Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05236

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05234 and MPMX19_05235 are separated by 2 nucleotidesMPMX19_05235 and MPMX19_05236 are separated by 190 nucleotidesMPMX19_05236 and MPMX19_05237 are separated by 258 nucleotides MPMX19_05234: MPMX19_05234 - Glycine betaine/choline transport system permease protein OusW, at 760,723 to 761,649 _05234 MPMX19_05235: MPMX19_05235 - HTH-type transcriptional regulator BetI, at 761,652 to 762,227 _05235 MPMX19_05236: MPMX19_05236 - hypothetical protein, at 762,418 to 763,392 _05236 MPMX19_05237: MPMX19_05237 - Sensor histidine kinase RcsC, at 763,651 to 766,338 _05237 Position (kb) 762 763 764Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 761.534 kb on + strand, within MPMX19_05234at 761.534 kb on + strand, within MPMX19_05234at 761.534 kb on + strand, within MPMX19_05234at 761.534 kb on + strand, within MPMX19_05234at 761.534 kb on + strand, within MPMX19_05234at 761.535 kb on - strand, within MPMX19_05234at 761.535 kb on - strand, within MPMX19_05234at 761.535 kb on - strand, within MPMX19_05234at 761.535 kb on - strand, within MPMX19_05234at 761.677 kb on + strandat 761.677 kb on + strandat 761.677 kb on + strandat 761.677 kb on + strandat 761.677 kb on + strandat 761.678 kb on - strandat 761.678 kb on - strandat 762.082 kb on + strand, within MPMX19_05235at 762.082 kb on + strand, within MPMX19_05235at 762.082 kb on + strand, within MPMX19_05235at 762.082 kb on + strand, within MPMX19_05235at 762.082 kb on + strand, within MPMX19_05235at 762.083 kb on - strand, within MPMX19_05235at 762.083 kb on - strand, within MPMX19_05235at 762.083 kb on - strand, within MPMX19_05235at 762.083 kb on - strand, within MPMX19_05235at 762.083 kb on - strand, within MPMX19_05235at 762.083 kb on - strand, within MPMX19_05235at 762.286 kb on + strandat 762.417 kb on + strandat 762.417 kb on + strandat 762.418 kb on - strandat 762.418 kb on - strandat 762.418 kb on - strandat 762.418 kb on - strandat 762.418 kb on - strandat 762.418 kb on - strandat 762.418 kb on - strandat 762.607 kb on + strand, within MPMX19_05236at 762.607 kb on + strand, within MPMX19_05236at 762.608 kb on - strand, within MPMX19_05236at 762.608 kb on - strand, within MPMX19_05236at 762.624 kb on - strand, within MPMX19_05236at 762.646 kb on + strand, within MPMX19_05236at 762.646 kb on + strand, within MPMX19_05236at 762.646 kb on + strand, within MPMX19_05236at 762.646 kb on + strand, within MPMX19_05236at 762.647 kb on - strand, within MPMX19_05236at 762.647 kb on - strand, within MPMX19_05236at 762.647 kb on - strand, within MPMX19_05236at 762.647 kb on - strand, within MPMX19_05236at 762.647 kb on - strand, within MPMX19_05236at 762.648 kb on + strand, within MPMX19_05236at 762.648 kb on + strand, within MPMX19_05236at 762.648 kb on + strand, within MPMX19_05236at 762.648 kb on + strand, within MPMX19_05236at 762.649 kb on - strand, within MPMX19_05236at 762.649 kb on - strand, within MPMX19_05236at 762.649 kb on - strand, within MPMX19_05236at 762.649 kb on - strand, within MPMX19_05236at 762.649 kb on - strand, within MPMX19_05236at 762.778 kb on + strand, within MPMX19_05236at 762.779 kb on - strand, within MPMX19_05236at 762.799 kb on + strand, within MPMX19_05236at 762.800 kb on - strand, within MPMX19_05236at 762.871 kb on + strand, within MPMX19_05236at 762.871 kb on + strand, within MPMX19_05236at 762.871 kb on + strand, within MPMX19_05236at 762.871 kb on + strand, within MPMX19_05236at 762.871 kb on + strand, within MPMX19_05236at 762.871 kb on + strand, within MPMX19_05236at 762.871 kb on + strand, within MPMX19_05236at 