Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05270 and MPMX19_05271 are separated by 95 nucleotides MPMX19_05271 and MPMX19_05272 are separated by 20 nucleotides MPMX19_05272 and MPMX19_05273 are separated by 11 nucleotides MPMX19_05273 and MPMX19_05274 are separated by 229 nucleotides MPMX19_05274 and MPMX19_05275 are separated by 13 nucleotides
MPMX19_05270: MPMX19_05270 - hypothetical protein, at 804,968 to 805,495
_05270
MPMX19_05271: MPMX19_05271 - hypothetical protein, at 805,591 to 805,746
_05271
MPMX19_05272: MPMX19_05272 - hypothetical protein, at 805,767 to 806,069
_05272
MPMX19_05273: MPMX19_05273 - hypothetical protein, at 806,081 to 806,695
_05273
MPMX19_05274: MPMX19_05274 - Nitric oxide reductase subunit C, at 806,925 to 807,377
_05274
MPMX19_05275: MPMX19_05275 - Nitric oxide reductase subunit B, at 807,391 to 808,740
_05275
Position (kb) 806
807 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 805.258 kb on + strand, within MPMX19_05270 at 805.258 kb on + strand, within MPMX19_05270 at 805.258 kb on + strand, within MPMX19_05270 at 805.258 kb on + strand, within MPMX19_05270 at 805.259 kb on - strand, within MPMX19_05270 at 805.259 kb on - strand, within MPMX19_05270 at 805.259 kb on - strand, within MPMX19_05270 at 805.259 kb on - strand, within MPMX19_05270 at 805.259 kb on - strand, within MPMX19_05270 at 805.259 kb on - strand, within MPMX19_05270 at 805.269 kb on + strand, within MPMX19_05270 at 805.269 kb on + strand, within MPMX19_05270 at 805.269 kb on + strand, within MPMX19_05270 at 805.269 kb on + strand, within MPMX19_05270 at 805.269 kb on + strand, within MPMX19_05270 at 805.270 kb on - strand, within MPMX19_05270 at 805.270 kb on - strand, within MPMX19_05270 at 805.270 kb on - strand, within MPMX19_05270 at 805.270 kb on - strand, within MPMX19_05270 at 805.270 kb on - strand, within MPMX19_05270 at 805.371 kb on + strand, within MPMX19_05270 at 805.371 kb on + strand, within MPMX19_05270 at 805.371 kb on + strand, within MPMX19_05270 at 805.372 kb on - strand, within MPMX19_05270 at 805.372 kb on - strand, within MPMX19_05270 at 805.372 kb on - strand, within MPMX19_05270 at 805.372 kb on - strand, within MPMX19_05270 at 805.540 kb on + strand at 805.540 kb on + strand at 805.540 kb on + strand at 805.540 kb on + strand at 805.540 kb on + strand at 805.540 kb on + strand at 805.541 kb on - strand at 805.541 kb on - strand at 805.541 kb on - strand at 805.541 kb on - strand at 805.541 kb on - strand at 805.541 kb on - strand at 805.541 kb on - strand at 805.541 kb on - strand at 805.546 kb on + strand at 805.547 kb on - strand at 805.547 kb on - strand at 805.547 kb on - strand at 805.599 kb on + strand at 805.679 kb on + strand, within MPMX19_05271 at 805.679 kb on + strand, within MPMX19_05271 at 