 857.094 kb on + strand at 857.095 kb on - strand at 857.095 kb on - strand at 857.095 kb on - strand at 857.095 kb on - strand at 857.095 kb on - strand at 857.100 kb on + strand at 857.100 kb on + strand at 857.100 kb on + strand at 857.100 kb on + strand at 857.101 kb on - strand at 857.381 kb on + strand, within MPMX19_05318 at 857.381 kb on + strand, within MPMX19_05318 at 857.381 kb on + strand, within MPMX19_05318 at 857.382 kb on - strand, within MPMX19_05318 at 857.382 kb on - strand, within MPMX19_05318 at 857.382 kb on - strand, within MPMX19_05318 at 857.568 kb on + strand, within MPMX19_05318 at 857.569 kb on - strand, within MPMX19_05318 at 857.569 kb on - strand, within MPMX19_05318 at 857.569 kb on - strand, within MPMX19_05318 at 857.569 kb on - strand, within MPMX19_05318 at 857.569 kb on - strand, within MPMX19_05318 at 857.604 kb on + strand, within MPMX19_05318 at 857.604 kb on + strand, within MPMX19_05318 at 857.604 kb on + strand, within MPMX19_05318 at 857.604 kb on + strand, within MPMX19_05318 at 857.604 kb on + strand, within MPMX19_05318 at 857.604 kb on + strand, within MPMX19_05318 at 857.604 kb on + strand, within MPMX19_05318 at 857.604 kb on + strand, within MPMX19_05318 at 857.604 kb on + strand, within MPMX19_05318 at 857.604 kb on + strand, within MPMX19_05318 at 857.604 kb on + strand, within MPMX19_05318 at 857.605 kb on - strand, within MPMX19_05318 at 857.605 kb on - strand, within MPMX19_05318 at 857.605 kb on - strand, within MPMX19_05318 at 857.880 kb on + strand, within MPMX19_05318 at 857.880 kb on + strand, within MPMX19_05318 at 857.880 kb on + strand, within MPMX19_05318 at 857.881 kb on - strand, within MPMX19_05318 at 857.881 kb on - strand, within MPMX19_05318 at 857.881 kb on - strand, within MPMX19_05318 at 857.881 kb on - strand, within MPMX19_05318 at 857.908 kb on + strand, within MPMX19_05318 at 857.908 kb on + strand, within MPMX19_05318 at 857.908 kb on + strand, within MPMX19_05318 at 857.908 kb on + strand, within MPMX19_05318 at 858.198 kb on + strand at 858.198 kb on + strand at 858.198 kb on + strand at 858.199 kb on - strand at 858.199 kb on - strand at 858.247 kb on + strand at 858.247 kb on + strand at 858.247 kb on + strand at 858.247 kb on + strand at 858.247 kb on + strand at 858.247 kb on + strand at 858.248 kb on - strand at 858.248 kb on - strand at 858.248 kb on - strand at 858.248 kb on - strand at 858.248 kb on - strand at 858.248 kb on - strand at 858.248 kb on - strand at 858.248 kb on - strand at 858.257 kb on - strand at 858.257 kb on - strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.399 kb on - strand at 858.399 kb on - strand at 858.399 kb on - strand at 858.399 kb on - strand at 858.399 kb on - strand at 858.399 kb on - strand at 858.399 kb on - strand at 858.399 kb on - strand at 858.399 kb on - strand at 858.399 kb on - strand at 858.399 kb on - strand at 858.399 kb on - strand at 858.399 kb on - strand at 858.399 kb on - strand at 858.399 kb on - strand at 858.399 kb on - strand at 858.399 kb on - strand at 858.399 kb on - strand at 858.399 kb on - strand at 858.399 kb on - strand at 858.399 kb on - strand at 858.399 kb on - strand at 858.399 kb on - strand at 858.422 kb on + strand, within MPMX19_05319 at 858.423 kb on - strand, within MPMX19_05319 at 858.423 kb on - strand, within MPMX19_05319 at 858.440 kb on + strand, within MPMX19_05319 at 858.440 kb on + strand, within MPMX19_05319 at 858.440 kb on + strand, within MPMX19_05319 at 858.440 kb on + strand, within