Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05254

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05253 and MPMX19_05254 are separated by 79 nucleotidesMPMX19_05254 and MPMX19_05255 are separated by 346 nucleotides MPMX19_05253: MPMX19_05253 - Carbon monoxide dehydrogenase large chain, at 782,926 to 785,316 _05253 MPMX19_05254: MPMX19_05254 - Carbon monoxide dehydrogenase small chain, at 785,396 to 785,896 _05254 MPMX19_05255: MPMX19_05255 - hypothetical protein, at 786,243 to 787,217 _05255 Position (kb) 785 786Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 784.526 kb on + strand, within MPMX19_05253at 784.526 kb on + strand, within MPMX19_05253at 784.527 kb on - strand, within MPMX19_05253at 784.664 kb on + strand, within MPMX19_05253at 784.664 kb on + strand, within MPMX19_05253at 784.664 kb on + strand, within MPMX19_05253at 784.664 kb on + strand, within MPMX19_05253at 784.664 kb on + strand, within MPMX19_05253at 784.665 kb on - strand, within MPMX19_05253at 784.665 kb on - strand, within MPMX19_05253at 784.665 kb on - strand, within MPMX19_05253at 784.665 kb on - strand, within MPMX19_05253at 784.665 kb on - strand, within MPMX19_05253at 784.665 kb on - strand, within MPMX19_05253at 784.665 kb on - strand, within MPMX19_05253at 784.685 kb on + strand, within MPMX19_05253at 784.685 kb on + strand, within MPMX19_05253at 784.685 kb on + strand, within MPMX19_05253at 784.686 kb on - strand, within MPMX19_05253at 784.686 kb on - strand, within MPMX19_05253at 784.686 kb on - strand, within MPMX19_05253at 784.817 kb on + strand, within MPMX19_05253at 784.817 kb on + strand, within MPMX19_05253at 784.818 kb on - strand, within MPMX19_05253at 784.818 kb on - strand, within MPMX19_05253at 784.818 kb on - strand, within MPMX19_05253at 784.818 kb on - strand, within MPMX19_05253at 784.818 kb on - strand, within MPMX19_05253at 784.907 kb on + strand, within MPMX19_05253at 784.907 kb on + strand, within MPMX19_05253at 784.907 kb on + strand, within MPMX19_05253at 784.908 kb on - strand, within MPMX19_05253at 784.988 kb on + strand, within MPMX19_05253at 784.988 kb on + strand, within MPMX19_05253at 784.988 kb on + strand, within MPMX19_05253at 784.988 kb on + strand, within MPMX19_05253at 784.988 kb on + strand, within MPMX19_05253at 784.988 kb on + strand, within MPMX19_05253at 784.988 kb on + strand, within MPMX19_05253at 784.988 kb on + strand, within MPMX19_05253at 784.989 kb on - strand, within MPMX19_05253at 784.989 kb on - strand, within MPMX19_05253at 784.989 kb on - strand, within MPMX19_05253at 785.016 kb on - strand, within MPMX19_05253at 785.183 kb on + strandat 785.183 kb on + strandat 785.183 kb on + strandat 785.184 kb on - strandat 785.240 kb on + strandat 785.240 kb on + strandat 785.240 kb on + strandat 785.240 kb on + strandat 785.240 kb on + strandat 785.241 kb on - strandat 785.241 kb on - strandat 785.241 kb on - strandat 785.241 kb on - strandat 785.241 kb on - strandat 785.241 kb on - strandat 785.241 kb on - strandat 785.241 kb on - strandat 785.241 kb on - strandat 785.241 kb on - strandat 785.397 kb on + strandat 785.397 kb on + strandat 785.536 kb on + strand, within MPMX19_05254at 785.536 kb on + strand, within MPMX19_05254at 785.536 kb on + strand, within MPMX19_05254at 785.537 kb on - strand, within MPMX19_05254at 785.537 kb on - strand, within MPMX19_05254at 785.936 kb on + strandat 785.937 kb on - strandat 785.937 kb on - strandat 785.937 kb on - strandat 785.956 kb on + strandat 785.956 kb on + strandat 785.956 kb on + strandat 785.956 kb on + strandat 785.956 kb on + strandat 785.956 kb on + strandat 785.956 kb on + strandat 785.956 kb on + strandat 785.956 kb on + strandat 785.956 kb on + strandat 785.956 kb on + strandat 785.956 kb on + strandat 785.956 kb on + strandat 785.957 kb on - strandat 785.957 kb on - strandat 785.957 kb on - strandat 785.957 kb on - strandat 785.957 kb on - strandat 785.957 kb on - strandat 785.957 kb on - strandat 785.957 kb on - strandat 785.957 kb on - strandat 785.957 kb on - strandat 785.957 kb on - strandat 785.957 kb on - strandat 786.034 kb on - strandat 786.107 kb on + strandat 786.108 kb on - strandat 786.149 kb on + strandat 786.150 kb on - strandat 786.185 kb on - strandat 786.190 kb on + strandat 786.190 kb on + strandat 786.190 kb on + strandat 786.191 kb on - strandat 786.191 kb on - strandat 786.191 kb on - strandat 786.191 kb on - strandat 786.191 kb on - strandat 786.381 kb on + strand, within MPMX19_05255at 786.381 kb on + strand, within MPMX19_05255at 786.381 kb on + strand, within MPMX19_05255at 786.381 kb on + strand, within MPMX19_05255at 786.381 kb on + strand, within MPMX19_05255at 786.381 kb on + strand, within MPMX19_05255at 786.381 kb on + strand, within MPMX19_05255at 786.381 kb on + strand, within MPMX19_05255at 786.381 kb on + strand, within MPMX19_05255at 786.382 kb on - strand, within MPMX19_05255at 786.382 kb on - strand, within MPMX19_05255at 786.382 kb on - strand, within MPMX19_05255at 786.382 kb on - strand, within MPMX19_05255at 786.382 kb on - strand, within MPMX19_05255at 786.382 kb on - strand, within MPMX19_05255at 786.382 kb on - strand, within MPMX19_05255at 786.384 kb on + strand, within MPMX19_05255at 786.384 kb on + strand, within MPMX19_05255at 786.385 kb on - strand, within MPMX19_05255at 786.385 kb on - strand, within MPMX19_05255at 786.414 kb on + strand, within MPMX19_05255at 786.414 kb on + strand, within MPMX19_05255at 786.414 kb on + strand, within MPMX19_05255at 786.414 kb on + strand, within MPMX19_05255at 786.415 kb on - strand, within MPMX19_05255at 786.415 kb on - strand, within MPMX19_05255at 786.415 kb on - strand, within MPMX19_05255at 786.415 kb on - strand, within MPMX19_05255at 786.415 kb on - strand, within MPMX19_05255at 786.609 kb on + strand, within