762.871 kb on + strand, within MPMX19_05236at 762.871 kb on + strand, within MPMX19_05236at 762.871 kb on + strand, within MPMX19_05236at 762.872 kb on - strand, within MPMX19_05236at 762.872 kb on - strand, within MPMX19_05236at 762.872 kb on - strand, within MPMX19_05236at 762.872 kb on - strand, within MPMX19_05236at 762.872 kb on - strand, within MPMX19_05236at 762.872 kb on - strand, within MPMX19_05236at 763.075 kb on + strand, within MPMX19_05236at 763.075 kb on + strand, within MPMX19_05236at 763.075 kb on + strand, within MPMX19_05236at 763.075 kb on + strand, within MPMX19_05236at 763.075 kb on + strand, within MPMX19_05236at 763.075 kb on + strand, within MPMX19_05236at 763.075 kb on + strand, within MPMX19_05236at 763.075 kb on + strand, within MPMX19_05236at 763.075 kb on + strand, within MPMX19_05236at 763.075 kb on + strand, within MPMX19_05236at 763.075 kb on + strand, within MPMX19_05236at 763.075 kb on + strand, within MPMX19_05236at 763.076 kb on - strand, within MPMX19_05236at 763.076 kb on - strand, within MPMX19_05236at 763.076 kb on - strand, within MPMX19_05236at 763.076 kb on - strand, within MPMX19_05236at 763.076 kb on - strand, within MPMX19_05236at 763.076 kb on - strand, within MPMX19_05236at 763.076 kb on - strand, within MPMX19_05236at 763.076 kb on - strand, within MPMX19_05236at 763.150 kb on + strand, within MPMX19_05236at 763.151 kb on - strand, within MPMX19_05236at 763.151 kb on - strand, within MPMX19_05236at 763.390 kb on + strandat 763.405 kb on + strandat 763.420 kb on + strandat 763.494 kb on + strandat 763.523 kb on + strandat 763.523 kb on + strandat 763.523 kb on + strandat 763.524 kb on - strandat 763.524 kb on - strandat 763.524 kb on - strandat 763.524 kb on - strandat 763.533 kb on + strandat 763.533 kb on + strandat 763.533 kb on + strandat 763.533 kb on + strandat 763.533 kb on + strandat 763.533 kb on + strandat 763.533 kb on + strandat 763.534 kb on - strandat 763.534 kb on - strandat 763.534 kb on - strandat 763.534 kb on - strandat 763.534 kb on - strandat 763.534 kb on - strandat 763.534 kb on - strandat 763.610 kb on + strandat 763.610 kb on + strandat 763.757 kb on - strandat 763.786 kb on + strandat 763.787 kb on - strandat 763.825 kb on + strandat 763.825 kb on + strandat 763.825 kb on + strandat 763.825 kb on + strandat 763.826 kb on - strandat 763.826 kb on - strandat 763.826 kb on - strandat 763.826 kb on - strandat 763.826 kb on - strandat 763.826 kb on - strandat 763.981 kb on + strand, within MPMX19_05237at 763.981 kb on + strand, within MPMX19_05237at 763.981 kb on + strand, within MPMX19_05237at 763.981 kb on + strand, within MPMX19_05237at 763.981 kb on + strand, within MPMX19_05237at 763.981 kb on + strand, within MPMX19_05237at 763.981 kb on + strand, within MPMX19_05237at 763.981 kb on + strand, within MPMX19_05237at 763.982 kb on - strand, within MPMX19_05237at 763.982 kb on - strand, within MPMX19_05237at 763.982 kb on - strand, within MPMX19_05237at 763.982 kb on - strand, within MPMX19_05237at 763.982 kb on - strand, within MPMX19_05237

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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761,534 + MPMX19_05234 0.87 +0.6
761,534 + MPMX19_05234 0.87 -1.8
761,534 + MPMX19_05234 0.87 -1.0
761,534 + MPMX19_05234 0.87 +1.0
761,534 + MPMX19_05234 0.87 -3.0
761,535 - MPMX19_05234 0.88 +0.2
761,535 - MPMX19_05234 0.88 -1.1
761,535 - MPMX19_05234 0.88 -0.8
761,535 - MPMX19_05234 0.88 -0.8
761,677 + -1.9
761,677 + +0.0
761,677 + +0.9
761,677 + -0.1
761,677 + -1.0
761,678 - +1.6
761,678 - +0.3
762,082 + MPMX19_05235 0.75 -0.3
762,082 + MPMX19_05235 0.75 -1.4
762,082 + MPMX19_05235 0.75 -1.0
