Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05300

Experiment: NL-CCM, start OD=0.3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_05299 and MPMX19_05300 overlap by 4 nucleotidesMPMX19_05300 and MPMX19_05301 are separated by 58 nucleotidesMPMX19_05301 and MPMX19_05302 overlap by 4 nucleotides MPMX19_05299: MPMX19_05299 - Periplasmic [NiFeSe] hydrogenase small subunit, at 834,110 to 835,120 _05299 MPMX19_05300: MPMX19_05300 - Signal transduction histidine-protein kinase AtoS, at 835,117 to 836,472 _05300 MPMX19_05301: MPMX19_05301 - Protein AaeX, at 836,531 to 836,740 _05301 MPMX19_05302: MPMX19_05302 - p-hydroxybenzoic acid efflux pump subunit AaeB, at 836,737 to 838,836 _05302 Position (kb) 835 836 837Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 834.339 kb on + strand, within MPMX19_05299at 834.339 kb on + strand, within MPMX19_05299at 834.339 kb on + strand, within MPMX19_05299at 834.421 kb on + strand, within MPMX19_05299at 834.421 kb on + strand, within MPMX19_05299at 834.421 kb on + strand, within MPMX19_05299at 834.421 kb on + strand, within MPMX19_05299at 834.421 kb on + strand, within MPMX19_05299at 834.421 kb on + strand, within MPMX19_05299at 834.421 kb on + strand, within MPMX19_05299at 834.421 kb on + strand, within MPMX19_05299at 834.422 kb on - strand, within MPMX19_05299at 834.422 kb on - strand, within MPMX19_05299at 834.422 kb on - strand, within MPMX19_05299at 834.422 kb on - strand, within MPMX19_05299at 834.422 kb on - strand, within MPMX19_05299at 834.422 kb on - strand, within MPMX19_05299at 834.422 kb on - strand, within MPMX19_05299at 834.422 kb on - strand, within MPMX19_05299at 834.471 kb on + strand, within MPMX19_05299at 834.471 kb on + strand, within MPMX19_05299at 834.471 kb on + strand, within MPMX19_05299at 834.471 kb on + strand, within MPMX19_05299at 834.472 kb on - strand, within MPMX19_05299at 834.472 kb on - strand, within MPMX19_05299at 834.472 kb on - strand, within MPMX19_05299at 834.472 kb on - strand, within MPMX19_05299at 834.472 kb on - strand, within MPMX19_05299at 834.472 kb on - strand, within MPMX19_05299at 834.477 kb on + strand, within MPMX19_05299at 834.477 kb on + strand, within MPMX19_05299at 834.478 kb on - strand, within MPMX19_05299at 834.478 kb on - strand, within MPMX19_05299at 834.478 kb on - strand, within MPMX19_05299at 834.478 kb on - strand, within MPMX19_05299at 834.478 kb on - strand, within MPMX19_05299at 834.478 kb on - strand, within MPMX19_05299at 834.480 kb on + strand, within MPMX19_05299at 834.480 kb on + strand, within MPMX19_05299at 834.481 kb on - strand, within MPMX19_05299at 834.481 kb on - strand, within MPMX19_05299at 834.522 kb on + strand, within MPMX19_05299at 834.523 kb on - strand, within MPMX19_05299at 834.523 kb on - strand, within MPMX19_05299at 834.523 kb on - strand, within MPMX19_05299at 834.523 kb on - strand, within MPMX19_05299at 834.523 kb on - strand, within MPMX19_05299at 834.523 kb on - strand, within MPMX19_05299at 834.523 kb on - strand, within MPMX19_05299at 834.523 kb on - strand, within