MPMX19_05255at 786.609 kb on + strand, within MPMX19_05255at 786.609 kb on + strand, within MPMX19_05255at 786.609 kb on + strand, within MPMX19_05255at 786.609 kb on + strand, within MPMX19_05255at 786.609 kb on + strand, within MPMX19_05255at 786.609 kb on + strand, within MPMX19_05255at 786.609 kb on + strand, within MPMX19_05255at 786.609 kb on + strand, within MPMX19_05255at 786.610 kb on - strand, within MPMX19_05255at 786.610 kb on - strand, within MPMX19_05255at 786.610 kb on - strand, within MPMX19_05255at 786.610 kb on - strand, within MPMX19_05255at 786.610 kb on - strand, within MPMX19_05255at 786.610 kb on - strand, within MPMX19_05255at 786.610 kb on - strand, within MPMX19_05255at 786.610 kb on - strand, within MPMX19_05255at 786.610 kb on - strand, within MPMX19_05255at 786.618 kb on + strand, within MPMX19_05255at 786.618 kb on + strand, within MPMX19_05255at 786.618 kb on + strand, within MPMX19_05255at 786.618 kb on + strand, within MPMX19_05255at 786.618 kb on + strand, within MPMX19_05255at 786.618 kb on + strand, within MPMX19_05255at 786.618 kb on + strand, within MPMX19_05255at 786.618 kb on + strand, within MPMX19_05255at 786.618 kb on + strand, within MPMX19_05255at 786.618 kb on + strand, within MPMX19_05255at 786.618 kb on + strand, within MPMX19_05255at 786.618 kb on + strand, within MPMX19_05255at 786.618 kb on + strand, within MPMX19_05255at 786.618 kb on + strand, within MPMX19_05255at 786.618 kb on + strand, within MPMX19_05255at 786.618 kb on + strand, within MPMX19_05255at 786.618 kb on + strand, within MPMX19_05255at 786.619 kb on - strand, within MPMX19_05255at 786.619 kb on - strand, within MPMX19_05255at 786.619 kb on - strand, within MPMX19_05255at 786.619 kb on - strand, within MPMX19_05255at 786.619 kb on - strand, within MPMX19_05255at 786.619 kb on - strand, within MPMX19_05255at 786.619 kb on - strand, within MPMX19_05255at 786.619 kb on - strand, within MPMX19_05255at 786.619 kb on - strand, within MPMX19_05255at 786.619 kb on - strand, within MPMX19_05255at 786.619 kb on - strand, within MPMX19_05255at 786.619 kb on - strand, within MPMX19_05255at 786.756 kb on + strand, within MPMX19_05255at 786.756 kb on + strand, within MPMX19_05255at 786.756 kb on + strand, within MPMX19_05255at 786.756 kb on + strand, within MPMX19_05255at 786.756 kb on + strand, within MPMX19_05255at 786.756 kb on + strand, within MPMX19_05255at 786.756 kb on + strand, within MPMX19_05255at 786.756 kb on + strand, within MPMX19_05255at 786.756 kb on + strand, within MPMX19_05255at 786.757 kb on - strand, within MPMX19_05255at 786.757 kb on - strand, within MPMX19_05255at 786.757 kb on - strand, within MPMX19_05255at 786.757 kb on - strand, within MPMX19_05255at 786.757 kb on - strand, within MPMX19_05255at 786.757 kb on - strand, within MPMX19_05255at 786.757 kb on - strand, within MPMX19_05255at 786.781 kb on - strand, within MPMX19_05255