762,082 + MPMX19_05235 0.75 +0.8
762,082 + MPMX19_05235 0.75 -2.1
762,083 - MPMX19_05235 0.75 -0.3
762,083 - MPMX19_05235 0.75 -0.2
762,083 - MPMX19_05235 0.75 +0.4
762,083 - MPMX19_05235 0.75 +0.2
762,083 - MPMX19_05235 0.75 +1.0
762,083 - MPMX19_05235 0.75 -0.0
762,286 + +0.2
762,417 + -1.0
762,417 + +0.7
762,418 - -1.5
762,418 - +0.4
762,418 - -1.1
762,418 - -0.1
762,418 - -1.0
762,418 - -2.2
762,418 - -1.1
762,607 + MPMX19_05236 0.19 -2.5
762,607 + MPMX19_05236 0.19 -1.7
762,608 - MPMX19_05236 0.19 -1.1
762,608 - MPMX19_05236 0.19 -0.1
762,624 - MPMX19_05236 0.21 -0.3
762,646 + MPMX19_05236 0.23 -1.6
762,646 + MPMX19_05236 0.23 -0.6
762,646 + MPMX19_05236 0.23 -0.1
762,646 + MPMX19_05236 0.23 +0.0
762,647 - MPMX19_05236 0.23 -1.4
762,647 - MPMX19_05236 0.23 -0.6
762,647 - MPMX19_05236 0.23 -0.9
762,647 - MPMX19_05236 0.23 -1.4
762,647 - MPMX19_05236 0.23 +1.0
762,648 + MPMX19_05236 0.24 -0.7
762,648 + MPMX19_05236 0.24 +0.2
762,648 + MPMX19_05236 0.24 -0.8
762,648 + MPMX19_05236 0.24 +1.0
762,649 - MPMX19_05236 0.24 -0.3
762,649 - MPMX19_05236 0.24 -0.2
762,649 - MPMX19_05236 0.24 +0.2
762,649 - MPMX19_05236 0.24 +1.2
762,649 - MPMX19_05236 0.24 -1.3
762,778 + MPMX19_05236 0.37 +1.4
762,779 - MPMX19_05236 0.37 -0.8
762,799 + MPMX19_05236 0.39 -2.4
762,800 - MPMX19_05236 0.39 -0.2
762,871 + MPMX19_05236 0.46 +1.0
762,871 + MPMX19_05236 0.46 -1.7
762,871 + MPMX19_05236 0.46 -1.1
762,871 + MPMX19_05236 0.46 -0.6
762,871 + MPMX19_05236 0.46 -1.1
762,871 + MPMX19_05236 0.46 -0.1
762,871 + MPMX19_05236 0.46 -0.1
762,871 + MPMX19_05236 0.46 -1.7
762,871 + MPMX19_05236 0.46 +0.8
762,871 + MPMX19_05236 0.46 -0.3
762,872 - MPMX19_05236 0.47 -1.6
762,872 - MPMX19_05236 0.47 +0.0
762,872 - MPMX19_05236 0.47 -1.3
762,872 - MPMX19_05236 0.47 +0.8
762,872 - MPMX19_05236 0.47 -0.7
762,872 - MPMX19_05236 0.47 +0.5
763,075 + MPMX19_05236 0.67 +0.3
763,075 + MPMX19_05236 0.67 -0.2
763,075 + MPMX19_05236 0.67 -1.9
763,075 + MPMX19_05236 0.67 +0.4
763,075 + MPMX19_05236 0.67 +0.1
763,075 + MPMX19_05236 0.67 -1.1
763,075 + MPMX19_05236 0.67 -0.8
763,075 + MPMX19_05236 0.67 -0.6
763,075 + MPMX19_05236 0.67 -1.0
763,075 + MPMX19_05236 0.67 -0.5
763,075 + MPMX19_05236 0.67 +0.7
763,075 + MPMX19_05236 0.67 +0.0
763,076 - MPMX19_05236 0.67 -0.3
763,076 - MPMX19_05236 0.67 -0.6
763,076 - MPMX19_05236 0.67 -2.3
763,076 - MPMX19_05236 0.67 -0.2
763,076 - MPMX19_05236 0.67 +1.0
763,076 - MPMX19_05236 0.67 -1.4
763,076 - MPMX19_05236 0.67 -0.6
763,076 - MPMX19_05236 0.67 -0.8
763,150 + MPMX19_05236 0.75 -0.6
763,151 - MPMX19_05236 0.75 +2.0
763,151 - MPMX19_05236 0.75 -0.1
763,390 + -0.9
763,405 + -1.1
763,420 + -0.8
763,494 + -0.7
763,523 + -1.0
763,523 + -2.1
763,523 + -1.7
763,524 - -0.7
763,524 - -2.7
763,524 - -0.2
763,524 - +0.2
763,533 + +0.4
763,533 + +0.2
763,533 + -1.3
763,533 + -1.1
763,533 + -1.2
763,533 + +0.9
763,533 + -2.1
763,534 - -0.3
763,534 - -0.9
763,534 - -1.0
763,534 - -0.6
763,534 - -1.6
763,534 - -0.9
763,534 - +1.5
763,610 + +0.1
763,610 + -0.3
763,757 - -1.3
763,786 + -0.3
763,787 - +1.2
763,825 + +0.7
763,825 + +0.9
763,825 + -0.3
763,825 + -0.9
763,826 - -1.0
763,826 - -2.1
763,826 - -0.4
763,826 - +0.2
763,826 - -0.9
763,826 - -1.7
763,981 + MPMX19_05237 0.12 -0.1
763,981 + MPMX19_05237 0.12 -0.3
763,981 + MPMX19_05237 0.12 +0.6
763,981 + MPMX19_05237 0.12 +0.0
763,981 + MPMX19_05237 0.12 +0.4
763,981 + MPMX19_05237 0.12 -0.6
763,981 + MPMX19_05237 0.12 -0.4
763,981 + MPMX19_05237 0.12 -1.7
763,982 - MPMX19_05237 0.12 -1.1
763,982 - MPMX19_05237 0.12 -1.2
763,982 - MPMX19_05237 0.12 +0.4
763,982 - MPMX19_05237 0.12 -1.7
763,982 - MPMX19_05237 0.12 +0.7

Or see this region's nucleotide sequence