MPMX19_05299at 834.540 kb on + strand, within MPMX19_05299at 834.540 kb on + strand, within MPMX19_05299at 834.540 kb on + strand, within MPMX19_05299at 834.540 kb on + strand, within MPMX19_05299at 834.540 kb on + strand, within MPMX19_05299at 834.541 kb on - strand, within MPMX19_05299at 834.702 kb on + strand, within MPMX19_05299at 834.702 kb on + strand, within MPMX19_05299at 834.702 kb on + strand, within MPMX19_05299at 834.702 kb on + strand, within MPMX19_05299at 834.703 kb on - strand, within MPMX19_05299at 834.703 kb on - strand, within MPMX19_05299at 834.703 kb on - strand, within MPMX19_05299at 834.703 kb on - strand, within MPMX19_05299at 834.703 kb on - strand, within MPMX19_05299at 835.232 kb on + strandat 835.232 kb on + strandat 835.232 kb on + strandat 835.232 kb on + strandat 835.232 kb on + strandat 835.233 kb on - strandat 835.233 kb on - strandat 835.233 kb on - strandat 835.233 kb on - strandat 835.233 kb on - strandat 835.765 kb on + strand, within MPMX19_05300at 835.765 kb on + strand, within MPMX19_05300at 835.765 kb on + strand, within MPMX19_05300at 835.765 kb on + strand, within MPMX19_05300at 835.765 kb on + strand, within MPMX19_05300at 835.765 kb on + strand, within MPMX19_05300at 835.765 kb on + strand, within MPMX19_05300at 835.766 kb on - strand, within MPMX19_05300at 835.766 kb on - strand, within MPMX19_05300at 835.770 kb on - strand, within MPMX19_05300at 835.790 kb on + strand, within MPMX19_05300at 835.791 kb on - strand, within MPMX19_05300at 835.817 kb on + strand, within MPMX19_05300at 835.817 kb on + strand, within MPMX19_05300at 836.021 kb on + strand, within MPMX19_05300at 836.022 kb on - strand, within MPMX19_05300at 836.369 kb on + strandat 836.369 kb on + strandat 836.369 kb on + strandat 836.369 kb on + strandat 836.369 kb on + strandat 836.370 kb on - strandat 836.370 kb on - strandat 836.370 kb on - strandat 836.370 kb on - strandat 836.370 kb on - strandat 836.484 kb on + strandat 836.484 kb on + strandat 836.484 kb on + strandat 836.484 kb on + strandat 836.484 kb on + strandat 836.484 kb on + strandat 836.484 kb on + strandat 836.484 kb on + strandat 836.484 kb on + strandat 836.484 kb on + strandat 836.485 kb on - strandat 836.485 kb on - strandat 836.485 kb on - strandat 836.485 kb on - strandat 836.485 kb on - strandat 836.485 kb on - strandat 836.485 kb on - strandat 836.485 kb on - strandat 836.485 kb on - strandat 836.485 kb on - strandat 836.485 kb on - strandat 836.485 kb on - strandat 836.485 kb on - strandat 836.583 kb on + strand, within MPMX19_05301at 836.583 kb on + strand, within MPMX19_05301at 836.583 kb on + strand, within MPMX19_05301at 836.583 kb on + strand, within MPMX19_05301at 836.583 kb on + strand, within MPMX19_05301at 836.583 kb on + strand, within MPMX19_05301at 836.583 kb on + strand, within MPMX19_05301at 836.583 kb on + strand, within MPMX19_05301at 836.583 kb on + strand, within MPMX19_05301at 836.583 kb on + strand, within MPMX19_05301at 836.583 kb on + strand, within MPMX19_05301at 836.583 kb on + strand, within MPMX19_05301at 