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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784,526 + MPMX19_05253 0.67 +0.6
784,526 + MPMX19_05253 0.67 -1.3
784,527 - MPMX19_05253 0.67 +1.2
784,664 + MPMX19_05253 0.73 +0.0
784,664 + MPMX19_05253 0.73 -0.1
784,664 + MPMX19_05253 0.73 +0.4
784,664 + MPMX19_05253 0.73 +0.1
784,664 + MPMX19_05253 0.73 -1.1
784,665 - MPMX19_05253 0.73 +1.3
784,665 - MPMX19_05253 0.73 +0.2
784,665 - MPMX19_05253 0.73 +1.0
784,665 - MPMX19_05253 0.73 +1.3
784,665 - MPMX19_05253 0.73 -0.6
784,665 - MPMX19_05253 0.73 -0.8
784,665 - MPMX19_05253 0.73 -2.5
784,685 + MPMX19_05253 0.74 +0.7
784,685 + MPMX19_05253 0.74 -1.8
784,685 + MPMX19_05253 0.74 +0.2
784,686 - MPMX19_05253 0.74 +0.0
784,686 - MPMX19_05253 0.74 -1.4
784,686 - MPMX19_05253 0.74 -0.6
784,817 + MPMX19_05253 0.79 -0.1
784,817 + MPMX19_05253 0.79 -1.0
784,818 - MPMX19_05253 0.79 +0.2
784,818 - MPMX19_05253 0.79 +0.6
784,818 - MPMX19_05253 0.79 -0.1
784,818 - MPMX19_05253 0.79 +0.1
784,818 - MPMX19_05253 0.79 -1.2
784,907 + MPMX19_05253 0.83 -0.9
784,907 + MPMX19_05253 0.83 +0.0
784,907 + MPMX19_05253 0.83 +1.8
784,908 - MPMX19_05253 0.83 -1.7
784,988 + MPMX19_05253 0.86 +0.2
784,988 + MPMX19_05253 0.86 +0.5
784,988 + MPMX19_05253 0.86 +0.6
784,988 + MPMX19_05253 0.86 -0.3
784,988 + MPMX19_05253 0.86 +1.2
784,988 + MPMX19_05253 0.86 -0.1
784,988 + MPMX19_05253 0.86 +0.4
784,988 + MPMX19_05253 0.86 -0.9
784,989 - MPMX19_05253 0.86 -1.6
784,989 - MPMX19_05253 0.86 -0.2
784,989 - MPMX19_05253 0.86 +0.4
785,016 - MPMX19_05253 0.87 -0.4
785,183 + -1.0
785,183 + -0.3
785,183 + -1.1
785,184 - -1.1
785,240 + -0.7
785,240 + -1.3
785,240 + +2.0
785,240 + +1.4
785,240 + +1.0
785,241 - -2.0
785,241 - -0.6
785,241 - -1.3
785,241 - +0.6
785,241 - -0.6
785,241 - -0.6
785,241 - -1.4
785,241 - +0.3
785,241 - -1.4
785,241 - -1.0
785,397 + +0.4
785,397 + +0.0
785,536 + MPMX19_05254 0.28 -0.6
785,536 + MPMX19_05254 0.28 +0.2
785,536 + MPMX19_05254 0.28 +0.7
785,537 - MPMX19_05254 0.28 -1.6
785,537 - MPMX19_05254 0.28 -0.3
785,936 + -0.9
785,937 - -0.4
785,937 - -0.2
785,937 - -1.7
785,956 + -1.3
785,956 + +1.0
785,956 + -1.3
785,956 + -0.1
785,956 + +0.0
785,956 + -1.2
785,956 + +0.2
785,956 + -1.1
785,956 + +0.2
785,956 + -0.3
785,956 + -0.5
785,956 + -0.1
785,956 + -1.2
785,957 - +0.3
785,957 - -0.3
785,957 - -2.9
785,957 - -2.1
785,957 - +0.1
785,957 - +0.4
785,957 - -1.5
785,957 - -0.4
785,957 - +0.4
785,957 - -0.8
785,957 - +1.0
785,957 - -0.4
786,034 - -1.2
786,107 + -0.6
786,108 - +0.0
786,149 + -1.4
786,150 - +0.7
786,185 - -0.1
786,190 + +0.4
786,190 + -1.1
786,190 + +1.2
786,191 - -0.7
786,191 - -1.5
786,191 - -2.3
786,191 - +0.0
786,191 - +0.3
786,381 + MPMX19_05255 0.14 +0.4
786,381 + MPMX19_05255 0.14 -1.4
786,381 + MPMX19_05255 0.14 +0.7
786,381 + MPMX19_05255 0.14 -1.0
786,381 + MPMX19_05255 0.14 +1.0
786,381 + MPMX19_05255 0.14 -1.3
