Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05199

Experiment: NL-CCM, start OD=0.3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_05197 and MPMX19_05198 are separated by 27 nucleotidesMPMX19_05198 and MPMX19_05199 are separated by 190 nucleotidesMPMX19_05199 and MPMX19_05200 are separated by 124 nucleotides MPMX19_05197: MPMX19_05197 - Inducible ornithine decarboxylase, at 699,833 to 702,193 _05197 MPMX19_05198: MPMX19_05198 - hypothetical protein, at 702,221 to 702,877 _05198 MPMX19_05199: MPMX19_05199 - Zinc transport protein ZntB, at 703,068 to 704,078 _05199 MPMX19_05200: MPMX19_05200 - Hydroxypyruvate reductase, at 704,203 to 705,213 _05200 Position (kb) 703 704 705Strain fitness (log2 ratio) -2 -1 0 1at 702.501 kb on + strand, within MPMX19_05198at 702.505 kb on + strand, within MPMX19_05198at 702.506 kb on - strand, within MPMX19_05198at 702.506 kb on - strand, within MPMX19_05198at 702.513 kb on + strand, within MPMX19_05198at 702.513 kb on + strand, within MPMX19_05198at 702.513 kb on + strand, within MPMX19_05198at 702.513 kb on + strand, within MPMX19_05198at 702.513 kb on + strand, within MPMX19_05198at 702.514 kb on - strand, within MPMX19_05198at 702.514 kb on - strand, within MPMX19_05198at 702.514 kb on - strand, within MPMX19_05198at 702.534 kb on + strand, within MPMX19_05198at 702.534 kb on + strand, within MPMX19_05198at 702.534 kb on + strand, within MPMX19_05198at 702.534 kb on + strand, within MPMX19_05198at 702.535 kb on - strand, within MPMX19_05198at 702.535 kb on - strand, within MPMX19_05198at 702.570 kb on + strand, within MPMX19_05198at 702.571 kb on - strand, within MPMX19_05198at 702.576 kb on + strand, within MPMX19_05198at 702.577 kb on - strand, within MPMX19_05198at 702.706 kb on + strand, within MPMX19_05198at 702.711 kb on + strand, within MPMX19_05198at 702.711 kb on + strand, within MPMX19_05198at 702.711 kb on + strand, within MPMX19_05198at 702.712 kb on - strand, within MPMX19_05198at 702.717 kb on + strand, within MPMX19_05198at 702.717 kb on + strand, within MPMX19_05198at 702.717 kb on + strand, within MPMX19_05198at 702.717 kb on + strand, within MPMX19_05198at 702.717 kb on + strand, within MPMX19_05198at 702.717 kb on + strand, within MPMX19_05198at 702.718 kb on - strand, within MPMX19_05198at 702.718 kb on - strand, within MPMX19_05198at 702.718 kb on - strand, within MPMX19_05198at 702.718 kb on - strand, within MPMX19_05198at 702.718 kb on - strand, within MPMX19_05198at 702.718 kb on - strand, within MPMX19_05198at 702.718 kb on - strand, within MPMX19_05198at 702.718 kb on - strand, within MPMX19_05198at 703.010 kb on + strandat 703.067 kb on + strandat 703.116 kb on + strandat 703.116 kb on + strandat 703.123 kb on + strandat 703.124 kb on - strandat 703.362 kb on + strand, within MPMX19_05199at 703.362 kb on + strand, within MPMX19_05199at 703.362 kb on + strand, within MPMX19_05199at 703.362 kb on + strand, within MPMX19_05199at 703.362 kb on + strand, within MPMX19_05199at 703.363 kb on - strand, within MPMX19_05199at 703.363 kb on - strand, within MPMX19_05199at 703.363 kb on - strand, within MPMX19_05199at 703.363 kb on - strand, within MPMX19_05199at 703.363 kb on - strand, within MPMX19_05199at 703.363 kb on - strand, within MPMX19_05199at 703.497 kb on + strand, within MPMX19_05199at 703.497 kb on + strand, within MPMX19_05199at 703.498 kb on - strand, within MPMX19_05199at 703.620 kb on + strand, within MPMX19_05199at 703.798 kb on - strand, within MPMX19_05199at 703.798 kb on - strand, within MPMX19_05199at 704.606 kb on - strand, within MPMX19_05200at 704.606 kb on - strand, within MPMX19_05200at 704.606 kb on - strand, within MPMX19_05200