836.584 kb on - strand, within MPMX19_05301at 836.584 kb on - strand, within MPMX19_05301at 836.584 kb on - strand, within MPMX19_05301at 836.584 kb on - strand, within MPMX19_05301at 836.584 kb on - strand, within MPMX19_05301at 836.584 kb on - strand, within MPMX19_05301at 836.584 kb on - strand, within MPMX19_05301at 836.584 kb on - strand, within MPMX19_05301at 836.584 kb on - strand, within MPMX19_05301at 836.584 kb on - strand, within MPMX19_05301at 836.584 kb on - strand, within MPMX19_05301at 836.584 kb on - strand, within MPMX19_05301at 836.584 kb on - strand, within MPMX19_05301at 836.625 kb on + strand, within MPMX19_05301at 836.625 kb on + strand, within MPMX19_05301at 836.625 kb on + strand, within MPMX19_05301at 836.625 kb on + strand, within MPMX19_05301at 836.626 kb on - strand, within MPMX19_05301at 836.718 kb on + strand, within MPMX19_05301at 836.718 kb on + strand, within MPMX19_05301at 836.718 kb on + strand, within MPMX19_05301at 836.718 kb on + strand, within MPMX19_05301at 836.718 kb on + strand, within MPMX19_05301at 836.718 kb on + strand, within MPMX19_05301at 836.719 kb on - strand, within MPMX19_05301at 836.719 kb on - strand, within MPMX19_05301at 836.719 kb on - strand, within MPMX19_05301at 836.890 kb on + strandat 836.890 kb on + strandat 836.891 kb on - strandat 836.891 kb on - strandat 836.891 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
remove
834,339 + MPMX19_05299 0.23 +0.5
834,339 + MPMX19_05299 0.23 -0.4
834,339 + MPMX19_05299 0.23 -0.1
834,421 + MPMX19_05299 0.31 -1.4
834,421 + MPMX19_05299 0.31 -0.1
834,421 + MPMX19_05299 0.31 -1.4
834,421 + MPMX19_05299 0.31 +0.9
834,421 + MPMX19_05299 0.31 +0.2
834,421 + MPMX19_05299 0.31 -1.8
834,421 + MPMX19_05299 0.31 -1.7
834,421 + MPMX19_05299 0.31 +1.4
834,422 - MPMX19_05299 0.31 -0.2
834,422 - MPMX19_05299 0.31 -1.3
834,422 - MPMX19_05299 0.31 -0.6
834,422 - MPMX19_05299 0.31 +0.4
834,422 - MPMX19_05299 0.31 +1.2
834,422 - MPMX19_05299 0.31 -0.4
834,422 - MPMX19_05299 0.31 -1.6
834,422 - MPMX19_05299 0.31 -1.1
834,471 + MPMX19_05299 0.36 -0.3
834,471 + MPMX19_05299 0.36 +1.3
834,471 + MPMX19_05299 0.36 -0.6
834,471 + MPMX19_05299 0.36 +1.0
834,472 - MPMX19_05299 0.36 -0.3
834,472 - MPMX19_05299 0.36 -1.5
834,472 - MPMX19_05299 0.36 -1.7
834,472 - MPMX19_05299 0.36 +1.0
834,472 - MPMX19_05299 0.36 +0.4
834,472 - MPMX19_05299 0.36 -2.1
834,477 + MPMX19_05299 0.36 +0.4
834,477 + MPMX19_05299 0.36 -0.2
834,478 - MPMX19_05299 0.36 -0.3
834,478 - MPMX19_05299 0.36 -1.3
834,478 - MPMX19_05299 0.36 -0.2
834,478 - MPMX19_05299 0.36 +0.9
834,478 - MPMX19_05299 0.36 -0.3
834,478 - MPMX19_05299 0.36 -1.2
834,480 + MPMX19_05299 0.37 -0.8
834,480 + MPMX19_05299 0.37 -0.0
834,481 - MPMX19_05299 0.37 -0.8
834,481 - MPMX19_05299 0.37 -0.3
834,522 + MPMX19_05299 0.41 -0.1
834,523 - MPMX19_05299 0.41 -1.3
834,523 - MPMX19_05299 0.41 -1.4
834,523 - MPMX19_05299 0.41 -0.6
834,523 - MPMX19_05299 0.41 +1.6
834,523 - MPMX19_05299 0.41 +1.4
834,523 - MPMX19_05299 0.41 -1.0
834,523 - MPMX19_05299 0.41 -0.8
834,523 - MPMX19_05299 0.41 -0.6