805.679 kb on + strand, within MPMX19_05271 at 805.679 kb on + strand, within MPMX19_05271 at 805.734 kb on + strand at 805.734 kb on + strand at 805.734 kb on + strand at 805.734 kb on + strand at 805.734 kb on + strand at 805.734 kb on + strand at 805.734 kb on + strand at 805.735 kb on - strand at 805.735 kb on - strand at 805.735 kb on - strand at 805.735 kb on - strand at 805.735 kb on - strand at 805.735 kb on - strand at 805.735 kb on - strand at 805.891 kb on + strand, within MPMX19_05272 at 805.891 kb on + strand, within MPMX19_05272 at 805.891 kb on + strand, within MPMX19_05272 at 805.891 kb on + strand, within MPMX19_05272 at 805.891 kb on + strand, within MPMX19_05272 at 805.891 kb on + strand, within MPMX19_05272 at 805.892 kb on - strand, within MPMX19_05272 at 805.892 kb on - strand, within MPMX19_05272 at 805.892 kb on - strand, within MPMX19_05272 at 805.892 kb on - strand, within MPMX19_05272 at 806.094 kb on + strand at 806.094 kb on + strand at 806.094 kb on + strand at 806.094 kb on + strand at 806.094 kb on + strand at 806.094 kb on + strand at 806.095 kb on - strand at 806.095 kb on - strand at 806.095 kb on - strand at 806.095 kb on - strand at 806.095 kb on - strand at 806.095 kb on - strand at 806.106 kb on + strand at 806.106 kb on + strand at 806.107 kb on - strand at 806.259 kb on + strand, within MPMX19_05273 at 806.259 kb on + strand, within MPMX19_05273 at 806.259 kb on + strand, within MPMX19_05273 at 806.259 kb on + strand, within MPMX19_05273 at 806.260 kb on - strand, within MPMX19_05273 at 806.260 kb on - strand, within MPMX19_05273 at 806.260 kb on - strand, within MPMX19_05273 at 806.260 kb on - strand, within MPMX19_05273 at 806.260 kb on - strand, within MPMX19_05273 at 806.316 kb on + strand, within MPMX19_05273 at 806.316 kb on + strand, within MPMX19_05273 at 806.316 kb on + strand, within MPMX19_05273 at 806.316 kb on + strand, within MPMX19_05273 at 806.317 kb on - strand, within MPMX19_05273 at 806.317 kb on - strand, within MPMX19_05273 at 806.433 kb on + strand, within MPMX19_05273 at 806.434 kb on - strand, within MPMX19_05273 at 806.434 kb on - strand, within MPMX19_05273 at 806.723 kb on + strand at 806.723 kb on + strand at 806.723 kb on + strand at 806.724 kb on - strand at 806.724 kb on - strand at 806.724 kb on - strand at 806.735 kb on - strand at 806.797 kb on + strand at 806.797 kb on + strand at 806.797 kb on + strand at 806.798 kb on - strand at 806.798 kb on - strand at 806.818 kb on + strand at 806.818 kb on + strand at 806.818 kb on + strand at 806.818 kb on + strand at 806.819 kb on - strand at 806.819 kb on - strand at 807.027 kb on + strand, within MPMX19_05274 at 807.027 kb on + strand, within MPMX19_05274 at 807.027 kb on + strand, within MPMX19_05274 at 807.027 kb on + strand, within MPMX19_05274 at 807.027 kb on + strand, within MPMX19_05274 at 807.028 kb on - strand, within MPMX19_05274 at 807.028 kb on - strand, within MPMX19_05274 at 807.028 kb on - strand, within MPMX19_05274 at 807.051 kb on - strand, within MPMX19_05274 at 807.144 kb on + strand, within MPMX19_05274 at 807.144 kb on + strand, within MPMX19_05274 at 807.145 kb on - strand, within MPMX19_05274 at 807.145 kb on - strand, within MPMX19_05274 at 807.180 kb on + strand, within MPMX19_05274 at 807.181 kb on - strand, within MPMX19_05274 at 807.397 kb on + strand at 807.398 kb on - strand at 807.398 kb on - strand at 807.421 kb on + strand at 807.421 kb on + strand at 807.421 kb on + strand at 807.422 kb on - strand at 807.422 kb on - strand at 807.424 kb on + strand at 807.424 kb on + strand at 807.424 kb on + strand at 807.424 kb on + strand at 807.424 kb on + strand at 807.425 kb on - strand at 807.425 kb on - strand at 807.425 kb on - strand at 807.425 kb on - strand at 807.490 kb on + strand at 807.490 kb on + strand at 807.490 kb on + strand at 807.490 kb on + strand at 807.490 kb on + strand at 807.491 kb on - strand at 807.491 kb on - strand at 807.491 kb on - strand at 807.491 kb on - strand at 807.491 kb on - strand at 807.491 kb on - strand at 807.491 kb on - strand at 807.491 kb on - strand at 807.491 kb on - strand at 807.491 kb on - strand at 807.491 kb on - strand at 807.598 kb on + strand, within MPMX19_05275 at 807.598 kb on + strand, within MPMX19_05275 at 807.599 kb on - strand, within MPMX19_05275 at 807.599 kb on - strand, within MPMX19_05275 at 807.599 kb on - strand, within MPMX19_05275 at 807.601 kb on + strand, within MPMX19_05275 at 807.601 kb on + strand, within MPMX19_05275 at 807.601 kb on + strand, within MPMX19_05275 at 807.601 kb on + strand, within MPMX19_05275 at 807.601 kb on + strand, within MPMX19_05275 at 807.601 kb on + strand, within MPMX19_05275 at 807.601 kb on + strand, within MPMX19_05275 at 807.601 kb on + strand, within MPMX19_05275 at 807.602 kb on - strand, within MPMX19_05275 at 807.602 kb on - strand, within MPMX19_05275 at 807.602 kb on - strand, within MPMX19_05275 at 807.602 kb on - strand, within MPMX19_05275 at 807.602 kb on - strand, within MPMX19_05275 at 807.602 kb on - strand, within MPMX19_05275 at 807.602 kb on - strand, within MPMX19_05275 at 807.602 kb on - strand, within MPMX19_05275 at 807.634 kb on + strand, within MPMX19_05275 at 807.634 kb on + strand, within MPMX19_05275 at 807.634 kb on + strand, within MPMX19_05275 at 807.634 kb on + strand, within MPMX19_05275 at 807.634 kb on + strand, within MPMX19_05275 at 807.634 kb on + strand, within MPMX19_05275 at 807.634 kb on + strand, within MPMX19_05275 at 807.634 kb on + strand, within MPMX19_05275 at 807.634 kb on + strand, within MPMX19_05275 at 807.634 kb on + strand, within MPMX19_05275 at 807.634 kb on + strand, within MPMX19_05275 at 807.635 kb on - strand, within MPMX19_05275 at 807.635 kb on - strand, within MPMX19_05275 at 807.635 kb on - strand, within MPMX19_05275 at 807.635 kb on - strand, within MPMX19_05275 at 807.635 kb on - strand, within MPMX19_05275
