Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05187 and MPMX19_05188 are separated by 12 nucleotides MPMX19_05188 and MPMX19_05189 overlap by 7 nucleotides MPMX19_05189 and MPMX19_05190 are separated by 49 nucleotides MPMX19_05190 and MPMX19_05191 are separated by 27 nucleotides
MPMX19_05187: MPMX19_05187 - 3-mercaptopropionate dioxygenase, at 690,969 to 691,607
_05187
MPMX19_05188: MPMX19_05188 - Aliphatic sulfonates import ATP-binding protein SsuB, at 691,620 to 692,414
_05188
MPMX19_05189: MPMX19_05189 - hypothetical protein, at 692,408 to 693,460
_05189
MPMX19_05190: MPMX19_05190 - putative malonic semialdehyde reductase RutE, at 693,510 to 694,142
_05190
MPMX19_05191: MPMX19_05191 - Phenylacetate-coenzyme A ligase, at 694,170 to 695,504
_05191
Position (kb) 692
693
694 Strain fitness (log2 ratio) -2
-1
0
1 at 691.429 kb on + strand, within MPMX19_05187 at 691.429 kb on + strand, within MPMX19_05187 at 691.429 kb on + strand, within MPMX19_05187 at 691.429 kb on + strand, within MPMX19_05187 at 691.429 kb on + strand, within MPMX19_05187 at 691.429 kb on + strand, within MPMX19_05187 at 691.429 kb on + strand, within MPMX19_05187 at 691.429 kb on + strand, within MPMX19_05187 at 691.984 kb on + strand, within MPMX19_05188 at 691.984 kb on + strand, within MPMX19_05188 at 691.984 kb on + strand, within MPMX19_05188 at 691.985 kb on - strand, within MPMX19_05188 at 692.110 kb on + strand, within MPMX19_05188 at 692.110 kb on + strand, within MPMX19_05188 at 692.111 kb on - strand, within MPMX19_05188 at 692.410 kb on - strand at 692.557 kb on - strand, within MPMX19_05189 at 692.557 kb on - strand, within MPMX19_05189 at 692.905 kb on - strand, within MPMX19_05189 at 692.970 kb on + strand, within MPMX19_05189 at 692.970 kb on + strand, within MPMX19_05189 at 692.971 kb on - strand, within MPMX19_05189 at 693.709 kb on + strand, within MPMX19_05190 at 693.791 kb on - strand, within MPMX19_05190 at 693.791 kb on - strand, within MPMX19_05190 at 693.791 kb on - strand, within MPMX19_05190 at 693.791 kb on - strand, within MPMX19_05190 at 693.835 kb on + strand, within MPMX19_05190 at 693.835 kb on + strand, within MPMX19_05190 at 693.835 kb on + strand, within MPMX19_05190 at 693.835 kb on + strand, within MPMX19_05190 at 693.835 kb on + strand, within MPMX19_05190 at 693.835 kb on + strand, within MPMX19_05190 at 693.835 kb on + strand, within MPMX19_05190 at 693.835 kb on + strand, within MPMX19_05190 at 693.988 kb on + strand, within MPMX19_05190 at 693.988 kb on + strand, within MPMX19_05190 at 693.989 kb on - strand, within MPMX19_05190 at 694.127 kb on + strand at 694.128 kb on - strand at 694.128 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 691,429 + MPMX19_05187 0.72 +0.2 691,429 + MPMX19_05187 0.72 -0.3 691,429 + MPMX19_05187 0.72 -1.7 691,429 + MPMX19_05187 0.72 -1.3 691,429 + MPMX19_05187 0.72 -1.0 691,429 + MPMX19_05187 0.72 -1.0 691,429 + MPMX19_05187 0.72 -0.4 691,429 + MPMX19_05187 0.72 -0.2 691,984 + MPMX19_05188 0.46 -1.4 691,984 + MPMX19_05188 0.46 -0.5 691,984 + MPMX19_05188 0.46 +0.4 691,985 - MPMX19_05188 0.46 -0.8 692,110 + MPMX19_05188 0.62 -0.8 692,110 + MPMX19_05188 0.62 +0.4 692,111 - MPMX19_05188 0.62 -0.3 692,410 - -1.0 692,557 - MPMX19_05189 0.14 -2.5 692,557 - MPMX19_05189 0.14 -0.4 692,905 - MPMX19_05189 0.47 +0.2 692,970 + MPMX19_05189 0.53 +0.7 692,970 + MPMX19_05189 0.53 -1.1 692,971 - MPMX19_05189 0.53 +0.4 693,709 + MPMX19_05190 0.31 -0.3 693,791 - MPMX19_05190 0.44 -0.6 693,791 - MPMX19_05190 0.44 +0.1 693,791 - MPMX19_05190 0.44 -0.3 693,791 - MPMX19_05190 0.44 -1.1 693,835 + MPMX19_05190 0.51 -0.2 693,835 + MPMX19_05190 0.51 -1.7 693,835 + MPMX19_05190 0.51 +0.6 693,835 + MPMX19_05190 0.51 -0.3 693,835 + MPMX19_05190 0.51 -1.2 693,835 + MPMX19_05190 0.51 -0.4 693,835 + MPMX19_05190 0.51 -0.3 693,835 + MPMX19_05190 0.51 -0.6 693,988 + MPMX19_05190 0.76 -1.3 693,988 + MPMX19_05190 0.76 -0.1 693,989 - MPMX19_05190 0.76 +0.0 694,127 + -2.1 694,128 - -1.1 694,128 - -0.1
Or see this region's nucleotide sequence