786,381 + MPMX19_05255 0.14 -1.0
786,381 + MPMX19_05255 0.14 -0.1
786,381 + MPMX19_05255 0.14 -0.6
786,382 - MPMX19_05255 0.14 -0.2
786,382 - MPMX19_05255 0.14 -1.6
786,382 - MPMX19_05255 0.14 -0.2
786,382 - MPMX19_05255 0.14 +0.8
786,382 - MPMX19_05255 0.14 +0.7
786,382 - MPMX19_05255 0.14 +0.6
786,382 - MPMX19_05255 0.14 +0.4
786,384 + MPMX19_05255 0.14 -1.1
786,384 + MPMX19_05255 0.14 +0.0
786,385 - MPMX19_05255 0.15 +0.0
786,385 - MPMX19_05255 0.15 -1.4
786,414 + MPMX19_05255 0.18 +0.4
786,414 + MPMX19_05255 0.18 -0.7
786,414 + MPMX19_05255 0.18 +0.4
786,414 + MPMX19_05255 0.18 +1.2
786,415 - MPMX19_05255 0.18 -0.2
786,415 - MPMX19_05255 0.18 -1.7
786,415 - MPMX19_05255 0.18 +0.6
786,415 - MPMX19_05255 0.18 -0.4
786,415 - MPMX19_05255 0.18 -0.8
786,609 + MPMX19_05255 0.38 -0.6
786,609 + MPMX19_05255 0.38 -0.8
786,609 + MPMX19_05255 0.38 +0.0
786,609 + MPMX19_05255 0.38 +1.4
786,609 + MPMX19_05255 0.38 +0.2
786,609 + MPMX19_05255 0.38 +0.7
786,609 + MPMX19_05255 0.38 +0.6
786,609 + MPMX19_05255 0.38 -1.7
786,609 + MPMX19_05255 0.38 -0.0
786,610 - MPMX19_05255 0.38 +0.0
786,610 - MPMX19_05255 0.38 -0.0
786,610 - MPMX19_05255 0.38 +1.0
786,610 - MPMX19_05255 0.38 -1.4
786,610 - MPMX19_05255 0.38 +1.0
786,610 - MPMX19_05255 0.38 -0.5
786,610 - MPMX19_05255 0.38 -0.6
786,610 - MPMX19_05255 0.38 -0.9
786,610 - MPMX19_05255 0.38 -0.7
786,618 + MPMX19_05255 0.38 +0.1
786,618 + MPMX19_05255 0.38 +0.8
786,618 + MPMX19_05255 0.38 -0.4
786,618 + MPMX19_05255 0.38 -0.5
786,618 + MPMX19_05255 0.38 +0.7
786,618 + MPMX19_05255 0.38 +1.0
786,618 + MPMX19_05255 0.38 -0.2
786,618 + MPMX19_05255 0.38 -0.1
786,618 + MPMX19_05255 0.38 -0.3
786,618 + MPMX19_05255 0.38 +0.2
786,618 + MPMX19_05255 0.38 -1.1
786,618 + MPMX19_05255 0.38 +0.0
786,618 + MPMX19_05255 0.38 -0.6
786,618 + MPMX19_05255 0.38 +0.4
786,618 + MPMX19_05255 0.38 -1.1
786,618 + MPMX19_05255 0.38 +0.4
786,618 + MPMX19_05255 0.38 -1.0
786,619 - MPMX19_05255 0.39 -0.1
786,619 - MPMX19_05255 0.39 +0.3
786,619 - MPMX19_05255 0.39 +0.0
786,619 - MPMX19_05255 0.39 +0.3
786,619 - MPMX19_05255 0.39 +0.7
786,619 - MPMX19_05255 0.39 -0.8
786,619 - MPMX19_05255 0.39 +0.8
786,619 - MPMX19_05255 0.39 -0.6
786,619 - MPMX19_05255 0.39 +1.0
786,619 - MPMX19_05255 0.39 -0.6
786,619 - MPMX19_05255 0.39 -1.6
786,619 - MPMX19_05255 0.39 -0.2
786,756 + MPMX19_05255 0.53 -1.6
786,756 + MPMX19_05255 0.53 +0.4
786,756 + MPMX19_05255 0.53 -0.6
786,756 + MPMX19_05255 0.53 +1.7
786,756 + MPMX19_05255 0.53 +1.5
786,756 + MPMX19_05255 0.53 -0.7
786,756 + MPMX19_05255 0.53 -1.4
786,756 + MPMX19_05255 0.53 +0.6
786,756 + MPMX19_05255 0.53 +0.0
786,757 - MPMX19_05255 0.53 +0.0
786,757 - MPMX19_05255 0.53 +1.3
786,757 - MPMX19_05255 0.53 +0.2
786,757 - MPMX19_05255 0.53 -1.0
786,757 - MPMX19_05255 0.53 +0.0
786,757 - MPMX19_05255 0.53 +0.0
786,757 - MPMX19_05255 0.53 -1.6
786,781 - MPMX19_05255 0.55 +1.8

Or see this region's nucleotide sequence