MPMX19_05319 at 858.440 kb on + strand, within MPMX19_05319 at 858.440 kb on + strand, within MPMX19_05319 at 858.440 kb on + strand, within MPMX19_05319 at 858.440 kb on + strand, within MPMX19_05319 at 858.441 kb on - strand, within MPMX19_05319 at 858.441 kb on - strand, within MPMX19_05319 at 858.441 kb on - strand, within MPMX19_05319 at 858.441 kb on - strand, within MPMX19_05319 at 858.602 kb on + strand, within MPMX19_05319 at 858.602 kb on + strand, within MPMX19_05319 at 858.602 kb on + strand, within MPMX19_05319 at 858.602 kb on + strand, within MPMX19_05319 at 858.602 kb on + strand, within MPMX19_05319 at 858.602 kb on + strand, within MPMX19_05319 at 858.602 kb on + strand, within MPMX19_05319 at 858.602 kb on + strand, within MPMX19_05319 at 858.603 kb on - strand, within MPMX19_05319 at 858.603 kb on - strand, within MPMX19_05319 at 858.603 kb on - strand, within MPMX19_05319 at 858.603 kb on - strand, within MPMX19_05319 at 858.603 kb on - strand, within MPMX19_05319 at 858.603 kb on - strand, within MPMX19_05319 at 858.603 kb on - strand, within MPMX19_05319 at 858.603 kb on - strand, within MPMX19_05319 at 858.603 kb on - strand, within MPMX19_05319 at 858.603 kb on - strand, within MPMX19_05319 at 858.603 kb on - strand, within MPMX19_05319 at 858.603 kb on - strand, within MPMX19_05319 at 858.603 kb on - strand, within MPMX19_05319 at 858.603 kb on - strand, within MPMX19_05319 at 858.603 kb on - strand, within MPMX19_05319 at 858.603 kb on - strand, within MPMX19_05319 at 858.670 kb on + strand, within MPMX19_05319 at 858.671 kb on - strand, within MPMX19_05319 at 858.899 kb on + strand, within MPMX19_05319 at 858.899 kb on + strand, within MPMX19_05319 at 858.899 kb on + strand, within MPMX19_05319 at 858.899 kb on + strand, within MPMX19_05319 at 858.899 kb on + strand, within MPMX19_05319 at 858.899 kb on + strand, within MPMX19_05319 at 858.899 kb on + strand, within MPMX19_05319 at 858.899 kb on + strand, within MPMX19_05319 at 858.900 kb on - strand, within MPMX19_05319 at 858.900 kb on - strand, within MPMX19_05319 at 858.900 kb on - strand, within MPMX19_05319 at 858.900 kb on - strand, within MPMX19_05319 at 859.001 kb on - strand, within MPMX19_05319 at 859.136 kb on + strand, within MPMX19_05319 at 859.137 kb on - strand, within MPMX19_05319 at 859.196 kb on + strand, within MPMX19_05319
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 856,111 + MPMX19_05317 0.36 -0.3 856,111 + MPMX19_05317 0.36 -0.1 856,111 + MPMX19_05317 0.36 -1.3 856,112 - MPMX19_05317 0.36 -0.3 856,112 - MPMX19_05317 0.36 -0.8 856,112 - MPMX19_05317 0.36 +0.2 856,112 - MPMX19_05317 0.36 +0.3 857,094 + -0.6 857,094 + -0.8 857,094 + -0.3 857,095 - +0.1 857,095 - +0.6 857,095 - -0.8 857,095 - +0.0 857,095 - -0.7 857,100 + -1.1 857,100 + +1.3 857,100 + +1.0 857,100 + +0.8 857,101 - -0.4 857,381 + MPMX19_05318 0.30 +0.4 857,381 + MPMX19_05318 0.30 +1.3 857,381 + MPMX19_05318 0.30 -0.7 857,382 - MPMX19_05318 0.31 -0.1 857,382 - MPMX19_05318 0.31 -0.1 857,382 - MPMX19_05318 0.31 +0.2 857,568 + MPMX19_05318 0.46 -0.6 857,569 - MPMX19_05318 0.46 -0.2 857,569 - MPMX19_05318 0.46 +0.0 857,569 - MPMX19_05318 0.46 -0.2 857,569 - MPMX19_05318 0.46 -0.8 857,569 - MPMX19_05318 0.46 -2.4 857,604 + MPMX19_05318 0.49 -3.1 857,604 + MPMX19_05318 0.49 +0.0 857,604 + MPMX19_05318 0.49 +0.5 857,604 + MPMX19_05318 0.49 -0.4 857,604 + MPMX19_05318 0.49 -0.3 857,604 + MPMX19_05318 0.49 -0.3 857,604 + MPMX19_05318 0.49 +0.3 857,604 + MPMX19_05318 0.49 -0.6 857,604 + MPMX19_05318 