834,540 + MPMX19_05299 0.43 -1.0
834,540 + MPMX19_05299 0.43 -0.2
834,540 + MPMX19_05299 0.43 +1.1
834,540 + MPMX19_05299 0.43 -0.6
834,540 + MPMX19_05299 0.43 +0.2
834,541 - MPMX19_05299 0.43 +0.0
834,702 + MPMX19_05299 0.59 +0.7
834,702 + MPMX19_05299 0.59 +0.2
834,702 + MPMX19_05299 0.59 -0.6
834,702 + MPMX19_05299 0.59 -0.5
834,703 - MPMX19_05299 0.59 -1.1
834,703 - MPMX19_05299 0.59 -2.8
834,703 - MPMX19_05299 0.59 -0.1
834,703 - MPMX19_05299 0.59 -1.6
834,703 - MPMX19_05299 0.59 -0.5
835,232 + +0.8
835,232 + -1.6
835,232 + -1.0
835,232 + -0.3
835,232 + -0.4
835,233 - +0.2
835,233 - -0.8
835,233 - -1.4
835,233 - +0.0
835,233 - +1.0
835,765 + MPMX19_05300 0.48 +0.3
835,765 + MPMX19_05300 0.48 -0.2
835,765 + MPMX19_05300 0.48 +0.4
835,765 + MPMX19_05300 0.48 -1.3
835,765 + MPMX19_05300 0.48 +0.4
835,765 + MPMX19_05300 0.48 +0.0
835,765 + MPMX19_05300 0.48 +0.4
835,766 - MPMX19_05300 0.48 +0.4
835,766 - MPMX19_05300 0.48 -0.6
835,770 - MPMX19_05300 0.48 -0.6
835,790 + MPMX19_05300 0.50 -1.8
835,791 - MPMX19_05300 0.50 +0.6
835,817 + MPMX19_05300 0.52 +2.8
835,817 + MPMX19_05300 0.52 +1.0
836,021 + MPMX19_05300 0.67 -1.6
836,022 - MPMX19_05300 0.67 +0.4
836,369 + -0.4
836,369 + -1.0
836,369 + -0.7
836,369 + +0.0
836,369 + +0.2
836,370 - -2.1
836,370 - +0.9
836,370 - -0.8
836,370 - +0.7
836,370 - -0.6
836,484 + -1.0
836,484 + +1.2
836,484 + +0.4
836,484 + +0.9
836,484 + -1.6
836,484 + +0.1
836,484 + -0.3
836,484 + -0.2
836,484 + -0.3
836,484 + +1.4
836,485 - +0.2
836,485 - +0.8
836,485 - -1.0
836,485 - -0.5
836,485 - -0.8
836,485 - -2.0
836,485 - -1.8
836,485 - +0.1
836,485 - +0.2
836,485 - -0.7
836,485 - -1.6
836,485 - -0.9
836,485 - -0.4
836,583 + MPMX19_05301 0.25 -1.3
836,583 + MPMX19_05301 0.25 -1.4
836,583 + MPMX19_05301 0.25 -0.6
836,583 + MPMX19_05301 0.25 +0.4
836,583 + MPMX19_05301 0.25 +0.6
836,583 + MPMX19_05301 0.25 +0.7
836,583 + MPMX19_05301 0.25 -0.1
836,583 + MPMX19_05301 0.25 -0.6
836,583 + MPMX19_05301 0.25 -0.6
836,583 + MPMX19_05301 0.25 -1.6
836,583 + MPMX19_05301 0.25 -0.9
836,583 + MPMX19_05301 0.25 -0.5
836,584 - MPMX19_05301 0.25 +0.2
836,584 - MPMX19_05301 0.25 +0.9
836,584 - MPMX19_05301 0.25 -0.9
836,584 - MPMX19_05301 0.25 -0.1
836,584 - MPMX19_05301 0.25 -1.3
836,584 - MPMX19_05301 0.25 +0.3
836,584 - MPMX19_05301 0.25 -2.9
836,584 - MPMX19_05301 0.25 +0.7
836,584 - MPMX19_05301 0.25 -0.3
836,584 - MPMX19_05301 0.25 +0.0
836,584 - MPMX19_05301 0.25 -0.6
836,584 - MPMX19_05301 0.25 -1.2
836,584 - MPMX19_05301 0.25 -0.1
836,625 + MPMX19_05301 0.45 -0.8
836,625 + MPMX19_05301 0.45 -0.6
836,625 + MPMX19_05301 0.45 +0.4
836,625 + MPMX19_05301 0.45 -0.3
836,626 - MPMX19_05301 0.45 -1.7
836,718 + MPMX19_05301 0.89 +0.1
836,718 + MPMX19_05301 0.89 +1.2
836,718 + MPMX19_05301 0.89 +1.7
836,718 + MPMX19_05301 0.89 +2.0
836,718 + MPMX19_05301 0.89 -2.6
836,718 + MPMX19_05301 0.89 -0.7
836,719 - MPMX19_05301 0.90 -0.1
836,719 - MPMX19_05301 0.90 -0.6
836,719 - MPMX19_05301 0.90 +0.4
836,890 + -1.4
836,890 + -1.3
836,891 - +0.4
836,891 - +0.0
836,891 - -0.6

Or see this region's nucleotide sequence