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 805,258 + MPMX19_05270 0.55 -1.4 805,258 + MPMX19_05270 0.55 -0.1 805,258 + MPMX19_05270 0.55 +0.2 805,258 + MPMX19_05270 0.55 +1.1 805,259 - MPMX19_05270 0.55 -0.5 805,259 - MPMX19_05270 0.55 +0.0 805,259 - MPMX19_05270 0.55 -2.0 805,259 - MPMX19_05270 0.55 +0.6 805,259 - MPMX19_05270 0.55 -1.0 805,259 - MPMX19_05270 0.55 +0.2 805,269 + MPMX19_05270 0.57 -0.3 805,269 + MPMX19_05270 0.57 -0.6 805,269 + MPMX19_05270 0.57 -0.1 805,269 + MPMX19_05270 0.57 +0.3 805,269 + MPMX19_05270 0.57 -0.4 805,270 - MPMX19_05270 0.57 -0.4 805,270 - MPMX19_05270 0.57 -0.5 805,270 - MPMX19_05270 0.57 -0.8 805,270 - MPMX19_05270 0.57 -2.7 805,270 - MPMX19_05270 0.57 -1.4 805,371 + MPMX19_05270 0.76 -0.7 805,371 + MPMX19_05270 0.76 -2.3 805,371 + MPMX19_05270 0.76 -0.9 805,372 - MPMX19_05270 0.77 -0.2 805,372 - MPMX19_05270 0.77 -1.4 805,372 - MPMX19_05270 0.77 -0.1 805,372 - MPMX19_05270 0.77 -2.4 805,540 + +1.0 805,540 + +1.0 805,540 + +0.7 805,540 + -0.6 805,540 + +0.8 805,540 + -0.7 805,541 - -0.8 805,541 - -1.0 805,541 - -1.1 805,541 - -0.3 805,541 - -1.1 805,541 - -0.8 805,541 - -0.8 805,541 - -1.1 805,546 + -2.0 805,547 - +1.0 805,547 - -0.1 805,547 - +0.0 805,599 + +1.0 805,679 + MPMX19_05271 0.56 -0.3 805,679 + MPMX19_05271 0.56 +0.2 805,679 + MPMX19_05271 0.56 -0.4 805,679 + MPMX19_05271 0.56 -0.8 805,734 + -1.7 805,734 + +0.5 805,734 + -1.5 805,734 + -0.6 805,734 + -0.8 805,734 + -0.7 805,734 + -0.0 805,735 - -0.8 805,735 - -0.3 805,735 - -1.3 805,735 - -0.6 805,735 - +0.1 805,735 - -1.4 805,735 - -0.3 805,891 + MPMX19_05272 0.41 -1.1 805,891 + MPMX19_05272 0.41 -0.6 805,891 + MPMX19_05272 0.41 +0.4 805,891 + MPMX19_05272 0.41 +0.2 805,891 + MPMX19_05272 0.41 -0.3 805,891 + MPMX19_05272 0.41 -0.3 805,892 - MPMX19_05272 0.41 +0.6 805,892 - MPMX19_05272 0.41 -1.1 805,892 - MPMX19_05272 0.41 -0.3 805,892 - MPMX19_05272 0.41 -1.7 806,094 + +0.4 806,094 + +0.7 806,094 + -1.6 806,094 + -0.5 806,094 + -0.6 806,094 + -1.0 806,095 - -1.0 806,095 - -0.6 806,095 - -0.1 806,095 - +0.4 806,095 - +0.6 806,095 - +0.0 806,106 + +0.0 806,106 + -0.6 806,107 - +1.8 806,259 + MPMX19_05273 0.29 +0.4 806,259 + MPMX19_05273 0.29 +0.9 806,259 + MPMX19_05273 0.29 +0.2 806,259 + MPMX19_05273 0.29 -0.0 806,260 - MPMX19_05273 0.29 -0.8 806,260 - MPMX19_05273 0.29 -0.6 806,260 - MPMX19_05273 0.29 +0.4 806,260 - MPMX19_05273 0.29 -0.8 806,260 - MPMX19_05273 0.29 -1.7 806,316 + MPMX19_05273 