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
remove
702,501 + MPMX19_05198 0.43 +1.3
702,505 + MPMX19_05198 0.43 +0.2
702,506 - MPMX19_05198 0.43 -0.3
702,506 - MPMX19_05198 0.43 -1.1
702,513 + MPMX19_05198 0.44 -0.0
702,513 + MPMX19_05198 0.44 +0.3
702,513 + MPMX19_05198 0.44 -1.3
702,513 + MPMX19_05198 0.44 -1.4
702,513 + MPMX19_05198 0.44 -0.7
702,514 - MPMX19_05198 0.45 -0.0
702,514 - MPMX19_05198 0.45 -0.9
702,514 - MPMX19_05198 0.45 +0.0
702,534 + MPMX19_05198 0.48 -0.9
702,534 + MPMX19_05198 0.48 +0.3
702,534 + MPMX19_05198 0.48 -0.1
702,534 + MPMX19_05198 0.48 -1.3
702,535 - MPMX19_05198 0.48 -0.9
702,535 - MPMX19_05198 0.48 -0.8
702,570 + MPMX19_05198 0.53 -0.3
702,571 - MPMX19_05198 0.53 -0.8
702,576 + MPMX19_05198 0.54 -1.3
702,577 - MPMX19_05198 0.54 +1.2
702,706 + MPMX19_05198 0.74 -2.1
702,711 + MPMX19_05198 0.75 -0.3
702,711 + MPMX19_05198 0.75 -0.4
702,711 + MPMX19_05198 0.75 +0.4
702,712 - MPMX19_05198 0.75 -0.1
702,717 + MPMX19_05198 0.75 -1.4
702,717 + MPMX19_05198 0.75 -0.1
702,717 + MPMX19_05198 0.75 +0.8
702,717 + MPMX19_05198 0.75 -1.1
702,717 + MPMX19_05198 0.75 -0.2
702,717 + MPMX19_05198 0.75 -0.2
702,718 - MPMX19_05198 0.76 +0.0
702,718 - MPMX19_05198 0.76 +0.4
702,718 - MPMX19_05198 0.76 -0.3
702,718 - MPMX19_05198 0.76 -0.3
702,718 - MPMX19_05198 0.76 +0.0
702,718 - MPMX19_05198 0.76 -0.6
702,718 - MPMX19_05198 0.76 +0.6
702,718 - MPMX19_05198 0.76 +0.4
703,010 + -1.1
703,067 + -0.1
703,116 + -1.7
703,116 + -0.8
703,123 + -0.4
703,124 - -0.3
703,362 + MPMX19_05199 0.29 +1.7
703,362 + MPMX19_05199 0.29 -0.4
703,362 + MPMX19_05199 0.29 -1.2
703,362 + MPMX19_05199 0.29 -1.3
703,362 + MPMX19_05199 0.29 -1.1
703,363 - MPMX19_05199 0.29 +0.7
703,363 - MPMX19_05199 0.29 +0.7
703,363 - MPMX19_05199 0.29 +0.8
703,363 - MPMX19_05199 0.29 -0.4
703,363 - MPMX19_05199 0.29 -0.9
703,363 - MPMX19_05199 0.29 -0.4
703,497 + MPMX19_05199 0.42 -0.3
703,497 + MPMX19_05199 0.42 -0.1
703,498 - MPMX19_05199 0.43 +0.4
703,620 + MPMX19_05199 0.55 +0.0
703,798 - MPMX19_05199 0.72 -1.4
703,798 - MPMX19_05199 0.72 -0.5
704,606 - MPMX19_05200 0.40 +1.0
704,606 - MPMX19_05200 0.40 -0.3
704,606 - MPMX19_05200 0.40 +0.0

Or see this region's nucleotide sequence