0.49 +0.5 857,604 + MPMX19_05318 0.49 -0.5 857,604 + MPMX19_05318 0.49 +0.7 857,605 - MPMX19_05318 0.49 -0.3 857,605 - MPMX19_05318 0.49 -0.3 857,605 - MPMX19_05318 0.49 -0.3 857,880 + MPMX19_05318 0.72 +1.4 857,880 + MPMX19_05318 0.72 +0.8 857,880 + MPMX19_05318 0.72 -0.5 857,881 - MPMX19_05318 0.73 -0.6 857,881 - MPMX19_05318 0.73 +0.2 857,881 - MPMX19_05318 0.73 -0.5 857,881 - MPMX19_05318 0.73 +0.6 857,908 + MPMX19_05318 0.75 +0.0 857,908 + MPMX19_05318 0.75 -0.1 857,908 + MPMX19_05318 0.75 -0.1 857,908 + MPMX19_05318 0.75 -0.8 858,198 + +0.5 858,198 + -1.5 858,198 + +0.5 858,199 - -2.1 858,199 - +1.3 858,247 + -0.8 858,247 + +0.6 858,247 + -0.1 858,247 + +2.0 858,247 + -0.6 858,247 + -0.9 858,248 - +0.7 858,248 - -1.1 858,248 - +0.3 858,248 - -0.1 858,248 - -0.1 858,248 - +0.0 858,248 - +0.7 858,248 - -0.5 858,257 - -1.3 858,257 - +0.0 858,398 + -0.8 858,398 + -1.1 858,398 + -1.3 858,398 + -0.1 858,398 + +0.4 858,398 + +0.7 858,398 + +0.0 858,398 + -0.3 858,398 + +1.4 858,398 + +1.6 858,398 + -2.0 858,398 + -1.3 858,398 + -1.0 858,398 + +0.4 858,398 + -0.5 858,398 + -0.6 858,398 + +0.0 858,398 + -0.6 858,398 + +1.2 858,398 + +0.6 858,398 + +0.3 858,398 + -1.4 858,398 + -0.6 858,398 + -0.1 858,398 + -2.4 858,398 + -0.3 858,398 + -0.7 858,399 - -1.6 858,399 - -0.3 858,399 - -1.7 858,399 - +1.0 858,399 - +0.0 858,399 - -0.8 858,399 - -1.4 858,399 - +0.3 858,399 - -2.1 858,399 - -0.1 858,399 - +0.0 858,399 - -0.0 858,399 - +0.0 858,399 - +0.0 858,399 - -0.5 858,399 - -0.8 858,399 - -3.1 858,399 - -0.6 858,399 - +1.2 858,399 - +0.2 858,399 - -1.9 858,399 - -0.1 858,399 - +1.0 858,422 + MPMX19_05319 0.11 -0.7 858,423 - MPMX19_05319 0.11 -1.1 858,423 - MPMX19_05319 0.11 +0.2 858,440 + MPMX19_05319 0.13 +0.0 858,440 + MPMX19_05319 0.13 +1.8 858,440 + MPMX19_05319 0.13 -0.3 858,440 + MPMX19_05319 0.13 -1.0 858,440 + MPMX19_05319 0.13 -0.3 858,440 + MPMX19_05319 0.13 +0.4 858,440 + MPMX19_05319 0.13 +1.6 858,440 + MPMX19_05319 0.13 +0.0 858,441 - MPMX19_05319 0.13 -0.2 858,441 - MPMX19_05319 0.13 -1.3 858,441 - MPMX19_05319 0.13 -1.5 858,441 - MPMX19_05319 0.13 -1.1 858,602 + MPMX19_05319 0.27 +1.0 858,602 + MPMX19_05319 0.27 +0.7 858,602 + MPMX19_05319 0.27 -1.3 858,602 + MPMX19_05319 0.27 -1.2 858,602 + MPMX19_05319 0.27 -0.4 858,602 + MPMX19_05319 0.27 -0.0 858,602 + MPMX19_05319 0.27 +0.9 858,602 + MPMX19_05319 0.27 +0.2 858,603 - MPMX19_05319 0.27 +0.5 858,603 - MPMX19_05319 0.27 +1.2 858,603 - MPMX19_05319 0.27 +0.5 858,603 - MPMX19_05319 0.27 -0.2 858,603 - MPMX19_05319 0.27 -0.8 858,603 - MPMX19_05319 0.27 +0.2 858,603 - MPMX19_05319 0.27 -0.1 858,603 - MPMX19_05319 0.27 +0.5 858,603 - MPMX19_05319 0.27 +2.5 858,603 - MPMX19_05319 0.27 -0.3 858,603 - MPMX19_05319 0.27 +0.8 858,603 - MPMX19_05319 0.27 -0.6 858,603 - MPMX19_05319 0.27 -0.8 858,603 - MPMX19_05319 0.27 -0.6 858,603 - MPMX19_05319 0.27 +0.4 858,603 - MPMX19_05319 0.27 -0.6 858,670 + MPMX19_05319 0.33 -1.0 858,671 - MPMX19_05319 0.33 -0.8 858,899 + MPMX19_05319 0.53 -0.4 858,899 + MPMX19_05319 0.53 -1.6 858,899 + MPMX19_05319 0.53 +0.0 858,899 + MPMX19_05319 0.53 -0.2 858,899 + MPMX19_05319 0.53 -0.4 858,899 + MPMX19_05319 0.53 +0.9 858,899 + MPMX19_05319 0.53 -0.1 858,899 + MPMX19_05319 0.53 -1.4 858,900 - MPMX19_05319 0.53 +0.2 858,900 - MPMX19_05319 0.53 -0.1 858,900 - MPMX19_05319 0.53 -0.3 858,900 - MPMX19_05319 0.53 -1.3 859,001 - MPMX19_05319 0.62 -1.7 859,136 + MPMX19_05319 0.74 +0.3 859,137 - MPMX19_05319 0.74 +0.2 859,196 + MPMX19_05319 0.79 -0.7
Or see this region's nucleotide sequence