0.38 +1.0 806,316 + MPMX19_05273 0.38 +0.3 806,316 + MPMX19_05273 0.38 -0.1 806,316 + MPMX19_05273 0.38 -0.2 806,317 - MPMX19_05273 0.38 -1.6 806,317 - MPMX19_05273 0.38 -0.4 806,433 + MPMX19_05273 0.57 +0.0 806,434 - MPMX19_05273 0.57 -0.6 806,434 - MPMX19_05273 0.57 +1.3 806,723 + -0.5 806,723 + -1.7 806,723 + +0.1 806,724 - -0.4 806,724 - -0.3 806,724 - -1.3 806,735 - -1.4 806,797 + -0.3 806,797 + -2.4 806,797 + -0.8 806,798 - -2.9 806,798 - -1.4 806,818 + -0.9 806,818 + +0.7 806,818 + -0.2 806,818 + -0.2 806,819 - +0.4 806,819 - +0.0 807,027 + MPMX19_05274 0.23 -0.7 807,027 + MPMX19_05274 0.23 -0.9 807,027 + MPMX19_05274 0.23 -0.5 807,027 + MPMX19_05274 0.23 -0.6 807,027 + MPMX19_05274 0.23 +0.3 807,028 - MPMX19_05274 0.23 -1.4 807,028 - MPMX19_05274 0.23 -0.6 807,028 - MPMX19_05274 0.23 +0.8 807,051 - MPMX19_05274 0.28 -0.3 807,144 + MPMX19_05274 0.48 -1.9 807,144 + MPMX19_05274 0.48 -0.8 807,145 - MPMX19_05274 0.49 +0.8 807,145 - MPMX19_05274 0.49 -0.1 807,180 + MPMX19_05274 0.56 -0.3 807,181 - MPMX19_05274 0.57 -1.9 807,397 + -0.2 807,398 - +0.4 807,398 - -0.1 807,421 + +0.2 807,421 + -1.0 807,421 + +1.6 807,422 - -0.6 807,422 - -0.1 807,424 + +2.0 807,424 + +1.0 807,424 + +4.0 807,424 + -1.0 807,424 + +0.4 807,425 - -1.6 807,425 - -1.4 807,425 - -1.2 807,425 - -1.1 807,490 + +0.2 807,490 + +0.7 807,490 + +1.1 807,490 + +1.2 807,490 + +0.3 807,491 - -0.0 807,491 - -1.0 807,491 - -0.1 807,491 - -2.7 807,491 - -1.6 807,491 - +0.4 807,491 - -1.3 807,491 - -0.2 807,491 - +0.4 807,491 - -0.9 807,491 - -1.1 807,598 + MPMX19_05275 0.15 +0.3 807,598 + MPMX19_05275 0.15 +0.4 807,599 - MPMX19_05275 0.15 +0.2 807,599 - MPMX19_05275 0.15 -1.0 807,599 - MPMX19_05275 0.15 -0.8 807,601 + MPMX19_05275 0.16 -0.4 807,601 + MPMX19_05275 0.16 -2.3 807,601 + MPMX19_05275 0.16 -2.1 807,601 + MPMX19_05275 0.16 -1.7 807,601 + MPMX19_05275 0.16 -0.4 807,601 + MPMX19_05275 0.16 -0.2 807,601 + MPMX19_05275 0.16 -1.1 807,601 + MPMX19_05275 0.16 -1.8 807,602 - MPMX19_05275 0.16 -0.3 807,602 - MPMX19_05275 0.16 -1.0 807,602 - MPMX19_05275 0.16 +1.0 807,602 - MPMX19_05275 0.16 -0.7 807,602 - MPMX19_05275 0.16 -0.4 807,602 - MPMX19_05275 0.16 -0.6 807,602 - MPMX19_05275 0.16 -0.1 807,602 - MPMX19_05275 0.16 +0.3 807,634 + MPMX19_05275 0.18 -1.6 807,634 + MPMX19_05275 0.18 +0.4 807,634 + MPMX19_05275 0.18 -1.1 807,634 + MPMX19_05275 0.18 +0.3 807,634 + MPMX19_05275 0.18 -2.3 807,634 + MPMX19_05275 0.18 -0.7 807,634 + MPMX19_05275 0.18 -1.1 807,634 + MPMX19_05275 0.18 +0.0 807,634 + MPMX19_05275 0.18 +0.2 807,634 + MPMX19_05275 0.18 +0.3 807,634 + MPMX19_05275 0.18 -1.7 807,635 - MPMX19_05275 0.18 -0.8 807,635 - MPMX19_05275 0.18 +0.2 807,635 - MPMX19_05275 0.18 -0.0 807,635 - MPMX19_05275 0.18 -0.5 807,635 - MPMX19_05275 0.18 -1.4
Or see this region's nucleotide sequence